Mercurial > repos > petr-novak > dante

annotate tmp/multifasta_win.gff3 @ 6:6dcecbe81d78 draft

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author petr-novak
date Wed, 03 Jul 2019 07:32:07 -0400
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1 ##gff-version 3
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2 ##-----------------------------------------------
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3 ##PIPELINE VERSION : dante-rv-3081(adb2509)
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4 ##PROTEIN DATABASE VERSION : Viridiplantae_v3.0_pdb
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5 ##-----------------------------------------------
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6 Acoerulea195_58_rc dante protein_domain 1753 1956 368 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|SIRE;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|SIRE;Best_Hit=Ty1-PROT__REXdb_ID3879|Class_I|LTR|Ty1/copia|SIRE:1753-1956[100percent];Best_Hit_DB_Pos=1:68of68;DB_Seq=WLLDSGASKHMSGNAKLFSSVTAIDGGSVTFGNGKSSPVIGKGFVAGIGLSPNDVCLLVDGLRVNLIS;Query_Seq=WLLDSGASKHMSGNAKLFSSVTAIDGGSVTFGNGKSSPVIGKGFVAGIGLSPNDVCLLVDGLRVNLIS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
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7 Acoerulea195_58_rc dante protein_domain 2140 2742 1162 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|SIRE;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|SIRE;Best_Hit=Ty1-INT__REXdb_ID3979|Class_I|LTR|Ty1/copia|SIRE:2140-2742[100percent];Best_Hit_DB_Pos=1:201of201;DB_Seq=HQRLGHVNFEHLDNLTRNEYIKGVPRLGRNRDTVCGGCQLGKQIRSPHSKKKSITTSSPLELIHMDLMGPTRTPSLGGKRYILVMVDDYTRFTWVSFLREKSDAFLEFQGICLRIQNEKDTQIKHIRSDRGGEFTATGVIEYCIANGTWQEFSAPYTPQQNGVAERKNRVIQEMARAMLHAKDVPTKFWAEVVHTACYIMN;Query_Seq=HQRLGHVNFEHLDNLTRNEYIKGVPRLGRNRDTVCGGCQLGKQIRSPHSKKKSITTSSPLELIHMDLMGPTRTPSLGGKRYILVMVDDYTRFTWVSFLREKSDAFLEFQGICLRIQNEKDTQIKHIRSDRGGEFTATGVIEYCIANGTWQEFSAPYTPQQNGVAERKNRVIQEMARAMLHAKDVPTKFWAEVVHTACYIMN;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
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8 Acoerulea195_58_rc dante protein_domain 2815 2958 128 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|SIRE;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|SIRE;Best_Hit=Ty1-RT__REXdb_ID4340|Class_I|LTR|Ty1/copia|SIRE:2815-2958[100percent];Best_Hit_DB_Pos=1:48of256;DB_Seq=HFHIFGIPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTR;Query_Seq=YMRVFGSVCYVCKDRQSLSKFDSRGEVALLLGYSSNSRAFRVFNYTTR;Identity=0.46;Similarity=0.65;Relat_Length=0.188;Relat_Interruptions=0.0;Hit_to_DB_Length=0.19
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9 Acoerulea195_58_rc dante protein_domain 3268 4199 1404 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|SIRE;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|SIRE;Best_Hit=Ty1-RT__REXdb_ID3881|Class_I|LTR|Ty1/copia|SIRE:3433-4199[82percent];Best_Hit_DB_Pos=1:256of256;DB_Seq=WLVAMQEELGQFKRSDVWTLVPRPTHTNVVGTKWIFKNKLDEFGQIVRNKARLVAQGYSQIEGIDYGETFAPVARLESVRLLLAMACHLNFKLYQMDVKSAFLNGILNEEVYVEQPKGFVDHT-FPNHVFKLQKALYGLKQAPRAWYERLTSFLLGKGFVRGSVDRTLFILRKNTDVLLAQVYVDDIVFGSTCPSLSESFSQLMSSEFEMSLMGELNFFLGLQVKQFDHGAFISQTKYAKELVKKFGLSTSSGQDTP;Query_Seq=WLVAMQEELGQFKRSDVWTLVPRPTHTNVVGTKWIFKNKLDEFGQIVRNKARLVAQGYSQIEGIDYGETFAPVARLESVRLLLAMACHLNFKLYQMDVKSAFLNGILNEEVYVEQPKGFVDHT/FPNHVFKLQKALYGLKQAPRAWYERLTSFLLGKGFVRGSVDRTLFILRKNTDVLLAQVYVDDIVFGSTCPSLSESFSQLMSSEFEMSLMGELNFFLGLQVKQFDHGAFISQTKYAKELVKKFGLSTSSGQDTP;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0
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10 Acoerulea195_58_rc dante protein_domain 4260 4346 90 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RH__REXdb_ID3204|Class_I|LTR|Ty1/copia|Ivana:4260-4346[100percent];Best_Hit_DB_Pos=12:40of134;DB_Seq=YRSLIGCLMYLTATRPDIMHAVSLLSKKQ;Query_Seq=YRSMIGSLLYLTASRPDISYSVGVCARFQ;Identity=0.55;Similarity=0.83;Relat_Length=0.216;Relat_Interruptions=0.0;Hit_to_DB_Length=0.22
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11 Acoerulea195_58_rc dante protein_domain 4467 4844 733 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|SIRE;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|SIRE;Best_Hit=Ty1-RH__REXdb_ID3879|Class_I|LTR|Ty1/copia|SIRE:4467-4844[100percent];Best_Hit_DB_Pos=1:126of126;DB_Seq=DADWGGNLDDRHSTSGGCFYVGNNLVSWHSKKQSSVSISSCEAEYIAAASACTQLLWMRQMLRDYGIQQQAMDLFCDNTSTISISKNPVQHSRTKHIDIRHHFLREAVEKGDIVMEFIPTEHQLAD;Query_Seq=DADWGGNLDDRHSTSGGCFYVGNNLVSWHSKKQSSVSISSCEAEYIAAASACTQLLWMRQMLRDYGIQQQAMDLFCDNTSTISISKNPVQHSRTKHIDIRHHFLREAVEKGDIVMEFIPTEHQLAD;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
