Mercurial > repos > petr-novak > dante
comparison dante_gff_to_dna.xml @ 21:65a6fb89495d draft
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author | petr-novak |
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date | Tue, 24 Sep 2019 08:12:01 -0400 |
parents | 31449f1183d8 |
children | e2bbc79f0fac |
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20:31449f1183d8 | 21:65a6fb89495d |
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15 --extended False | 15 --extended False |
16 #end if | 16 #end if |
17 --classification \${REXDB}/${db_type}_class | 17 --classification \${REXDB}/${db_type}_class |
18 && | 18 && |
19 | 19 |
20 cat \$TEMP_DIR_LINEAGES/domains_counts.txt \$TEMP_DIR_LINEAGES/*fasta > $out_fasta && | 20 cat \$TEMP_DIR_LINEAGES/*fasta > $out_fasta && |
21 rm -rf \$TEMP_DIR_LINEAGES | 21 rm -rf \$TEMP_DIR_LINEAGES |
22 </command> | 22 </command> |
23 <inputs> | 23 <inputs> |
24 <param format="fasta" type="data" name="input_dna" label="Input DNA" help="Choose input DNA sequence(s) to extract the domains from" /> | 24 <param format="fasta" type="data" name="input_dna" label="Input DNA" help="Choose input DNA sequence(s) to extract the domains from" /> |
25 <param format="gff" type="data" name="domains_gff" label="Protein domains GFF" help="Choose filtered protein domains GFF3 (DANTE's output)" /> | 25 <param format="gff" type="data" name="domains_gff" label="Protein domains GFF" help="Choose filtered protein domains GFF3 (DANTE's output)" /> |