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comparison dante_pyan_scheme.svg @ 10:d0431a839606 draft

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author petr-novak
date Wed, 14 Aug 2019 11:24:15 -0400
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9:ed4d9ede9cb4 10:d0431a839606
1 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 <!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
3 "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
4 <!-- Generated by graphviz version 2.36.0 (20140111.2315)
5 -->
6 <!-- Title: G Pages: 1 -->
7 <svg width="2270pt" height="436pt"
8 viewBox="0.00 0.00 2270.00 436.00" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
9 <g id="graph0" class="graph" transform="scale(1 1) rotate(0) translate(4 432)">
10 <title>G</title>
11 <polygon fill="white" stroke="none" points="-4,4 -4,-432 2266,-432 2266,4 -4,4"/>
12 <g id="clust1" class="cluster"><title>cluster_G</title>
13 <path fill="#808080" fill-opacity="0.094118" stroke="black" d="M20,-8C20,-8 2242,-8 2242,-8 2248,-8 2254,-14 2254,-20 2254,-20 2254,-408 2254,-408 2254,-414 2248,-420 2242,-420 2242,-420 20,-420 20,-420 14,-420 8,-414 8,-408 8,-408 8,-20 8,-20 8,-14 14,-8 20,-8"/>
14 </g>
15 <!-- dante -->
16 <g id="node1" class="node"><title>dante</title>
17 <ellipse fill="#ffffff" fill-opacity="0.698039" stroke="black" cx="1004" cy="-394" rx="29.3479" ry="18"/>
18 <text text-anchor="middle" x="1004" y="-390.3" font-family="Times,serif" font-size="14.00" fill="#000000">dante</text>
19 </g>
20 <!-- dante__CustomFormatter -->
21 <g id="node2" class="node"><title>dante__CustomFormatter</title>
22 <ellipse fill="#fecccc" fill-opacity="0.698039" stroke="black" cx="89" cy="-322" rx="73.1654" ry="18"/>
23 <text text-anchor="middle" x="89" y="-318.3" font-family="Times,serif" font-size="14.00" fill="#000000">CustomFormatter</text>
24 </g>
25 <!-- dante&#45;&gt;dante__CustomFormatter -->
26 <g id="edge4" class="edge"><title>dante&#45;&gt;dante__CustomFormatter</title>
27 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M974.471,-392.552C866.016,-390.536 480.929,-380.546 167,-340 160.79,-339.198 154.356,-338.221 147.963,-337.146"/>
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29 </g>
30 <!-- dante&#45;&gt;dante__CustomFormatter -->
31 <g id="edge21" class="edge"><title>dante&#45;&gt;dante__CustomFormatter</title>
32 <path fill="none" stroke="#000000" d="M974.392,-392.41C867.401,-390.09 492.144,-379.67 185,-340 175.598,-338.786 165.683,-337.171 155.921,-335.42"/>
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34 </g>
35 <!-- dante__adjust_gff -->
36 <g id="node3" class="node"><title>dante__adjust_gff</title>
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38 <text text-anchor="middle" x="505" y="-174.3" font-family="Times,serif" font-size="14.00" fill="#000000">adjust_gff</text>
39 </g>
40 <!-- dante&#45;&gt;dante__adjust_gff -->
41 <g id="edge7" class="edge"><title>dante&#45;&gt;dante__adjust_gff</title>
42 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M977.391,-385.915C943.907,-376.703 884.868,-359.47 836,-340 821.049,-334.043 624.595,-237.732 541.603,-196.983"/>
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44 </g>
45 <!-- dante__alignment_scoring -->
46 <g id="node4" class="node"><title>dante__alignment_scoring</title>
47 <ellipse fill="#fecccc" fill-opacity="0.698039" stroke="black" cx="219" cy="-34" rx="76.5394" ry="18"/>
48 <text text-anchor="middle" x="219" y="-30.3" font-family="Times,serif" font-size="14.00" fill="#000000">alignment_scoring</text>
49 </g>
50 <!-- dante&#45;&gt;dante__alignment_scoring -->
51 <g id="edge20" class="edge"><title>dante&#45;&gt;dante__alignment_scoring</title>
52 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M974.566,-392.156C863.693,-388.738 471.497,-374.426 352,-340 269.671,-316.281 181,-336.678 181,-251 181,-251 181,-251 181,-177 181,-137.196 179.276,-126.039 191,-88 193.85,-78.7512 198.325,-69.2277 202.868,-60.8496"/>
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55 <!-- dante__annotations_dict -->
56 <g id="node5" class="node"><title>dante__annotations_dict</title>
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58 <text text-anchor="middle" x="1290" y="-102.3" font-family="Times,serif" font-size="14.00" fill="#000000">annotations_dict</text>