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12 Egrandis201_33_rc dante protein_domain 1161 1367 391 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-PROT__REXdb_ID324|Class_I|LTR|Ty1/copia|Ale:1161-1367[100percent];Best_Hit_DB_Pos=1:69of69;DB_Seq=WIIDTGASDHIVCNQFFFSNIEKLPFPISIQLPNGNTTHVGMTGTVNLSPLITLNNVLYVPSFQFNLIS;Query_Seq=WIIDTGASDHIVCNQFFFSNIEKLPFPISIQLPNGNTTHVGMTGTVNLSPLITLNNVLYVPSFQFNLIS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
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13 Egrandis201_33_rc dante protein_domain 1572 2195 1035 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-INT__REXdb_ID324|Class_I|LTR|Ty1/copia|Ale:1584-2123[86percent];Best_Hit_DB_Pos=1:180of180;DB_Seq=HQRLGHTTSFPYPQCHICPLVKQTCAPFQTSNTRLDSIFSLVHVDVWGPYHTLNHDGSWFFLTIVDDLSRATWVFLIQSKNQVLSHLRIFLSLSKTxFGKSICRIRTDNGKELFSGECASFFSSNGILHESTCTYTPQQNEVVERKHRHLLELAWALKFQASIPENFWGDCVVTAVYLIN;Query_Seq=HQRLGHTTSFPYPQCHICPLVKQTCAPFQTSNTRLDSIFSLVHVDVWGPYHTLNHDGSWFFLTIVDDLSRATWVFLIQSKNQVLSHLRIFLSLSKT*FGKSICRIRTDNGKELFSGECASFFSSNGILHESTCTYTPQQNEVVERKHRHLLELAWALKFQASIPENFWGDCVVTAVYLIN;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=0.5;Hit_to_DB_Length=1.0
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14 Egrandis201_33_rc dante protein_domain 2856 3620 1393 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RT__REXdb_ID324|Class_I|LTR|Ty1/copia|Ale:2856-3619[99percent];Best_Hit_DB_Pos=1:255of255;DB_Seq=WQRAMEVELKALIDNHIWDIVSLPPHRKPIGCKWVYKIN-HKVDGSVERYKARLVAKGFTxRExFDYHETFSSVAKDVTVCSFLSVAAFRNWSMHQMDIHNAFLHGDLEEEIYMDLPQGLRRQGESKVCRLRKSLYGLKxASRQWYTKFTNALTGAGFKQSKHDYALFTWTKVTSSIYLMIYVDDILIMGNDDSVVRKLKEYLHSSFHIKDLGSPKYFLGIEITRSDQGISLSQRKFVMEIISEAGLSGCKLAVIP;Query_Seq=WQRAMEVELKALIDNHIWDIVSLPPHRKPIGCKWVYKIN/YKVDGSVERYKARLVAKGFT*RE*FDYHETFSSVAKDVTVCSFLSVAAFRNWSMHQMDIHNAFLHGDLEEEIYMDLPQGLRRQGESKVCRLRKSLYGLK*ASRQWYTKFTNALTGAGFKQSKHDYALFTWTKVTSSIYLMIYVDDILIMGNDDSVVRKLKEYLHSSFHIKDLGSPKYFLGIEITRSDQGISLSQRKFVMEIISEAGLSGCKLAVIP;Identity=0.98;Similarity=0.98;Relat_Length=1.0;Relat_Interruptions=1.33;Hit_to_DB_Length=1.0
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15 Egrandis201_33_rc dante protein_domain 3914 4294 717 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RH__REXdb_ID324|Class_I|LTR|Ty1/copia|Ale:3914-4294[100percent];Best_Hit_DB_Pos=1:127of127;DB_Seq=DLDYATCPMSRRSIIGFCIKFGESLLSWKTKKQSTVSLSSAEAKYRSMAKTVCEVVWLRGLLQDLGIQVRGPTLLFCDNDSAIKLAANPILHERTKHIEVDCHFTREKIKEGIIKTRGIRTTEQPAD;Query_Seq=DLDYATCPMSRRSIIGFCIKFGESLLSWKTKKQSTVSLSSAEAKYRSMAKTVCEVVWLRGLLQDLGIQVRGPTLLFCDNDSAIKLAANPILHERTKHIEVDCHFTREKIKEGIIKTRGIRTTEQPAD;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
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16 Gmax275_361_rc dante protein_domain 560 829 471 + . Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Tork;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Tork;Best_Hit=Ty1-GAG__REXdb_ID5204|Class_I|LTR|Ty1/copia|Tork:560-829[100percent];Best_Hit_DB_Pos=1:90of90;DB_Seq=IRLTLAKSVVFNIVNEKTTAGLMKALSDMYKKPSAANKVYLMRRLFNLKMGEGISVTDHINEFNTILAQLESVQIKFEDEVKALILLSSL;Query_Seq=IRLTLAKSVVFNIVNEKTTAGLMKALSDMYKKPSAANKVYLMRRLFNLKMGEGISVTDHINEFNTILAQLESVQIKFEDEVKALILLSSL;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
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17 Gmax275_361_rc dante protein_domain 1250 1465 402 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Tork;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Tork;Best_Hit=Ty1-PROT__REXdb_ID5202|Class_I|LTR|Ty1/copia|Tork:1250-1465[100percent];Best_Hit_DB_Pos=1:72of72;DB_Seq=WIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINIKTSSGSLWTLHNVRHIPALKRNLIS;Query_Seq=WIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINIKTSSGSLWTLHNVRHIPALKRNLIS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
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18 Gmax275_361_rc dante protein_domain 1637 2230 1123 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Tork;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Tork;Best_Hit=Ty1-INT__REXdb_ID5204|Class_I|LTR|Ty1/copia|Tork:1637-2230[100percent];Best_Hit_DB_Pos=1:198of198;DB_Seq=HQRLGHMSEKGMKLMAAKGKLSSLKHVDVGACEHCILGKQKKVSFSRAGKTLKAEKLELVHTDVWGPAPVESVGNSHYYVTFIDDSTRKVWVYFLKNKSDVFSVFKRWKTKVENQTGLKVKNLKSDNGGEYDSQEFKDFCSEHGIRMIKTIPGTPEQNGVAERMNRTLNERARCMRIQSGLPKAFWAEAINTAAYLIN;Query_Seq=HQRLGHMSEKGMKLMAAKGKLSSLKHVDVGACEHCILGKQKKVSFSRAGKTLKAEKLELVHTDVWGPAPVESVGNSHYYVTFIDDSTRKVWVYFLKNKSDVFSVFKRWKTKVENQTGLKVKNLKSDNGGEYDSQEFKDFCSEHGIRMIKTIPGTPEQNGVAERMNRTLNERARCMRIQSGLPKAFWAEAINTAAYLIN;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
