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1 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
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2 <!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
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3 "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
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4 <!-- Generated by graphviz version 2.36.0 (20140111.2315)
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5 -->
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6 <!-- Title: G Pages: 1 -->
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7 <svg width="2270pt" height="436pt"
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8 viewBox="0.00 0.00 2270.00 436.00" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
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9 <g id="graph0" class="graph" transform="scale(1 1) rotate(0) translate(4 432)">
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10 <title>G</title>
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14 </g>
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15 <!-- dante -->
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16 <g id="node1" class="node"><title>dante</title>
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18 <text text-anchor="middle" x="1004" y="-390.3" font-family="Times,serif" font-size="14.00" fill="#000000">dante</text>
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23 <text text-anchor="middle" x="89" y="-318.3" font-family="Times,serif" font-size="14.00" fill="#000000">CustomFormatter</text>
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25 <!-- dante->dante__CustomFormatter -->
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26 <g id="edge4" class="edge"><title>dante->dante__CustomFormatter</title>
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38 <text text-anchor="middle" x="505" y="-174.3" font-family="Times,serif" font-size="14.00" fill="#000000">adjust_gff</text>
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40 <!-- dante->dante__adjust_gff -->
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41 <g id="edge7" class="edge"><title>dante->dante__adjust_gff</title>
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46 <g id="node4" class="node"><title>dante__alignment_scoring</title>
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50 <!-- dante->dante__alignment_scoring -->
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51 <g id="edge20" class="edge"><title>dante->dante__alignment_scoring</title>
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56 <g id="node5" class="node"><title>dante__annotations_dict</title>
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60 <!-- dante->dante__annotations_dict -->
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61 <g id="edge5" class="edge"><title>dante->dante__annotations_dict</title>
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65 <!-- dante__best_score -->
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66 <g id="node6" class="node"><title>dante__best_score</title>
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70 <!-- dante->dante__best_score -->
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71 <g id="edge12" class="edge"><title>dante->dante__best_score</title>
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75 <!-- dante__characterize_fasta -->
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76 <g id="node7" class="node"><title>dante__characterize_fasta</title>
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78 <text text-anchor="middle" x="757" y="-174.3" font-family="Times,serif" font-size="14.00" fill="#000000">characterize_fasta</text>
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80 <!-- dante->dante__characterize_fasta -->
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81 <g id="edge2" class="edge"><title>dante->dante__characterize_fasta</title>
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85 <!-- dante__create_gff3 -->
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86 <g id="node8" class="node"><title>dante__create_gff3</title>
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88 <text text-anchor="middle" x="271" y="-174.3" font-family="Times,serif" font-size="14.00" fill="#000000">create_gff3</text>
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90 <!-- dante->dante__create_gff3 -->
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91 <g id="edge15" class="edge"><title>dante->dante__create_gff3</title>
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92 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M974.704,-390.945C914.316,-386.183 772.011,-372.247 657,-340 523.788,-302.65 375.042,-231.71 307.68,-197.872"/>
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95 <!-- dante__domain_annotation -->
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96 <g id="node9" class="node"><title>dante__domain_annotation</title>
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97 <ellipse fill="#fecccc" fill-opacity="0.698039" stroke="black" cx="928" cy="-178" rx="78.9404" ry="18"/>
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98 <text text-anchor="middle" x="928" y="-174.3" font-family="Times,serif" font-size="14.00" fill="#000000">domain_annotation</text>
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100 <!-- dante->dante__domain_annotation -->
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101 <g id="edge19" class="edge"><title>dante->dante__domain_annotation</title>
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102 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M997.993,-376.297C994.246,-365.866 989.33,-352.154 985,-340 968.209,-292.868 948.789,-237.921 937.501,-205.938"/>
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105 <!-- dante__domain_search -->
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106 <g id="node10" class="node"><title>dante__domain_search</title>
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107 <ellipse fill="#fecccc" fill-opacity="0.698039" stroke="black" cx="1077" cy="-250" rx="64.0172" ry="18"/>
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108 <text text-anchor="middle" x="1077" y="-246.3" font-family="Times,serif" font-size="14.00" fill="#000000">domain_search</text>
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109 </g>
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110 <!-- dante->dante__domain_search -->