59 </g>
60 <!-- dante&#45;&gt;dante__annotations_dict -->
61 <g id="edge5" class="edge"><title>dante&#45;&gt;dante__annotations_dict</title>
62 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M1033.53,-393.289C1205.7,-394.283 2077.75,-389.63 2235,-196 2245.09,-183.58 2245.99,-171.626 2235,-160 2205.39,-128.688 1589.65,-113.102 1368.35,-108.496"/>
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64 </g>
65 <!-- dante__best_score -->
66 <g id="node6" class="node"><title>dante__best_score</title>
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68 <text text-anchor="middle" x="617" y="-174.3" font-family="Times,serif" font-size="14.00" fill="#000000">best_score</text>
69 </g>
70 <!-- dante&#45;&gt;dante__best_score -->
71 <g id="edge12" class="edge"><title>dante&#45;&gt;dante__best_score</title>
72 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M981.034,-382.622C959.076,-372.467 925.226,-356.204 897,-340 821.311,-296.55 809.361,-274.259 733,-232 708.76,-218.585 680.504,-205.622 657.948,-195.875"/>
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74 </g>
75 <!-- dante__characterize_fasta -->
76 <g id="node7" class="node"><title>dante__characterize_fasta</title>
77 <ellipse fill="#fecccc" fill-opacity="0.698039" stroke="black" cx="757" cy="-178" rx="74.1402" ry="18"/>
78 <text text-anchor="middle" x="757" y="-174.3" font-family="Times,serif" font-size="14.00" fill="#000000">characterize_fasta</text>
79 </g>
80 <!-- dante&#45;&gt;dante__characterize_fasta -->
81 <g id="edge2" class="edge"><title>dante&#45;&gt;dante__characterize_fasta</title>
82 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M987.794,-378.959C946.126,-342.859 834.951,-246.536 783.635,-202.077"/>
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84 </g>
85 <!-- dante__create_gff3 -->
86 <g id="node8" class="node"><title>dante__create_gff3</title>
87 <ellipse fill="#fecccc" fill-opacity="0.698039" stroke="black" cx="271" cy="-178" rx="50.5427" ry="18"/>
88 <text text-anchor="middle" x="271" y="-174.3" font-family="Times,serif" font-size="14.00" fill="#000000">create_gff3</text>
89 </g>
90 <!-- dante&#45;&gt;dante__create_gff3 -->
91 <g id="edge15" class="edge"><title>dante&#45;&gt;dante__create_gff3</title>
92 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M974.704,-390.945C914.316,-386.183 772.011,-372.247 657,-340 523.788,-302.65 375.042,-231.71 307.68,-197.872"/>
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94 </g>
95 <!-- dante__domain_annotation -->
96 <g id="node9" class="node"><title>dante__domain_annotation</title>
97 <ellipse fill="#fecccc" fill-opacity="0.698039" stroke="black" cx="928" cy="-178" rx="78.9404" ry="18"/>
98 <text text-anchor="middle" x="928" y="-174.3" font-family="Times,serif" font-size="14.00" fill="#000000">domain_annotation</text>
99 </g>
100 <!-- dante&#45;&gt;dante__domain_annotation -->
101 <g id="edge19" class="edge"><title>dante&#45;&gt;dante__domain_annotation</title>
102 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M997.993,-376.297C994.246,-365.866 989.33,-352.154 985,-340 968.209,-292.868 948.789,-237.921 937.501,-205.938"/>
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104 </g>
105 <!-- dante__domain_search -->
106 <g id="node10" class="node"><title>dante__domain_search</title>
107 <ellipse fill="#fecccc" fill-opacity="0.698039" stroke="black" cx="1077" cy="-250" rx="64.0172" ry="18"/>
108 <text text-anchor="middle" x="1077" y="-246.3" font-family="Times,serif" font-size="14.00" fill="#000000">domain_search</text>
109 </g>
110 <!-- dante&#45;&gt;dante__domain_search -->
111 <g id="edge9" class="edge"><title>dante&#45;&gt;dante__domain_search</title>
112 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M1005.01,-375.935C1006.73,-357.247 1011.4,-326.891 1024,-304 1030.18,-292.779 1039.44,-282.35 1048.5,-273.765"/>
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114 </g>
115 <!-- dante__filter_params -->
116 <g id="node11" class="node"><title>dante__filter_params</title>
117 <ellipse fill="#fecccc" fill-opacity="0.698039" stroke="black" cx="258" cy="-106" rx="57.2688" ry="18"/>
118 <text text-anchor="middle" x="258" y="-102.3" font-family="Times,serif" font-size="14.00" fill="#000000">filter_params</text>
