Mercurial > repos > petr-novak > dante

comparison dante_gff_to_dna.xml @ 21:65a6fb89495d draft

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author petr-novak
date Tue, 24 Sep 2019 08:12:01 -0400
parents 31449f1183d8
children e2bbc79f0fac
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20:31449f1183d8 21:65a6fb89495d
15 --extended False 15 --extended False
16 #end if 16 #end if
17 --classification \${REXDB}/${db_type}_class 17 --classification \${REXDB}/${db_type}_class
18 && 18 &&
19 19
20 cat \$TEMP_DIR_LINEAGES/domains_counts.txt \$TEMP_DIR_LINEAGES/*fasta > $out_fasta && 20 cat \$TEMP_DIR_LINEAGES/*fasta > $out_fasta &&
21 rm -rf \$TEMP_DIR_LINEAGES 21 rm -rf \$TEMP_DIR_LINEAGES
22 </command> 22 </command>
23 <inputs> 23 <inputs>
24 <param format="fasta" type="data" name="input_dna" label="Input DNA" help="Choose input DNA sequence(s) to extract the domains from" /> 24 <param format="fasta" type="data" name="input_dna" label="Input DNA" help="Choose input DNA sequence(s) to extract the domains from" />
25 <param format="gff" type="data" name="domains_gff" label="Protein domains GFF" help="Choose filtered protein domains GFF3 (DANTE's output)" /> 25 <param format="gff" type="data" name="domains_gff" label="Protein domains GFF" help="Choose filtered protein domains GFF3 (DANTE's output)" />