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19 Gmax275_361_rc dante protein_domain 2777 3549 1427 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Tork;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Tork;Best_Hit=Ty1-RT__REXdb_ID5204|Class_I|LTR|Ty1/copia|Tork:2777-3549[100percent];Best_Hit_DB_Pos=1:258of258;DB_Seq=WELAMKDEMTSLQKNKTW-WSLTEFPEGKKALQNRWVYRLKEESDGRRRYKARLVVKGFQQKQGIDFTEIFSPVVKMTTIRVILSIVAAENLHLEQLDVKTAFLHGDLEEDIYMTQPEGFEVPGKENLVCKLHKSLYGLKQAPRQWYKKFNEFMSNSGFKRCDMDHCCYVKKYTNSYVILVVYVDDMLIAGSSMAEINRLKLQLAENFEMKDLGPAKQILGMRILRNRSEGILKLSQEKYIHKLLDRFYLGDSKTRNTP;Query_Seq=WELAMKDEMTSLQKNKTC/WSLTEFPEGKKALQNRWVYRLKEESDGRRRYKARLVVKGFQQKQGIDFTEIFSPVVKMTTIRVILSIVAAENLHLEQLDVKTAFLHGDLEEDIYMTQPEGFEVPGKENLVCKLHKSLYGLKQAPRQWYKKFNEFMSNSGFKRCDMDHCCYVKKYTNSYVILVVYVDDMLIAGSSMAEINRLKLQLAENFEMKDLGPAKQILGMRILRNRSEGILKLSQEKYIHKLLDRFYLGDSKTRNTP;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0
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20 Gmax275_361_rc dante protein_domain 3835 4212 702 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Tork;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Tork;Best_Hit=Ty1-RH__REXdb_ID5204|Class_I|LTR|Ty1/copia|Tork:3835-4212[100percent];Best_Hit_DB_Pos=1:126of126;DB_Seq=YADLGGDFDTKKSTTGYIFTLGGTTVSWKSKLQDRVALSTTEAEYIAISEAAKEMIWLKNFLNELGKEQDDAPMFSDSQSAISLAKNPVFHSRCKHIQLRYHFIRELINDGDLSLLKILGSENPAD;Query_Seq=YADLGGDFDTKKSTTGYIFTLGGTTVSWKSKLQDRVALSTTEAEYIAISEAAKEMIWLKNFLNELGKEQDDAPMFSDSQSAISLAKNPVFHSRCKHIQLRYHFIRELINDGDLSLLKILGSENPAD;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
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21 Sitalica164_1034 dante protein_domain 3004 3273 486 + . Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Angela;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Angela;Best_Hit=Ty1-GAG__REXdb_ID1933|Class_I|LTR|Ty1/copia|Angela:3004-3273[100percent];Best_Hit_DB_Pos=1:90of90;DB_Seq=MLACMEPELQMQFKTNHEAHDMIVALRDMFQTxARAERFNVSKAFVESKLAEGAAVGPHVIKMVGYTQRLEKLGFPLGQELATDFILSSL;Query_Seq=MLACMEPELQMQFKTNHEAHDMIVALRDMFQT*ARAERFNVSKAFVESKLAEGAAVGPHVIKMVGYTQRLEKLGFPLGQELATDFILSSL;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.0
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22 Sitalica164_1034 dante protein_domain 3691 3912 417 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Angela;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Angela;Best_Hit=Ty1-PROT__REXdb_ID1924|Class_I|LTR|Ty1/copia|Angela:3691-3912[100percent];Best_Hit_DB_Pos=1:74of74;DB_Seq=WVFDTGSVAHICNSMQGMIRSRSVERGEVDFRVGNNARVAALTVGTMQLHLPSGFIMELNNCYFVPSLSRNILS;Query_Seq=WVFDTGSVAHICNSMQGMIRSRSVERGEVDFRVGNNARVAALTVGTMQLHLPSGFIMELNNCYFVPSLSRNILS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
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23 Sitalica164_1034 dante protein_domain 4106 4696 1131 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Angela;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Angela;Best_Hit=Ty1-INT__REXdb_ID1933|Class_I|LTR|Ty1/copia|Angela:4106-4696[100percent];Best_Hit_DB_Pos=1:197of197;DB_Seq=PCRLGHISEKRMKKLHSDGLLTSFDFESYETCEACLLGKMTKTPFTGFPERAVDLLELVHSDVCGPMSTTARGGFQYFITFTDDFSRYGYVYLMRHKSETFEKFKEFQNEVENQCGKKIKALRSDRGGEYLSHEFSNHLKSCRIVPQLTPPGTPQRNGVSERRNRTLLDMVRSMMSQSDLPLSFWGYALETAAFTLN;Query_Seq=PCRLGHISEKRMKKLHSDGLLTSFDFESYETCEACLLGKMTKTPFTGFPERAVDLLELVHSDVCGPMSTTARGGFQYFITFTDDFSRYGYVYLMRHKSETFEKFKEFQNEVENQCGKKIKALRSDRGGEYLSHEFSNHLKSCRIVPQLTPPGTPQRNGVSERRNRTLLDMVRSMMSQSDLPLSFWGYALETAAFTLN;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
