Mercurial > repos > peterjc > tmhmm_and_signalp
diff tools/protein_analysis/promoter2.xml @ 18:eb6ac44d4b8e draft
Suite v0.2.8, record Promoter 2 verion + misc internal updates
author | peterjc |
---|---|
date | Tue, 01 Sep 2015 09:56:36 -0400 |
parents | e6cc27d182a8 |
children | a19b3ded8f33 |
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--- a/tools/protein_analysis/promoter2.xml Fri Nov 21 08:19:09 2014 -0500 +++ b/tools/protein_analysis/promoter2.xml Tue Sep 01 09:56:36 2015 -0400 @@ -1,27 +1,29 @@ -<tool id="promoter2" name="Promoter 2.0" version="0.0.8"> +<tool id="promoter2" name="Promoter 2.0" version="0.0.10"> <description>Find eukaryotic PolII promoters in DNA sequences</description> <!-- If job splitting is enabled, break up the query file into parts --> <!-- Using 2000 per chunk so 4 threads each doing 500 is ideal --> <parallelism method="basic" split_inputs="fasta_file" split_mode="to_size" split_size="2000" merge_outputs="tabular_file"></parallelism> + <requirements> + <requirement type="binary">promoter</requirement> + <requirement type="package">promoter</requirement> + </requirements> + <stdio> + <!-- Anything other than zero is an error --> + <exit_code range="1:" /> + <exit_code range=":-1" /> + </stdio> + <version_command interpreter="python">promoter2.py --version</version_command> <command interpreter="python"> promoter2.py "\$GALAXY_SLOTS" "$fasta_file" "$tabular_file" ##If the environment variable isn't set, get "", and the python wrapper ##defaults to four threads. </command> - <stdio> - <!-- Anything other than zero is an error --> - <exit_code range="1:" /> - <exit_code range=":-1" /> - </stdio> <inputs> <param name="fasta_file" type="data" format="fasta" label="FASTA file of DNA sequences"/> </inputs> <outputs> <data name="tabular_file" format="tabular" label="Promoter2 on ${fasta_file.name}" /> </outputs> - <requirements> - <requirement type="binary">promoter</requirement> - </requirements> <tests> <test> <param name="fasta_file" value="Adenovirus.fasta" ftype="fasta"/>