Mercurial > repos > petr-novak > dante

comparison dante.xml @ 25:74babe57d739 draft

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"planemo upload commit a0a9b02c60a91942a271b8b35648c0b152fe1ebd-dirty"
author petr-novak
date Fri, 27 Jan 2023 09:28:06 +0000
parents df99812ded92
children 02c6dff8c381
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24:df99812ded92 25:74babe57d739
19 19
20 dante --query \${INPUT_SEQUENCES} --domain_gff ${DomGff} 20 dante --query \${INPUT_SEQUENCES} --domain_gff ${DomGff}
21 --database $database 21 --database $database
22 --scoring_matrix ${scoring_matrix} 22 --scoring_matrix ${scoring_matrix}
23 --cpu \${GALAXY_SLOTS:-1} 23 --cpu \${GALAXY_SLOTS:-1}
24 &&
24 dante_gff_output_filtering.py --dom_gff ${DomGff} 25 dante_gff_output_filtering.py --dom_gff ${DomGff}
25 --domains_prot_seq ${Domains_filtered} --domains_filtered ${DomGff_filtered} 26 --domains_prot_seq ${Domains_filtered} --domains_filtered ${DomGff_filtered}
26 --output_dir . 27 --output_dir .
27 --selected_dom All --th_identity 0.35 28 --selected_dom All --th_identity 0.35
28 --th_similarity 0.45 --th_length 0.8 29 --th_similarity 0.45 --th_length 0.8