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24 Sitalica164_1034 dante protein_domain 5188 5945 1389 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Angela;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Angela;Best_Hit=Ty1-RT__REXdb_ID1933|Class_I|LTR|Ty1/copia|Angela:5188-5945[100percent];Best_Hit_DB_Pos=1:253of253;DB_Seq=WQSAMQSETESMGDNxVWNLVDPP-IECKWIYKKKKDMDGNVHIYKARLVAKGFQQVQGVDYDETFSPVVMLKSIRIILAIVAYFDYEIWQMDVKIAFLNGNLAEDVYMIQPEGFVDPKNAGKVCKFQRSIYGLKQASRSWNIRFDEVVKGFDFTKNEEESCVYKKVSGSSVVFLILYVDDILLIGNNIPMLESVKTSLKNSFSMKDLGEAAYILGIKIYRDRSRRLIGLSQDTYIDKVLKRFSMEEAKKGFLP;Query_Seq=WQSAMQSETESMGDN*VWNLVDPP/IECKWIYKKKKDMDGNVHIYKARLVAKGFQQVQGVDYDETFSPVVMLKSIRIILAIVAYFDYEIWQMDVKIAFLNGNLAEDVYMIQPEGFVDPKNAGKVCKFQRSIYGLKQASRSWNIRFDEVVKGFDFTKNEEESCVYKKVSGSSVVFLILYVDDILLIGNNIPMLESVKTSLKNSFSMKDLGEAAYILGIKIYRDRSRRLIGLSQDTYIDKVLKRFSMEEAKKGFLP;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=0.67;Hit_to_DB_Length=1.0
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petr-novak
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25 Sitalica164_1034 dante protein_domain 6233 6619 727 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Angela;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Angela;Best_Hit=Ty1-RH__REXdb_ID1933|Class_I|LTR|Ty1/copia|Angela:6233-6619[100percent];Best_Hit_DB_Pos=1:129of129;DB_Seq=DASFQTDRDDLKSQSGFVFMLNGGAVSWKSSKQETVANSTTEVEYIAALEAAKEGVWIRNFLIGLGVFPNVSSPLNLYCDNNGAIAQAKEPRNHQKNKHVMRRFHLIRDFVNRGEIKICKIHTDLNISD;Query_Seq=DASFQTDRDDLKSQSGFVFMLNGGAVSWKSSKQETVANSTTEVEYIAALEAAKEGVWIRNFLIGLGVFPNVSSPLNLYCDNNGAIAQAKEPRNHQKNKHVMRRFHLIRDFVNRGEIKICKIHTDLNISD;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
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parents:
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26 Spurpurea289_256_rc dante protein_domain 1045 1345 527 + . Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-GAG__REXdb_ID1014|Class_I|LTR|Ty1/copia|Ale:1045-1345[100percent];Best_Hit_DB_Pos=1:101of101;DB_Seq=LLGTIEPHLIANLRCFTMAQAMWAY-LRRIYHQDHSAQK-FQLExEINSYSQGNLTIEQFYSSFINIWSEYSAIVHAKVPTAALAALQAVHAESQRDQFFMKL;Query_Seq=LLGTIEPHLIANLRCFTMAQAMWAY/LRRIYHQDHSAQK/IQLE*EINSYSQGNLTIEQFYSSFINIWSEYSAIVHAKVPTAALAALQAVHAESQRDQFFMKL;Identity=0.96;Similarity=0.96;Relat_Length=1.0;Relat_Interruptions=1.5;Hit_to_DB_Length=1.02
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
27 Spurpurea289_256_rc dante protein_domain 1817 2011 353 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-PROT__REXdb_ID1014|Class_I|LTR|Ty1/copia|Ale:1817-2011[100percent];Best_Hit_DB_Pos=1:65of65;DB_Seq=LLVDSGASNHMIDNTTDLHDVHEYDGTQSIQIVNGSTHPITAVGNLDSSIKDVFVSPKLSTSLIS;Query_Seq=LLVDSGASNHMIDNTTDLHDVHEYDGTQSIQIVNGSTHPITAVGNLDSSIKDVFVSPKLSTSLIS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
28 Spurpurea289_256_rc dante protein_domain 2201 2790 1070 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-INT__REXdb_ID1014|Class_I|LTR|Ty1/copia|Ale:2201-2790[100percent];Best_Hit_DB_Pos=1:196of196;DB_Seq=HKKLGHPNSVVLTHLLKHGFLGNNNS-SSFDYAICRLGKSKTLPFPVHGNRASTLFEIVHYDVWGASPVISHGQYRYFVIFINDYSRFTWIYFLHSKAGMFSVFQKFVVLVETQFSTCIKILCSDS-GGxYMSNSFQNYLQQKGIISQRSCPYTPKQNGVAERKNRYLLDVVRALLIDSSVPTKFWVEALSTAVYLIN;Query_Seq=HKKLGHPNSVVLTHLLKHGFLGNNNS\SSFDYAICRLGKSKTLPFPVHGNRASTLFEIVHYDVWGASPVISHGQYRYFVIFINDYSRFTWIYFLHSKAGMFSVFQKFVVLVETQFSTCIKILCSDS\GG*YMSNSFQNYLQQKGIISQRSCPYTPKQNGVAERKNRYLLDVVRALLIDSSVPTKFWVEALSTAVYLIN;Identity=0.98;Similarity=0.98;Relat_Length=1.0;Relat_Interruptions=1.5;Hit_to_DB_Length=1.01
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
29 Spurpurea289_256_rc dante protein_domain 3343 4106 1381 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RT__REXdb_ID1014|Class_I|LTR|Ty1/copia|Ale:3343-4106[100percent];Best_Hit_DB_Pos=1:255of255;DB_Seq=WQQAMQEEIQALQDNQTWDLMTCP-PGVKLIGCKWVYSVKFRSDGSLDQYKARLVALGNRQEYGIDYEETFALVAKMTIVRTILALATSQEWSLRQMDVKNTFLHGDFKEEIYMSPPSSMFKTPSSEVCQLRRSLYGLKQAPRVWFDKFRSTLLDFHFIQSQFDSSLFLHKTSAGIVLLLVYVDDIVITRSNTELLKHSQKHLQDSFHMKDLGTLxYFLGLEVxITPTVTLLHQHKYMEEVISLASFQMGNSVLTP;Query_Seq=WQQAMQEEIQALQDNQTWDLMTCP/TGVKLIGCKWVYSVKFRSDGSLDQYKARLVALGNRQEYGIDYEETFALVAKMTIVRTILALATSQEWSLRQMDVKNTFLHGDFKEEIYMSPPSSMFKTPSSEVCQLRRSLYGLKQAPRVWFDKFRSTLLDFHFIQSQFDSSLFLHKTSAGIVLLLVYVDDIVITRSNTELLKHSQKHLQDSFHMKDLGTL*YFLGLEV*ITPTVTLLHQHKYMEEVISLASFQMGNSVLTP;Identity=0.98;Similarity=0.98;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.0
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
30 Spurpurea289_256_rc dante protein_domain 4373 4754 723 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RH__REXdb_ID1014|Class_I|LTR|Ty1/copia|Ale:4373-4754[100percent];Best_Hit_DB_Pos=1:127of127;DB_Seq=DADWAGCADTCRYVTGWCMFF-SNTLISWKSKKQDRVSKSSTESEYRAMSSAYSEITWLRGLLGELGFPQLQSTPLHADNTNAIQIAANPVFHERTKHNEVDCHSIRESFHxHEITLPHISTEHQTAD;Query_Seq=DADWAGCADTCRYVTGWCMFF\SNTLISWKSKKQDRVSKSSTESEYRAMSSAYSEITWLRGLLGELGFPQLQSTPLHADNTNAIQIAANPVFHERTKHNEVDCHSIRESFH*HEITLPHISTEHQTAD;Identity=0.98;Similarity=0.98;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.01
