Mercurial > repos > petr-novak > dante

comparison configuration.py @ 10:d0431a839606 draft

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author petr-novak
date Wed, 14 Aug 2019 11:24:15 -0400
parents ed4d9ede9cb4
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9:ed4d9ede9cb4 10:d0431a839606
3 import os 3 import os
4 4
5 MAIN_GIT_DIR = os.path.dirname(os.path.realpath(__file__)) 5 MAIN_GIT_DIR = os.path.dirname(os.path.realpath(__file__))
6 TOOL_DATA = os.path.join(MAIN_GIT_DIR, "tool-data") 6 TOOL_DATA = os.path.join(MAIN_GIT_DIR, "tool-data")
7 TMP = "tmp" 7 TMP = "tmp"
8 SC_MATRIX = os.path.join(TOOL_DATA, "blosum80.txt.sample") 8 SC_MATRIX_SKELETON = os.path.join(TOOL_DATA, "{}.txt.sample")
9 AMBIGUOUS_TAG = "Ambiguous_domain" 9 AMBIGUOUS_TAG = "Ambiguous_domain"
10 ## IO 10 ## IO
11 CLASS_FILE = "ALL.classification-new" 11 CLASS_FILE = "ALL.classification-new"
12 LAST_DB_FILE = "ALL_protein-domains_05.fasta" 12 LAST_DB_FILE = "ALL_protein-domains_05.fasta"
13 DOM_PROT_SEQ = "dom_prot_seq.fa" 13 DOM_PROT_SEQ = "dom_prot_seq.fa"