Mercurial > repos > petr-novak > dante
comparison dante_gff_to_dna.xml @ 26:02c6dff8c381 draft
planemo upload commit 202571c71948c191243774cbc5547b3e405b8132-dirty
author | petr-novak |
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date | Tue, 31 Jan 2023 15:58:34 +0000 |
parents | df99812ded92 |
children | 064d80d1fa28 |
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25:74babe57d739 | 26:02c6dff8c381 |
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1 <tool id="domains_extract" name="Extract Domains Nucleotide Sequences" version="1.1.5"> | 1 <tool id="domains_extract" name="Extract Domains Nucleotide Sequences" version="1.1.7"> |
2 <description> Tool to extract nucleotide sequences of protein domains found by DANTE </description> | 2 <description> Tool to extract nucleotide sequences of protein domains found by DANTE </description> |
3 <requirements> | 3 <requirements> |
4 <requirement type="package">dante=0.1.5</requirement> | 4 <requirement type="package">dante=0.1.7</requirement> |
5 </requirements> | 5 </requirements> |
6 <command> | 6 <command> |
7 TEMP_DIR_LINEAGES=\$(mktemp -d) && | 7 TEMP_DIR_LINEAGES=\$(mktemp -d) && |
8 /mnt/raid/users/petr/workspace/dante/dante_gff_to_dna.py --domains_gff ${domains_gff} --input_dna ${input_dna} --out_dir \$TEMP_DIR_LINEAGES | 8 /mnt/raid/users/petr/workspace/dante/dante_gff_to_dna.py --domains_gff ${domains_gff} --input_dna ${input_dna} --out_dir \$TEMP_DIR_LINEAGES |
9 | 9 |