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1 <tool id="gff_summary" name="Summarize gff3 output from DANTE" version="0.1.0" python_template_version="3.5">
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2 <requirements>
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3 <requirement type="package">R</requirement>
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4 </requirements>
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5 <command detect_errors="exit_code"><![CDATA[
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6 Rscript ${__tool_directory__}/summarize_gff.R '$inputgff' '$output' '$group'
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7 ]]></command>
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8 <inputs>
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9 <param type="data" name="inputgff" format="gff3" />
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10 <param name="group" type="select" label="select categories to summarize" multiple="true" optional="false">
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11 <option value="Name">protein domain name</option>
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12 <option value="Final_Classification">Classification</option>
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13 <option value="seqid">Sequence ID</option>
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14 </param>
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15 </inputs>
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16 <outputs>
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17 <data name="output" format="tabular" />
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18 </outputs>
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19 <help><![CDATA[
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20 TODO: Fill in help.
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21 ]]></help>
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22 </tool>
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