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
31 Stuberosum206_200_rc dante protein_domain 635 935 264 + . Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-GAG__REXdb_ID1200|Class_I|LTR|Ty1/copia|Ale:635-935[100percent];Best_Hit_DB_Pos=1:102of102;DB_Seq=IMNAVRPGLLSSVVYASDAR-KVWLDLRERFDTVNGSRIFQLHREIHSLTQGTMSIADYHSKLRDLWDEYDAIMPCPSCPCPESKNFGEHCDYQRLLQFLMGL;Query_Seq=LMSAVSEDLLSGIVYATSAY\RE--DLKERFDKVNRMRIYQLHREINTLSQGTDSVSTY*TKLKNLWGEFDAFVPSPSCACPKSKEYANHLYQLRLIQFLSGL;Identity=0.53;Similarity=0.71;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.01
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
32 Stuberosum206_200_rc dante protein_domain 1548 1760 189 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-PROT__REXdb_ID1200|Class_I|LTR|Ty1/copia|Ale:1548-1760[100percent];Best_Hit_DB_Pos=1:71of71;DB_Seq=WIIDTGASHHITSDLGLLDKAREVHAxRDSKVHLPNGKVAAVSHIGSTCVLANQSISNVLFLPDFKFNLLS;Query_Seq=WIIDSGASHHITADKHLLANSRCTTDPHHDKVNLPTGDKATISHIGEIFLFDNETVKDVLCVPDFKFNLLS;Identity=0.52;Similarity=0.66;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
33 Stuberosum206_200_rc dante protein_domain 1977 2580 538 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-INT__REXdb_ID1202|Class_I|LTR|Ty1/copia|Ale:1977-2559[96percent];Best_Hit_DB_Pos=1:194of194;DB_Seq=HKRLGHAPIDVIKRHESLSYLSNKDQS---HCTVCPISKQTKLPFALSTHKSKAV-FELLHCDLWGPYRVPTHNGKRFFVTIVDDYSRYTWIFLVTSKVDTIVVIKHFLLQVQNVFSTTVKTFRTDNGCEFFSKDFQNLMCEMGIIHQSTCVYTPQQNGIAERKHRTILAVARSLRFQASIPLRYWGECVTTAVYILN;Query_Seq=HRRLGHPSSHILKCLDLLH--SNKDVELLNSCLVCPLAKQTRLSFPISNSKT-SV\FELVHMDLWGPYKIPTFDKKHYFLTIVDDYSRYTWIHLLQLKSETIVAIKNFLLMIKNQFGHTIKTVRSDNGTEFFNSQCKELFLNLGISDQSNCPHIPQQNGVVERKHRHILNVARAIRFQACMPLRYWGLCVKATVYLIN;Identity=0.54;Similarity=0.7;Relat_Length=1.0;Relat_Interruptions=0.5;Hit_to_DB_Length=1.02
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
34 Stuberosum206_200_rc dante protein_domain 3252 3996 798 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RT__REXdb_ID1202|Class_I|LTR|Ty1/copia|Ale:3252-3996[100percent];Best_Hit_DB_Pos=1:256of256;DB_Seq=WVKAMELEIAALESNKTWSIVDLPPGKKPIGCKWIYKIKFLA-SGEVERFKARLVAKGFSQQEGLDYGETFSRVAKMVTVRSVVALAASRGWFIYQMDVHNAFLNGDLHEEVYMVIPNGFARQGECQKVCKLHKSLYGLKQAPRQWNMKLTEALVQMGFKQSHYDYSLFTKQAGDAVVVILVYVDDLLITGSSHELLCRTRQDIQKRFKMKDLGELKFFLGIEFSRSSKGILMTQRKYALELVSETGLGGAKPVHTP;Query_Seq=WIDAMKLEIKALEDNKTWMVVDLRKDKHAVGSKWI-------\NGEVERFKARLVAKGYSQHEGIHYHDTFSPVAKMVTVRCVIALAVSKGWSLYQMDVYNAFLQGDVDEEVYIEMPEGFRTQGTT-KVCKLIKSLYGLKQASRQWNIKLTNTLLSAGFIQSSHDYSLFTLKKPEGMVIILIYVDDLLITGDNEALIKEVNETLHKQFKLKDLGELKYFLGIEVLRSKNGIILNQRKYMLELISNTGLSGAKTTATP;Identity=0.61;Similarity=0.74;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
35 Stuberosum206_200_rc dante protein_domain 4084 4200 82 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RH__REXdb_ID3204|Class_I|LTR|Ty1/copia|Ivana:4084-4200[100percent];Best_Hit_DB_Pos=12:50of134;DB_Seq=YRSLIGCLMYLTATRPDIMHAVSLLSKKQEIIAQSTAEA;Query_Seq=YQRLVGKLMYATITRPDISYAVQTLSQFMQHPKRSHWEA;Identity=0.49;Similarity=0.64;Relat_Length=0.291;Relat_Interruptions=0.0;Hit_to_DB_Length=0.29
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
36 Stuberosum206_200_rc dante protein_domain 4291 4653 479 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RH__REXdb_ID1202|Class_I|LTR|Ty1/copia|Ale:4291-4638[95percent];Best_Hit_DB_Pos=1:116of127;DB_Seq=DSDWGACLETRKSVTGYLVKFGGGLISWKSKKQGTVSRSSAEAEFRSMAACAAEVTWLIGLYKELGVSLTLPIKMVCDSKAAIQIAANPIFHERTKHIDIDCHFVRERICQGILQT;Query_Seq=DSDWAACPKTRRSVTGYIVKFGESIVSWKSKKQQTISRSSAEAEYRSMTSAVAEVTWLIGLFKELNVSIQMPITVLSDSKSAIQLAANPVFHERTKHIEIDCHFIRDKVKAGVIQT;Identity=0.68;Similarity=0.88;Relat_Length=0.913;Relat_Interruptions=0.0;Hit_to_DB_Length=0.91
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
37 Vvinifera145_640 dante protein_domain 1451 1663 387 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-PROT__REXdb_ID2615|Class_I|LTR|Ty1/copia|Bianca:1451-1663[100percent];Best_Hit_DB_Pos=1:71of71;DB_Seq=CLADCATTHTILQDKRYFLELTLIKANVSNIYGTTNLVEGSGRANITLSNGTRFHINDALYSSKSRRNLLS;Query_Seq=CLADCATTHTILQDKRYFLELTLIKANVSNIYGTTNLVEGSGRANITLSNGTRFHINDALYSSKSRRNLLS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
