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comparison tools/venn_list/README.rst @ 8:ee50d9ef9d69 draft

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v0.0.11 Python 3 compatible print; capture script version
author peterjc
date Thu, 11 May 2017 06:21:20 -0400
parents ea68a1a4c1d9
children 679b6323db03
comparison
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7:ba31415fedc5 8:ee50d9ef9d69
73 - Planemo for Tool Shed upload (``.shed.yml``, internal change only). 73 - Planemo for Tool Shed upload (``.shed.yml``, internal change only).
74 - Tool Shed dependency for rpy and limma (thanks to Björn Grüning). 74 - Tool Shed dependency for rpy and limma (thanks to Björn Grüning).
75 v0.0.10 - Updated to point at Biopython 1.67 (latest version in Tool Shed). 75 v0.0.10 - Updated to point at Biopython 1.67 (latest version in Tool Shed).
76 - Explicit dependency on ``galaxy_sequence_utils``. 76 - Explicit dependency on ``galaxy_sequence_utils``.
77 - Python style updates (internal change only). 77 - Python style updates (internal change only).
78 v0.0.11 - Use ``<command detect_errors="aggressive">`` (internal change only).
79 - Single quote command line arguments (internal change only)
80 - Python 3 compatible print function.
81 - Capture python script version when run from Galaxy.
78 ======= ====================================================================== 82 ======= ======================================================================
79 83
80 84
81 Developers 85 Developers
82 ========== 86 ==========
89 93
90 For pushing a release to the test or main "Galaxy Tool Shed", use the following 94 For pushing a release to the test or main "Galaxy Tool Shed", use the following
91 Planemo commands (which requires you have set your Tool Shed access details in 95 Planemo commands (which requires you have set your Tool Shed access details in
92 ``~/.planemo.yml`` and that you have access rights on the Tool Shed):: 96 ``~/.planemo.yml`` and that you have access rights on the Tool Shed)::
93 97
94 $ planemo shed_update -t testtoolshed --check_diff ~/repositories/pico_galaxy/tools/venn_list/ 98 $ planemo shed_update -t testtoolshed --check_diff tools/venn_list/
95 ... 99 ...
96 100
97 or:: 101 or::
98 102
99 $ planemo shed_update -t toolshed --check_diff ~/repositories/pico_galaxy/tools/venn_list/ 103 $ planemo shed_update -t toolshed --check_diff tools/venn_list/
100 ... 104 ...
101 105
102 To just build and check the tar ball, use:: 106 To just build and check the tar ball, use::
103 107
104 $ planemo shed_upload --tar_only ~/repositories/pico_galaxy/tools/venn_list/ 108 $ planemo shed_upload --tar_only tools/venn_list/
105 ... 109 ...
106 $ tar -tzf shed_upload.tar.gz 110 $ tar -tzf shed_upload.tar.gz
107 tools/venn_list/README.rst 111 tools/venn_list/README.rst
108 tools/venn_list/tool_dependencies.xml 112 tools/venn_list/tool_dependencies.xml
109 tools/venn_list/venn_list.py 113 tools/venn_list/venn_list.py