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comparison dante_gff_to_dna.xml @ 20:31449f1183d8 draft

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author petr-novak
date Tue, 24 Sep 2019 08:04:09 -0400
parents b34483adf8f0
children 65a6fb89495d
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19:b34483adf8f0 20:31449f1183d8
1 <tool id="domains_extract" name="Extract Domains Nucleotide Sequences" version="1.0.0"> 1 <tool id="domains_extract" name="Extract Domains Nucleotide Sequences" version="1.0.0">
2 <description> Tool to extract nucleotide sequences of protein domains found by DANTE </description> 2 <description> Tool to extract nucleotide sequences of protein domains found by DANTE </description>
3 <requirements> 3 <requirements>
4 <requirement type="package">biopython</requirement> 4 <requirement type="package">biopython</requirement>
5 <requirement type="package" version="1.0">rexdb</requirement>
5 <requirement type="set_environment">REXDB</requirement> 6 <requirement type="set_environment">REXDB</requirement>
6 </requirements> 7 </requirements>
7 <command> 8 <command>
8 TEMP_DIR_LINEAGES=\$(mktemp -d) &amp;&amp; 9 TEMP_DIR_LINEAGES=\$(mktemp -d) &amp;&amp;
9 python3 ${__tool_directory__}/dante_gff_to_dna.py --domains_gff ${domains_gff} --input_dna ${input_dna} --out_dir \$TEMP_DIR_LINEAGES 10 python3 ${__tool_directory__}/dante_gff_to_dna.py --domains_gff ${domains_gff} --input_dna ${input_dna} --out_dir \$TEMP_DIR_LINEAGES