Mercurial > repos > peterjc > tmhmm_and_signalp
diff tools/protein_analysis/wolf_psort.xml @ 9:e52220a9ddad draft
Uploaded v0.1.2
Use the new <stdio> settings in the XML wrappers to catch errors.
Obeys SGE style XNSLOTS environment variable for thread count (otherwise default to 4).
author | peterjc |
---|---|
date | Fri, 25 Jan 2013 06:08:31 -0500 |
parents | a290c6d4e658 |
children | 99b82a2b1272 |
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--- a/tools/protein_analysis/wolf_psort.xml Mon Jul 30 12:56:54 2012 -0400 +++ b/tools/protein_analysis/wolf_psort.xml Fri Jan 25 06:08:31 2013 -0500 @@ -1,9 +1,14 @@ -<tool id="wolf_psort" name="WoLF PSORT" version="0.0.1"> +<tool id="wolf_psort" name="WoLF PSORT" version="0.0.2"> <description>Eukaryote protein subcellular localization prediction</description> <command interpreter="python"> wolf_psort.py $organism 8 $fasta_file $tabular_file ##I want the number of threads to be a Galaxy config option... </command> + <stdio> + <!-- Anything other than zero is an error --> + <exit_code range="1:" /> + <exit_code range=":-1" /> + </stdio> <inputs> <param name="fasta_file" type="data" format="fasta" label="FASTA file of protein sequences"/> <param name="organism" type="select" display="radio" label="Organism">