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111 <g id="edge9" class="edge"><title>dante->dante__domain_search</title>
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115 <!-- dante__filter_params -->
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116 <g id="node11" class="node"><title>dante__filter_params</title>
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117 <ellipse fill="#fecccc" fill-opacity="0.698039" stroke="black" cx="258" cy="-106" rx="57.2688" ry="18"/>
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118 <text text-anchor="middle" x="258" y="-102.3" font-family="Times,serif" font-size="14.00" fill="#000000">filter_params</text>
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120 <!-- dante->dante__filter_params -->
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121 <g id="edge13" class="edge"><title>dante->dante__filter_params</title>
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122 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M974.684,-392.285C901.967,-389.928 707.917,-380.066 552,-340 392.662,-299.055 300.959,-333.741 211,-196 197.122,-174.75 214.122,-148.963 231.429,-130.628"/>
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125 <!-- dante__get_version -->
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126 <g id="node12" class="node"><title>dante__get_version</title>
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127 <ellipse fill="#fecccc" fill-opacity="0.698039" stroke="black" cx="1077" cy="-178" rx="51.4931" ry="18"/>
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128 <text text-anchor="middle" x="1077" y="-174.3" font-family="Times,serif" font-size="14.00" fill="#000000">get_version</text>
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130 <!-- dante->dante__get_version -->
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131 <g id="edge6" class="edge"><title>dante->dante__get_version</title>
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132 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M999.191,-375.849C991.564,-345.083 979.882,-279.315 1004,-232 1011.29,-217.692 1024.46,-206.343 1037.62,-197.878"/>
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135 <!-- dante__group_annot_regs -->
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136 <g id="node13" class="node"><title>dante__group_annot_regs</title>
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140 <!-- dante->dante__group_annot_regs -->
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141 <g id="edge11" class="edge"><title>dante->dante__group_annot_regs</title>
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142 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M1027.57,-383.191C1047.91,-373.987 1077.34,-358.834 1099,-340 1145.45,-299.62 1185.55,-238.939 1206.18,-204.769"/>
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145 <!-- dante__hits_processing -->
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146 <g id="node14" class="node"><title>dante__hits_processing</title>
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147 <ellipse fill="#fecccc" fill-opacity="0.698039" stroke="black" cx="1379" cy="-178" rx="65.4659" ry="18"/>
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148 <text text-anchor="middle" x="1379" y="-174.3" font-family="Times,serif" font-size="14.00" fill="#000000">hits_processing</text>
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150 <!-- dante->dante__hits_processing -->
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151 <g id="edge3" class="edge"><title>dante->dante__hits_processing</title>
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155 <!-- dante__line_generator -->
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156 <g id="node15" class="node"><title>dante__line_generator</title>
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157 <ellipse fill="#fecccc" fill-opacity="0.698039" stroke="black" cx="1524" cy="-178" rx="61.6163" ry="18"/>
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158 <text text-anchor="middle" x="1524" y="-174.3" font-family="Times,serif" font-size="14.00" fill="#000000">line_generator</text>
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159 </g>
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160 <!-- dante->dante__line_generator -->
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161 <g id="edge18" class="edge"><title>dante->dante__line_generator</title>
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162 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M1029.5,-384.775C1059.87,-374.825 1112.03,-357.253 1156,-340 1276.65,-292.653 1416.09,-229.193 1483.43,-197.973"/>
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165 <!-- dante__main -->
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166 <g id="node16" class="node"><title>dante__main</title>
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170 <!-- dante->dante__main -->
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171 <g id="edge16" class="edge"><title>dante->dante__main</title>
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175 <!-- dante->dante__main -->
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176 <g id="edge22" class="edge"><title>dante->dante__main</title>
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181 <g id="node17" class="node"><title>dante__overlapping_regions</title>
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185 <!-- dante->dante__overlapping_regions -->
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186 <g id="edge8" class="edge"><title>dante->dante__overlapping_regions</title>
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190 <!-- dante__score_matrix_evaluation -->
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191 <g id="node18" class="node"><title>dante__score_matrix_evaluation</title>
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196 <g id="edge1" class="edge"><title>dante->dante__score_matrix_evaluation</title>
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200 <!-- dante__score_table -->
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201 <g id="node19" class="node"><title>dante__score_table</title>
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202 <ellipse fill="#fecccc" fill-opacity="0.698039" stroke="black" cx="390" cy="-178" rx="50.5427" ry="18"/>
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203 <text text-anchor="middle" x="390" y="-174.3" font-family="Times,serif" font-size="14.00" fill="#000000">score_table</text>
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204 </g>