119 </g>
120 <!-- dante&#45;&gt;dante__filter_params -->
121 <g id="edge13" class="edge"><title>dante&#45;&gt;dante__filter_params</title>
122 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M974.684,-392.285C901.967,-389.928 707.917,-380.066 552,-340 392.662,-299.055 300.959,-333.741 211,-196 197.122,-174.75 214.122,-148.963 231.429,-130.628"/>
123 <polygon fill="#838b8b" stroke="#838b8b" points="234.193,-132.813 238.776,-123.261 229.237,-127.87 234.193,-132.813"/>
124 </g>
125 <!-- dante__get_version -->
126 <g id="node12" class="node"><title>dante__get_version</title>
127 <ellipse fill="#fecccc" fill-opacity="0.698039" stroke="black" cx="1077" cy="-178" rx="51.4931" ry="18"/>
128 <text text-anchor="middle" x="1077" y="-174.3" font-family="Times,serif" font-size="14.00" fill="#000000">get_version</text>
129 </g>
130 <!-- dante&#45;&gt;dante__get_version -->
131 <g id="edge6" class="edge"><title>dante&#45;&gt;dante__get_version</title>
132 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M999.191,-375.849C991.564,-345.083 979.882,-279.315 1004,-232 1011.29,-217.692 1024.46,-206.343 1037.62,-197.878"/>
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134 </g>
135 <!-- dante__group_annot_regs -->
136 <g id="node13" class="node"><title>dante__group_annot_regs</title>
137 <ellipse fill="#fecccc" fill-opacity="0.698039" stroke="black" cx="1221" cy="-178" rx="74.1402" ry="18"/>
138 <text text-anchor="middle" x="1221" y="-174.3" font-family="Times,serif" font-size="14.00" fill="#000000">group_annot_regs</text>
139 </g>
140 <!-- dante&#45;&gt;dante__group_annot_regs -->
141 <g id="edge11" class="edge"><title>dante&#45;&gt;dante__group_annot_regs</title>
142 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M1027.57,-383.191C1047.91,-373.987 1077.34,-358.834 1099,-340 1145.45,-299.62 1185.55,-238.939 1206.18,-204.769"/>
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144 </g>
145 <!-- dante__hits_processing -->
146 <g id="node14" class="node"><title>dante__hits_processing</title>
147 <ellipse fill="#fecccc" fill-opacity="0.698039" stroke="black" cx="1379" cy="-178" rx="65.4659" ry="18"/>
148 <text text-anchor="middle" x="1379" y="-174.3" font-family="Times,serif" font-size="14.00" fill="#000000">hits_processing</text>
149 </g>
150 <!-- dante&#45;&gt;dante__hits_processing -->
151 <g id="edge3" class="edge"><title>dante&#45;&gt;dante__hits_processing</title>
152 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M1027.98,-383.107C1051.74,-373.057 1088.98,-356.642 1120,-340 1204.55,-294.644 1299.18,-232.823 1347.26,-200.577"/>
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154 </g>
155 <!-- dante__line_generator -->
156 <g id="node15" class="node"><title>dante__line_generator</title>
157 <ellipse fill="#fecccc" fill-opacity="0.698039" stroke="black" cx="1524" cy="-178" rx="61.6163" ry="18"/>
158 <text text-anchor="middle" x="1524" y="-174.3" font-family="Times,serif" font-size="14.00" fill="#000000">line_generator</text>
159 </g>
160 <!-- dante&#45;&gt;dante__line_generator -->
161 <g id="edge18" class="edge"><title>dante&#45;&gt;dante__line_generator</title>
162 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M1029.5,-384.775C1059.87,-374.825 1112.03,-357.253 1156,-340 1276.65,-292.653 1416.09,-229.193 1483.43,-197.973"/>
163 <polygon fill="#838b8b" stroke="#838b8b" points="1485.24,-200.992 1492.84,-193.606 1482.29,-194.644 1485.24,-200.992"/>
164 </g>
165 <!-- dante__main -->
166 <g id="node16" class="node"><title>dante__main</title>
167 <ellipse fill="#fecccc" fill-opacity="0.698039" stroke="black" cx="1062" cy="-322" rx="28.3955" ry="18"/>
168 <text text-anchor="middle" x="1062" y="-318.3" font-family="Times,serif" font-size="14.00" fill="#000000">main</text>
169 </g>
170 <!-- dante&#45;&gt;dante__main -->
171 <g id="edge16" class="edge"><title>dante&#45;&gt;dante__main</title>
172 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M1011.91,-376.411C1018.86,-366.746 1028.9,-354.462 1038.25,-344.112"/>
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175 <!-- dante&#45;&gt;dante__main -->
176 <g id="edge22" class="edge"><title>dante&#45;&gt;dante__main</title>
