Mercurial > repos > peterjc > tmhmm_and_signalp
diff tools/protein_analysis/promoter2.xml @ 9:e52220a9ddad draft
Uploaded v0.1.2
Use the new <stdio> settings in the XML wrappers to catch errors.
Obeys SGE style XNSLOTS environment variable for thread count (otherwise default to 4).
author | peterjc |
---|---|
date | Fri, 25 Jan 2013 06:08:31 -0500 |
parents | 976a5f2833cd |
children | 6abd809cefdd |
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--- a/tools/protein_analysis/promoter2.xml Mon Jul 30 12:56:54 2012 -0400 +++ b/tools/protein_analysis/promoter2.xml Fri Jan 25 06:08:31 2013 -0500 @@ -1,4 +1,4 @@ -<tool id="promoter2" name="Promoter 2.0" version="0.0.2"> +<tool id="promoter2" name="Promoter 2.0" version="0.0.3"> <description>Find eukaryotic PolII promoters in DNA sequences</description> <!-- If job splitting is enabled, break up the query file into parts --> <!-- Using 2000 per chunk so 4 threads each doing 500 is ideal --> @@ -9,6 +9,11 @@ ##which (on SGE at least) will set the $NSLOTS environment variable. ##If the environment variable isn't set, get "", and defaults to one. </command> + <stdio> + <!-- Anything other than zero is an error --> + <exit_code range="1:" /> + <exit_code range=":-1" /> + </stdio> <inputs> <param name="fasta_file" type="data" format="fasta" label="FASTA file of DNA sequences"/> </inputs>