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205 <!-- dante->dante__score_table -->
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206 <g id="edge17" class="edge"><title>dante->dante__score_table</title>
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207 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M975.478,-388.762C929.132,-381.453 834.914,-364.833 758,-340 632.445,-299.462 491.475,-230.907 426.451,-197.887"/>
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211 <g id="node20" class="node"><title>dante__split_fasta</title>
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216 <g id="edge10" class="edge"><title>dante->dante__split_fasta</title>
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220 <!-- dante__write_info -->
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221 <g id="node21" class="node"><title>dante__write_info</title>
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225 <!-- dante->dante__write_info -->
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226 <g id="edge14" class="edge"><title>dante->dante__write_info</title>
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230 <!-- dante__create_gff3->dante__filter_params -->
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231 <g id="edge24" class="edge"><title>dante__create_gff3->dante__filter_params</title>
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235 <!-- dante__domain_search->dante__adjust_gff -->
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236 <g id="edge28" class="edge"><title>dante__domain_search->dante__adjust_gff</title>
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237 <path fill="none" stroke="#000000" d="M1013.92,-246.55C915.929,-241.845 721.572,-228.915 560,-196 556.144,-195.214 552.173,-194.268 548.214,-193.23"/>
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240 <!-- dante__domain_search->dante__best_score -->
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241 <g id="edge36" class="edge"><title>dante__domain_search->dante__best_score</title>
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245 <!-- dante__domain_search->dante__characterize_fasta -->
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246 <g id="edge29" class="edge"><title>dante__domain_search->dante__characterize_fasta</title>
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250 <!-- dante__domain_search->dante__create_gff3 -->
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251 <g id="edge38" class="edge"><title>dante__domain_search->dante__create_gff3</title>
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252 <path fill="none" stroke="#000000" d="M1012.49,-248.954C882.382,-247.869 579.624,-240.312 330,-196 325.631,-195.224 321.123,-194.252 316.637,-193.166"/>
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255 <!-- dante__domain_search->dante__domain_annotation -->
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256 <g id="edge34" class="edge"><title>dante__domain_search->dante__domain_annotation</title>
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257 <path fill="none" stroke="#000000" d="M1045.4,-234.155C1023.46,-223.845 993.976,-209.995 970.048,-198.754"/>
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260 <!-- dante__domain_search->dante__get_version -->
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261 <g id="edge31" class="edge"><title>dante__domain_search->dante__get_version</title>
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265 <!-- dante__domain_search->dante__group_annot_regs -->
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266 <g id="edge33" class="edge"><title>dante__domain_search->dante__group_annot_regs</title>
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270 <!-- dante__domain_search->dante__hits_processing -->
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271 <g id="edge30" class="edge"><title>dante__domain_search->dante__hits_processing</title>
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275 <!-- dante__domain_search->dante__line_generator -->
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276 <g id="edge40" class="edge"><title>dante__domain_search->dante__line_generator</title>
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280 <!-- dante__domain_search->dante__overlapping_regions -->
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281 <g id="edge35" class="edge"><title>dante__domain_search->dante__overlapping_regions</title>
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285 <!-- dante__domain_search->dante__score_matrix_evaluation -->
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286 <g id="edge27" class="edge"><title>dante__domain_search->dante__score_matrix_evaluation</title>
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290 <!-- dante__domain_search->dante__score_table -->
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291 <g id="edge39" class="edge"><title>dante__domain_search->dante__score_table</title>
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295 <!-- dante__domain_search->dante__split_fasta -->
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296 <g id="edge32" class="edge"><title>dante__domain_search->dante__split_fasta</title>
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300 <!-- dante__domain_search->dante__write_info -->
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301 <g id="edge37" class="edge"><title>dante__domain_search->dante__write_info</title>
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305 <!-- dante__filter_params->dante__alignment_scoring -->
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306 <g id="edge25" class="edge"><title>dante__filter_params->dante__alignment_scoring</title>
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310 <!-- dante__line_generator->dante__line_generator -->
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311 <g id="edge26" class="edge"><title>dante__line_generator->dante__line_generator</title>
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315 <!-- dante__main->dante__domain_search -->
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316 <g id="edge41" class="edge"><title>dante__main->dante__domain_search</title>
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320 <!-- dante__score_table->dante__annotations_dict -->
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321 <g id="edge23" class="edge"><title>dante__score_table->dante__annotations_dict</title>
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