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178 <polygon fill="#000000" stroke="#000000" points="1050.96,-349.613 1054.15,-339.51 1045.36,-345.417 1050.96,-349.613"/>
179 </g>
180 <!-- dante__overlapping_regions -->
181 <g id="node17" class="node"><title>dante__overlapping_regions</title>
182 <ellipse fill="#fecccc" fill-opacity="0.698039" stroke="black" cx="1705" cy="-178" rx="83.2892" ry="18"/>
183 <text text-anchor="middle" x="1705" y="-174.3" font-family="Times,serif" font-size="14.00" fill="#000000">overlapping_regions</text>
184 </g>
185 <!-- dante&#45;&gt;dante__overlapping_regions -->
186 <g id="edge8" class="edge"><title>dante&#45;&gt;dante__overlapping_regions</title>
187 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M1030.97,-386.325C1069.51,-376.682 1142.47,-358.027 1204,-340 1368.96,-291.674 1562.05,-227.419 1652.83,-196.752"/>
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190 <!-- dante__score_matrix_evaluation -->
191 <g id="node18" class="node"><title>dante__score_matrix_evaluation</title>
192 <ellipse fill="#fecccc" fill-opacity="0.698039" stroke="black" cx="1904" cy="-178" rx="98.212" ry="18"/>
193 <text text-anchor="middle" x="1904" y="-174.3" font-family="Times,serif" font-size="14.00" fill="#000000">score_matrix_evaluation</text>
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195 <!-- dante&#45;&gt;dante__score_matrix_evaluation -->
196 <g id="edge1" class="edge"><title>dante&#45;&gt;dante__score_matrix_evaluation</title>
197 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M1031.84,-387.883C1080.09,-378.91 1182.29,-359.439 1268,-340 1479.34,-292.068 1727.83,-226.455 1841.52,-195.917"/>
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200 <!-- dante__score_table -->
201 <g id="node19" class="node"><title>dante__score_table</title>
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203 <text text-anchor="middle" x="390" y="-174.3" font-family="Times,serif" font-size="14.00" fill="#000000">score_table</text>
204 </g>
205 <!-- dante&#45;&gt;dante__score_table -->
206 <g id="edge17" class="edge"><title>dante&#45;&gt;dante__score_table</title>
207 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M975.478,-388.762C929.132,-381.453 834.914,-364.833 758,-340 632.445,-299.462 491.475,-230.907 426.451,-197.887"/>
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210 <!-- dante__split_fasta -->
211 <g id="node20" class="node"><title>dante__split_fasta</title>
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213 <text text-anchor="middle" x="2067" y="-174.3" font-family="Times,serif" font-size="14.00" fill="#000000">split_fasta</text>
214 </g>
215 <!-- dante&#45;&gt;dante__split_fasta -->
216 <g id="edge10" class="edge"><title>dante&#45;&gt;dante__split_fasta</title>
217 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M1032.64,-389.19C1091.77,-381.191 1231.55,-361.596 1348,-340 1644.48,-285.016 1719.16,-271.857 2011,-196 2014.76,-195.022 2018.66,-193.956 2022.55,-192.85"/>
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220 <!-- dante__write_info -->
221 <g id="node21" class="node"><title>dante__write_info</title>
222 <ellipse fill="#fecccc" fill-opacity="0.698039" stroke="black" cx="2179" cy="-178" rx="47.169" ry="18"/>
223 <text text-anchor="middle" x="2179" y="-174.3" font-family="Times,serif" font-size="14.00" fill="#000000">write_info</text>
224 </g>
225 <!-- dante&#45;&gt;dante__write_info -->
226 <g id="edge14" class="edge"><title>dante&#45;&gt;dante__write_info</title>
227 <path fill="none" stroke="#838b8b" stroke-dasharray="5,2" d="M1033.01,-390.4C1104.17,-383.837 1292.9,-365.305 1449,-340 1605.77,-314.586 1643.71,-301.278 1799,-268 1942.81,-237.181 1979.66,-233.041 2122,-196 2125.83,-195.004 2129.78,-193.926 2133.74,-192.813"/>
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231 <g id="edge24" class="edge"><title>dante__create_gff3&#45;&gt;dante__filter_params</title>
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235 <!-- dante__domain_search&#45;&gt;dante__adjust_gff -->
236 <g id="edge28" class="edge"><title>dante__domain_search&#45;&gt;dante__adjust_gff</title>
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240 <!-- dante__domain_search&#45;&gt;dante__best_score -->
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