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1 # MIQS scoring matrix
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2 A R N D C Q E G H I L K M F P S T W Y V B J Z X *
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3 A 3 -1 0 0 2 0 0 0 -1 -1 -1 -1 -1 -2 0 1 1 -4 -2 0 0 -1 0 -1 -6
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4 R -1 6 0 -1 -3 2 -1 -2 1 -2 -3 3 -1 -3 -1 0 -1 -4 -2 -2 -1 -2 -1 -1 -6
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5 N 0 0 5 3 -2 1 1 0 1 -4 -4 1 -2 -3 -1 1 0 -5 -1 -3 4 -4 1 -1 -6
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6 D 0 -1 3 6 -4 1 3 -1 0 -5 -5 0 -3 -6 0 0 0 -5 -4 -3 5 -5 3 -1 -6
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7 C 2 -3 -2 -4 12 -3 -3 -2 -1 0 -2 -3 0 -3 -3 1 0 -6 -1 2 -3 -1 -3 -1 -6
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8 Q 0 2 1 1 -3 4 2 -2 1 -2 -2 2 0 -2 0 0 0 -5 -3 -2 1 -2 2 -1 -6
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9 E 0 -1 1 3 -3 2 4 -1 0 -3 -3 1 -2 -4 0 0 0 -6 -2 -2 2 -3 4 -1 -6
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10 G 0 -2 0 -1 -2 -2 -1 8 -2 -5 -5 -2 -4 -5 -2 0 -2 -5 -4 -4 -1 -5 -1 -1 -6
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11 H -1 1 1 0 -1 1 0 -2 7 -2 -2 0 -2 0 -2 0 0 0 2 -2 0 -2 0 -1 -6
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12 I -1 -2 -4 -5 0 -2 -3 -5 -2 5 3 -2 2 1 -4 -3 -1 -1 -1 3 -5 4 -3 -1 -6
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13 L -1 -3 -4 -5 -2 -2 -3 -5 -2 3 5 -2 3 2 -3 -3 -2 0 0 2 -5 4 -3 -1 -6
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14 K -1 3 1 0 -3 2 1 -2 0 -2 -2 4 -1 -4 0 0 0 -4 -2 -2 0 -2 1 -1 -6
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15 M -1 -1 -2 -3 0 0 -2 -4 -2 2 3 -1 5 1 -3 -2 -1 -2 -1 1 -3 3 -2 -1 -6
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16 F -2 -3 -3 -6 -3 -2 -4 -5 0 1 2 -4 1 7 -4 -3 -2 4 5 0 -5 2 -4 -1 -6
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17 P 0 -1 -1 0 -3 0 0 -2 -2 -4 -3 0 -3 -4 8 0 0 -4 -5 -3 0 -3 0 -1 -6
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18 S 1 0 1 0 1 0 0 0 0 -3 -3 0 -2 -3 0 3 2 -4 -2 -1 0 -3 0 -1 -6
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19 T 1 -1 0 0 0 0 0 -2 0 -1 -2 0 -1 -2 0 2 4 -5 -2 0 0 -1 0 -1 -6
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20 W -4 -4 -5 -5 -6 -5 -6 -5 0 -1 0 -4 -2 4 -4 -4 -5 15 5 -3 -5 0 -6 -1 -6
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21 Y -2 -2 -1 -4 -1 -3 -2 -4 2 -1 0 -2 -1 5 -5 -2 -2 5 8 -1 -3 0 -2 -1 -6
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22 V 0 -2 -3 -3 2 -2 -2 -4 -2 3 2 -2 1 0 -3 -1 0 -3 -1 4 -3 3 -2 -1 -6
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23 B 0 -1 4 5 -3 1 2 -1 0 -5 -5 0 -3 -5 0 0 0 -5 -3 -3 5 -5 2 -1 -6
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24 J -1 -2 -4 -5 -1 -2 -3 -5 -2 4 4 -2 3 2 -3 -3 -1 0 0 3 -5 4 -1 -1 -6
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25 Z 0 -1 1 3 -3 2 4 -1 0 -3 -3 1 -2 -4 0 0 0 -6 -2 -2 2 -1 4 -1 -6
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26 X -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -6 -6
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27 * -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 1 |