Mercurial > repos > petr-novak > dante

annotate dante_gff_to_tabular.xml @ 14:a6c55d1bdb6c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author petr-novak
date Wed, 28 Aug 2019 08:08:47 -0400
parents ddc6bab20889
children e2bbc79f0fac
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
12
ddc6bab20889 Uploaded
petr-novak
parents:
diff changeset
1 <tool id="gff_to_tabular" name="Convert dante gff3 to tab delimited file" version="0.1.0" python_template_version="3.5">
ddc6bab20889 Uploaded
petr-novak
parents:
diff changeset
2 <requirements>
ddc6bab20889 Uploaded
petr-novak
parents:
diff changeset
3 <requirement type="package">R</requirement>
ddc6bab20889 Uploaded
petr-novak
parents:
diff changeset
4 </requirements>
ddc6bab20889 Uploaded
petr-novak
parents:
diff changeset
5 <command detect_errors="exit_code"><![CDATA[
ddc6bab20889 Uploaded
petr-novak
parents:
diff changeset
6 Rscript ${__tool_directory__}/summarize_gff.R '$inputgff' '$output'
ddc6bab20889 Uploaded
petr-novak
parents:
diff changeset
7 ]]></command>
ddc6bab20889 Uploaded
petr-novak
parents:
diff changeset
8 <inputs>
ddc6bab20889 Uploaded
petr-novak
parents:
diff changeset
9 <param type="data" name="inputgff" format="gff3" />
ddc6bab20889 Uploaded
petr-novak
parents:
diff changeset
10 </inputs>
ddc6bab20889 Uploaded
petr-novak
parents:
diff changeset
11 <outputs>
ddc6bab20889 Uploaded
petr-novak
parents:
diff changeset
12 <data name="output" format="tabular" />
ddc6bab20889 Uploaded
petr-novak
parents:
diff changeset
13 </outputs>
ddc6bab20889 Uploaded
petr-novak
parents:
diff changeset
14 <help><![CDATA[
ddc6bab20889 Uploaded
petr-novak
parents:
diff changeset
15 TODO: Fill in help.
ddc6bab20889 Uploaded
petr-novak
parents:
diff changeset
16 ]]></help>
ddc6bab20889 Uploaded
petr-novak
parents:
diff changeset
17 </tool>