38 Vvinifera145_640 dante protein_domain 1880 2488 1166 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-INT__REXdb_ID2615|Class_I|LTR|Ty1/copia|Bianca:1880-2488[100percent];Best_Hit_DB_Pos=1:203of203;DB_Seq=HDRLGHPGSSMMRRIIEHSHGHPLKNQKILSPNEYSCAACLQGKLIIRPSFTKVISESPIFLERIHGDICGPIHPPCGPFRYFMILIDASTRWSHVCLLSTRNVAFARLLAQIIRLRAQFPDYPIKTIRLDNVGEFTSQTFIDYCMLVxINIEHPVAHTHTQNGLAESFIKRLQLIARPLLMKTKLPTSAWGHAIMHTAVLVR;Query_Seq=HDRLGHPGSSMMRRIIEHSHGHPLKNQKILSPNEYSCAACLQGKLIIRPSFTKVISESPIFLERIHGDICGPIHPPCGPFRYFMILIDASTRWSHVCLLSTRNVAFARLLAQIIRLRAQFPDYPIKTIRLDNVGEFTSQTFIDYCMLV*INIEHPVAHTHTQNGLAESFIKRLQLIARPLLMKTKLPTSAWGHAIMHTAVLVR;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
39 Vvinifera145_640 dante protein_domain 3419 4212 1416 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RT__REXdb_ID2615|Class_I|LTR|Ty1/copia|Bianca:3428-4212[98percent];Best_Hit_DB_Pos=1:262of262;DB_Seq=WKEAIHAELNSLTKREVFGPVVQTPEDVKPVGCKWVFVRKRNENNEIIRYKAQLVAQGFSxRPGIDYEETYSPVMDAITFRFLISLAVSERLDIRLMDVITTYLYGSMDNDIYM-MKIPExFKLPEANNTKPRSMYSIKLQRSxYGLKxSGRMWYNRLSEYLLKEGYVNNPICPCIFIKSEMGFAIIIVYVDDLNLVGTLEELTRTTNYLKKEFETKDLGKTKSCLGLQIEHFPNGVLVHQSTFIKKVLKCFYMDKAHHLSSP;Query_Seq=WKEAIHAELNSLTKREVFGPVVQTPEDVKPVGCKWVFVRKRNENNEIIRYKAQLVAQGFS*RPGIDYEETYSPVMDAITFRFLISLAVSERLDIRLMDVITTYLYGSMDNDIYI/MKIPE*FKLPEANNTKPRSMYSIKLQRS*YGLK*SGRMWYNRLSEYLLKEGYVNNPICPCIFIKSEMGFAIIIVYVDDLNLVGTLEELTRTTNYLKKEFETKDLGKTKSCLGLQIEHFPNGVLVHQSTFIKKVLKCFYMDKAHHLSSP;Identity=0.98;Similarity=0.98;Relat_Length=1.0;Relat_Interruptions=1.67;Hit_to_DB_Length=1.0
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
40 Vvinifera145_640 dante protein_domain 4507 4908 760 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RH__REXdb_ID2615|Class_I|LTR|Ty1/copia|Bianca:4507-4908[100percent];Best_Hit_DB_Pos=1:134of134;DB_Seq=DAGYFSDPHKGRSxIRYVFNCNGTAISWRSVKQTMVVTSSNHSEILAIHEASRECIWLRSMIQHIRESCGLSSIKGDPTILFEDNVACIAQIAEGYIKGDRTKHISPKFFYTHELQKSGEIDVQQIRSSDNLAD;Query_Seq=DAGYFSDPHKGRS*IRYVFNCNGTAISWRSVKQTMVVTSSNHSEILAIHEASRECIWLRSMIQHIRESCGLSSIKGDPTILFEDNVACIAQIAEGYIKGDRTKHISPKFFYTHELQKSGEIDVQQIRSSDNLAD;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=0.5;Hit_to_DB_Length=1.0
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
41 Fexcel_5 dante protein_domain 527 859 447 + . Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-GAG__REXdb_ID3008|Class_I|LTR|Ty1/copia|Ivana:581-859[83percent];Best_Hit_DB_Pos=1:93of93;DB_Seq=LFQSIDKSILKTIAQKETPKQLWDSMKVKYQGNARVQRAQLQILRRNFEVLEMKLGESVTNYFARVMLVANDMRNLGENMPDVKIVEKILRTL;Query_Seq=LFHSIDKSILKTITQKETSRQLWESMRIKYQGNARVQRAQLQTLRRDFEVLEMKLGESMTNYFARVMLVANDMRNCGEDMPDVKIVEKILRTL;Identity=0.87;Similarity=0.96;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
42 Fexcel_5 dante protein_domain 1241 1453 312 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-PROT__REXdb_ID3199|Class_I|LTR|Ty1/copia|Ivana:1241-1453[100percent];Best_Hit_DB_Pos=1:71of71;DB_Seq=WFLDSGCSNHMTGDKQWFVHLDETFRHTVKLGNNTKMTVMGKGSIKLRVNGINQVITEVYYLPELKNNLLS;Query_Seq=WFLDSGCSNHMTGNKQWFTELDEGYRHSVKLGNNMKMAVMGKGSIKLQVGEVKQVVSDVYYIPDLKNNLLS;Identity=0.75;Similarity=0.89;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
43 Fexcel_5 dante protein_domain 1646 2281 875 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-INT__REXdb_ID3824|Class_I|LTR|Ty1/copia|Ivana:1646-2245[94percent];Best_Hit_DB_Pos=1:200of200;DB_Seq=HCRYGHLSFKGLRTLQYKKMVRGLPQLKASSKVCTDCMVGKQHRDAIPKRSLWRASQRLQLVHADICEPIKPVSNSKKRYLISFIDDYSRKVWIYFLTEKSEAFTTFKNYKNLVEKETGAFICCLRTDRGGEFTSLEFNAFCKTNGISRQLTAAYTPQQNGVAERKNRTIMNMVRSMLSEKQVPKNFWPEAVNWTAHVLN;Query_Seq=HQRFGHLSHKGLLTLQCKKLVKGLPQFKSTSRVCTICMIGKQHRDTIPKKSKWRASERLQLIHADICGPVTPTSNSGKRYMLSFIDDYSRKIWVYFLVEKSETFAWFKVFKSLVEKELGLYICCLRTDRGGEFTSKEFNEFCTVHGIKRQLTTAYTPQQNGVAERKNRTIMNMVRCLLTEKKIPKAFWPEAVKWTAHILN;Identity=0.74;Similarity=0.85;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
44 Fexcel_5 dante protein_domain 2849 3641 1121 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RT__REXdb_ID3636|Class_I|LTR|Ty1/copia|Ivana:2864-3633[97percent];Best_Hit_DB_Pos=1:257of257;DB_Seq=WKAAMDLEIDAIVKNRTWDLVDLPMGAKKIGVKWVYKTKLNENGEVDKYKARLVAKGYAQEHGIDYNEVFAPVARWDTIRMV-LAVAAQKGWMVFQLDVKSAFLHGDLKEAVFVEQPQGYEQEGSKEKVYKLKKALYGLKQAPRAWYSKIENYFLKEGFERCNHESTLFVKTNAGGKVLIISLYVDDLIFTGNDACLIEKFKCSMKSEFEMTDLGKMRYFLGVEVLQSAKGIHLCQKKYANDVLNRFGMKECNPVKNP;Query_Seq=WRSAMDLEIESIIKNKTWELVDLPVGAKRIGVKWVYKTKLNEKGEFDKCKARLVAKGYAQEYGIDYNEVFAPVARWDTIRMG/LALAAQKGWTVFQLDVKSAFLHGELREAVYVDQPLGYIKEGEENKVYKLKKALYGLKQAPRAWYSRIEGYFVKAGFEKCSYEHTLFIKVEGEGKILIVSLYVDDLIFTGNDVCMIENFKSSMMHEFEMTDLGKMKYFLGVEIKQSVEGIHLCQSKYAREVLDRFGMANSNPVRNP;Identity=0.76;Similarity=0.88;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
