Mercurial > repos > peterjc > tmhmm_and_signalp

diff tools/protein_analysis/signalp3.xml @ 9:e52220a9ddad draft

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Uploaded v0.1.2 Use the new <stdio> settings in the XML wrappers to catch errors. Obeys SGE style XNSLOTS environment variable for thread count (otherwise default to 4).
author peterjc
date Fri, 25 Jan 2013 06:08:31 -0500
parents 9b45a8743100
children 99b82a2b1272
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--- a/tools/protein_analysis/signalp3.xml	Mon Jul 30 12:56:54 2012 -0400
+++ b/tools/protein_analysis/signalp3.xml	Fri Jan 25 06:08:31 2013 -0500
@@ -1,4 +1,4 @@
-<tool id="signalp3" name="SignalP 3.0" version="0.0.9">
+<tool id="signalp3" name="SignalP 3.0" version="0.0.10">
     <description>Find signal peptides in protein sequences</description>
     <!-- If job splitting is enabled, break up the query file into parts -->
     <!-- Using 2000 chunks meaning 4 threads doing 500 each is ideal -->
@@ -9,6 +9,11 @@
       ##which (on SGE at least) will set the $NSLOTS environment variable.
       ##If the environment variable isn't set, get "", and defaults to one.
     </command>
+    <stdio>
+        <!-- Anything other than zero is an error -->
+        <exit_code range="1:" />
+        <exit_code range=":-1" />
+    </stdio>
     <inputs>
         <param name="fasta_file" type="data" format="fasta" label="FASTA file of protein sequences"/> 
         <param name="organism" type="select" display="radio" label="Organism">