Mercurial > repos > petr-novak > dante
comparison configuration.py @ 8:cc10173bd0c5 draft
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author | petr-novak |
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date | Wed, 03 Jul 2019 08:10:33 -0400 |
parents | 888361a4a39c |
children | ed4d9ede9cb4 |
comparison
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7:888361a4a39c | 8:cc10173bd0c5 |
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115 | 115 |
116 ######### DANTE ############################################## | 116 ######### DANTE ############################################## |
117 MAIN_GIT_DIR = os.path.dirname(os.path.realpath(__file__)) | 117 MAIN_GIT_DIR = os.path.dirname(os.path.realpath(__file__)) |
118 TOOL_DATA = os.path.join(MAIN_GIT_DIR, "tool-data") | 118 TOOL_DATA = os.path.join(MAIN_GIT_DIR, "tool-data") |
119 TMP = "tmp" | 119 TMP = "tmp" |
120 SC_MATRIX = os.path.join(TOOL_DATA, "blosum80.txt") | 120 SC_MATRIX = os.path.join(TOOL_DATA, "blosum80.txt.sample") |
121 AMBIGUOUS_TAG = "Ambiguous_domain" | 121 AMBIGUOUS_TAG = "Ambiguous_domain" |
122 ## IO | 122 ## IO |
123 CLASS_FILE = "ALL.classification-new" | 123 CLASS_FILE = "ALL.classification-new" |
124 LAST_DB_FILE = "ALL_protein-domains_05.fasta" | 124 LAST_DB_FILE = "ALL_protein-domains_05.fasta" |
125 DOM_PROT_SEQ = "dom_prot_seq.fa" | 125 DOM_PROT_SEQ = "dom_prot_seq.fa" |