45 Fexcel_5 dante protein_domain 3661 3774 114 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RH__REXdb_ID3204|Class_I|LTR|Ty1/copia|Ivana:3661-3774[100percent];Best_Hit_DB_Pos=1:38of134;DB_Seq=DDGADKVDEAIYRSLIGCLMYLTATRPDIMHAVSLLSK;Query_Seq=EDGGAEVDGTLYKQLVGSLMYLNATRPDLMYVVCLISR;Identity=0.53;Similarity=0.76;Relat_Length=0.284;Relat_Interruptions=0.0;Hit_to_DB_Length=0.28
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
46 Fexcel_5 dante protein_domain 3901 4281 568 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RH__REXdb_ID3539|Class_I|LTR|Ty1/copia|Ivana:3901-4281[100percent];Best_Hit_DB_Pos=1:127of127;DB_Seq=DSDYAGDTEDRRSTSGYVFLLSGGAVAWSSRKQPVVTLSTTEAEYVAAAACACHSIWMKRVLNSLGFSSCKCVKIFCDNSSTIKLSKNPVLHGRTKHIDIKFHFLRDLVKEGVVELVHCGTSEQMAD;Query_Seq=DSDYAGDSDDSRSTSGFAFMLSGGAVSWSSRKQSVVTLSTTEAEYVAAAACACQSIWMQRVFNKLSHTQCKCVTIFCDNSSTIKLSKNPVFHGRSKHINVRFHFLRDLTKDGIVKLEFCGSSEQLAD;Identity=0.76;Similarity=0.9;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
47 Pabies_54 dante protein_domain 1207 1476 481 + . Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Gymco-II;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Gymco-II;Best_Hit=Ty1-GAG__REXdb_ID2667|Class_I|LTR|Ty1/copia|Gymco-II:1207-1476[100percent];Best_Hit_DB_Pos=1:90of90;DB_Seq=IADSINDHLIPCVSSKNTLKEMFDSLSKLYEGKNINRKMNLRSQLKNTKMQKGETIQEYFSRISEIKKQxKAIGDSIDEDEFVMTALNGL;Query_Seq=IADSINDHLIPCVSSKNTLKEMFDSLSKLYEGKNINRKMNLRSQLKNTKMQKGETIQEYFSRISEIKKQ*KAIGDSIDEDEFVMTALNGL;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.0
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
48 Pabies_54 dante protein_domain 1966 2183 374 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Gymco-II;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Gymco-II;Best_Hit=Ty1-PROT__REXdb_ID2667|Class_I|LTR|Ty1/copia|Gymco-II:1966-2183[100percent];Best_Hit_DB_Pos=1:73of73;DB_Seq=WLIDSGASKHMTRx-ESTLSCISENKFSQKVTLGDDYQYPIKGVGESNYKLDSENSIKMKDVLYVPGLKKNLLS;Query_Seq=WLIDSGASKHMTGK/ESTLSCISENKFSQKVTLGDDYQYPIKGVGESNYKLDSENSIKMKDVLYVPGLKKNLLS;Identity=0.96;Similarity=0.96;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.01
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
49 Pabies_54 dante protein_domain 2370 3035 1130 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Gymco-II;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Gymco-II;Best_Hit=Ty1-INT__REXdb_ID2667|Class_I|LTR|Ty1/copia|Gymco-II:2370-2963[89percent];Best_Hit_DB_Pos=1:198of198;DB_Seq=HRRLAHINYKALPYICKVVTGLPELKVDQEGICNGCAQGKNIKNPFPKRDSKAEGVLELIHSDVCGPMPSSSISGYVYYVSFIDDYSRKTWIYFLKSKDEVFSKFKEFKALIENLSERKIKILRSDNGGAYTSKEFVNFCRDVGINKELTTPYNPQQNGVAERKNRTIMEVVKTMIHDQDLPMCLWAEAAMAVVYVQN;Query_Seq=HRRLAHINYKALPYICKVVTGLPELKVDQEGICNGCAQGKNIKNPFPKRDSKAEGVLELIHSDVCGPMPSSSISGYVYYVSFIDDYSRKTWIYFLKSKDEVFSKFKEFKALIENLSERKIKILRSDNGGAYTSKEFVNFCRDVGINKELTTPYNPQQNGVAERKNRTIMEVVKTMIHDQDLPMCLWAEAAMAVVYVQN;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
50 Pabies_54 dante protein_domain 3600 4315 1347 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Gymco-II;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Gymco-II;Best_Hit=Ty1-RT__REXdb_ID2667|Class_I|LTR|Ty1/copia|Gymco-II:3600-4315[100percent];Best_Hit_DB_Pos=1:239of239;DB_Seq=WADAMTEEYQSIIKNDVWQIVPKPKSKDMVSSKWLFKIKHAADGSIEKYKARFVPRGFSQKEGIDYEETFAPVARYTSIRTIIALAAKMKWKLHQMYVKTTFLNGVIEEEVYIEQPQGFEVEDRKSHVCRLKKALYRLKQAPRAWYGRIDSFLTSLGFTKSKVDSNLYFKIMNDEPVILLLYVDDLFLTREEKIITEC-HYFLGLEVWQSPERIFLNQGKYTVEILKRFDMLECKPMNTP;Query_Seq=WADAMTEEYQSIIKNDVWQIVPKPKSKDMVSSKWLFKIKHAADGSIEKYKARFVPRGFSQKEGIDYEETFAPVARYTSIRTIIALAAKMKWKLHQMYVKTTFLNGVIEEEVYIEQPQGFEVEDRKSHVCRLKKALYRLKQAPRAWYGRIDSFLTSLGFTKSKVDSNLYFKIMNDEPVILLLYVDDLFLTREEKIITEC/HYFLGLEVWQSPERIFLNQGKYTVEILKRFDMLECKPMNTP;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
51 Pabies_54 dante protein_domain 4343 4456 102 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RH__REXdb_ID3204|Class_I|LTR|Ty1/copia|Ivana:4343-4456[100percent];Best_Hit_DB_Pos=1:38of134;DB_Seq=DDGADKVDEAIYRSLIGCLMYLTATRPDIMHAVSLLSK;Query_Seq=DTSSDLIDATLYRQIIGLLMYLTNTRPNICFAVNTLSQ;Identity=0.53;Similarity=0.68;Relat_Length=0.284;Relat_Interruptions=0.0;Hit_to_DB_Length=0.28
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
52 Pabies_54 dante protein_domain 4583 4966 675 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Gymco-II;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Gymco-II;Best_Hit=Ty1-RH__REXdb_ID2667|Class_I|LTR|Ty1/copia|Gymco-II:4583-4966[100percent];Best_Hit_DB_Pos=1:128of128;DB_Seq=DSDWAGSVADRKSTSGCCFSLGSAMISWQSRKQSSVALSIAEAEYIVACSASCEAIWLRKLLIGLF-DLEMEATTILCDNQSCIKM-XXXNPVFHDRSKHIEIRYHYIRDMVQRGALKLQYISTDEQVAD;Query_Seq=DSDWAGSVADRKSTSGCCFSLGSAMISWQSRKQSSVALSIAEAEYIVACSASCEAIWLRKLLIGLL/DLEMEATTILCDNQSCIKM\XXXNPVFHDRSKHIEIRYHYIRDMVQRGALKLQYISTDEQVAD;Identity=0.95;Similarity=0.95;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.02
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
53 Wicker_Bianca_AF521177-1 dante protein_domain 683 830 86 + . Name=RH;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Region_Hits_Classifications=RH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Best_Hit=Ty3-RH__REXdb_ID8306|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:683-830[100percent];Best_Hit_DB_Pos=57:105of253;DB_Seq=SAHPHPVSTRPG-REQGGEAPEPNGGLRPPTAGAGPPPACPTVPGAPDPQ;Query_Seq=SHHPHLEHPDQG\EEEGMEAMGSSSSLRPPSPAIPPPPPAPPLPLTPPPE;Identity=0.4;Similarity=0.48;Relat_Length=0.194;Relat_Interruptions=1.0;Hit_to_DB_Length=0.2
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
54 Wicker_Bianca_AF521177-1 dante protein_domain 2214 2483 350 + . Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-GAG__REXdb_ID2562|Class_I|LTR|Ty1/copia|Bianca:2214-2483[100percent];Best_Hit_DB_Pos=1:90of90;DB_Seq=LRHHLHPDLKSEYMTEKDPLVLWQSLKDRFDQQGSIVLPQAQHDWITLRFQDYKSVAAYNSALHRIISQLRLCGQKITDAEMIEKTLSTF;Query_Seq=LRHHLHSDLKSEYLMEEDPLVLWNSLKERYDQQRAVMLPEAQREWSLIRFQDFKSVAAYNSAVHKVNSKLRFCNQEISEEDLIEKTLCTF;Identity=0.64;Similarity=0.87;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
55 Wicker_Bianca_AF521177-1 dante protein_domain 3336 3548 307 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-PROT__REXdb_ID2563|Class_I|LTR|Ty1/copia|Bianca:3336-3548[100percent];Best_Hit_DB_Pos=1:71of71;DB_Seq=CLVDSCTTNSILRETKYFQTLTKRTGNVLTIAGRDATIVGSGRATITLPMGTQVTIEDALLYPDSTRTLLS;Query_Seq=CLVDSCTSNTILREIKYFQTLTKRKGNIMTIDSRDASIIGSGRATLVLPMGSTIAIEDALLYPQSTRTLLS;Identity=0.76;Similarity=0.89;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
56 Wicker_Bianca_AF521177-1 dante protein_domain 3762 4370 921 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-INT__REXdb_ID2589|Class_I|LTR|Ty1/copia|Bianca:3762-4370[100percent];Best_Hit_DB_Pos=1:203of203;DB_Seq=HDRLGHPGIGMMRKIISNSNGHELNTAKFPKSSDFMCTSCATGKLILRPSPVKIQNEPLKFLERIQGDICGPIQPTSGPFRYFMVLIDASTRWSHVCLLSTRNHAFAKIIAQLIKLRAHNPEHQIQSIRMDNAAEFSSKAFNDYCMALGIQVQHSVPYVHTQNGLAESLIKRIKLIARPLIQNCNLPTSCWGHAVLHAADLIQ;Query_Seq=HDRLGHPGVGMMTKIIDNSIGHSLPTINFSKLSDFVCTACATGKLIIKPSYLKVKNESLNFLERIQGDICGPIQALSGPFRYFMVLIYASTRWSHVCLLSTRNHAFSQLIDQIIKLRANHPKNRIKTIRMDNAAEFSSRAFNDYCMAMGIHLEHFVPYVHTQNGLAESLIKRVKLVARPLLQNCNLPASCWAHAVLHAADLIQ;Identity=0.77;Similarity=0.89;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
57 Wicker_Bianca_AF521177-1 dante protein_domain 5271 6058 1172 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RT__REXdb_ID2589|Class_I|LTR|Ty1/copia|Bianca:5280-6058[98percent];Best_Hit_DB_Pos=1:260of260;DB_Seq=WKEAIKAEIASLTKRGVFTKAIPTPSKVFPVGFKWVFVRKRNENNEVVRYKARLVAQGFTQRPGIDYNETYSPVMSGITFRYLISLAVQNHLSMQLMDVVTAYLYGSLDSDIYMKVPDGIQIPNPNANRNMYCVKLQKSLYGLKQSGRMWYNRLSEFLLNKGYTNNDDCPCVFIKKSQTGFCIISVYVDDLNIIGSPKDIEEARKHL-KTEFEMKDLGKTKYCLGLQIEHRPLGILVHQSAYIQKILEKFNMDKSYPNKTP;Query_Seq=WKEAIEAEVRSLNKREVFSSVIPTPHNVFPVGAKWVFVRKRNENNEVVRYKARLVAQGFTQRPDIDYDDTYSPVMSGITFRYLISLAVQMNLSMQLMDVVTTYLYGSLKSDIYMKVPE*LKMSNPKENRNAYCVKLQKSLYGLKQSGRMWYNRLSEFLIQKGYSNNDDCPCVLIKKSSNGFCIISVYVDDLNIMGSTPDIEEAHNHL/NGEFEMKDLGKTKFCLGLQLEHLPSGILVYQPAYIQKVLENFNMDKSYPTKTP;Identity=0.81;Similarity=0.87;Relat_Length=1.0;Relat_Interruptions=0.67;Hit_to_DB_Length=1.0
77d9f2ecb28a Uploaded
petr-novak
parents:
diff changeset
58 Wicker_Bianca_AF521177-1 dante protein_domain 6353 6767 384 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RH__REXdb_ID2595|Class_I|LTR|Ty1/copia|Bianca:6353-6767[100percent];Best_Hit_DB_Pos=1:133of133;DB_Seq=DAGYLSDPHNARSQSGFVFLHGGTAISWKSSKQTLVATSTNHS-EIISLFEASRECVWLRRMINHIQKSCGIGSIESPTIIYEDNAACVAQMQTRYIKTNI---TKHISPKWFFPHVLQKKGEINIL--QIKSCENLAD;Query_Seq=DXCYLSDPHNVRSQTGFVFLYGGTAFSWKSTKQTLLATSTNHS\ELVAFFEAS*DCVWLRRMINPIQTSCGVGSLGSPTIIYEDNAASPLSQNANVVYVRK*YPHTYILPKVILILSALQKGWRNLIFSQIKSCANLAD;Identity=0.59;Similarity=0.7;Relat_Length=1.0;Relat_Interruptions=1.5;Hit_to_DB_Length=1.05