Mercurial > repos > petr-novak > dante

comparison dante.xml @ 30:f0663cdbae66 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 29868d121127a8bb509a42fb917b09f669ad4a09-dirty
author petr-novak
date Tue, 05 Nov 2024 15:14:35 +0000
parents a9c81555f2fb
children
comparison
equal deleted inserted replaced
29:8f2bd3cae2de 30:f0663cdbae66
1 <tool id="dante" name="Domain based ANnotation of Transposable Elements - DANTE" version="1.1.8"> 1 <tool id="dante" name="Domain based ANnotation of Transposable Elements - DANTE" version="2.5.1">
2 <description> Tool for annotation of transposable elements based on the similarity to conserved protein domains database. </description> 2 <description> Tool for annotation of transposable elements based on the similarity to conserved protein domains database. </description>
3 <requirements> 3 <requirements>
4 <requirement type="package">dante=0.1.8</requirement> 4 <requirement type="package">dante=0.2.5</requirement>
5 </requirements> 5 </requirements>
6 <stdio> 6 <stdio>
7 <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" /> 7 <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" />
8 <regex match="error" source="stderr" level="fatal" description="Unknown error" /> 8 <regex match="error" source="stderr" level="fatal" description="Unknown error" />
9 </stdio> 9 </stdio>
81 <when value="aln"> 81 <when value="aln">
82 <param name="input_sequences" type="data" format="txt" label="Sequences in ALN format (extracted from RepeatExplorer)"/> 82 <param name="input_sequences" type="data" format="txt" label="Sequences in ALN format (extracted from RepeatExplorer)"/>
83 </when> 83 </when>
84 </conditional> 84 </conditional>
85 <param name="database" type="select" label="Select REXdb database"> 85 <param name="database" type="select" label="Select REXdb database">
86 <option value="Viridiplantae_v4.0" selected="true">Viridiplantae_v4.0</option>
86 <option value="Viridiplantae_v3.0" selected="true">Viridiplantae_v3.0</option> 87 <option value="Viridiplantae_v3.0" selected="true">Viridiplantae_v3.0</option>
87 <option value="Metazoa_v3.1" selected="true">Metazoa_v3.1</option> 88 <option value="Metazoa_v3.1" selected="true">Metazoa_v3.1</option>
88 <option value="Viridiplantae_v2.2" selected="true">Viridiplantae_v2.2</option> 89 <option value="Viridiplantae_v2.2" selected="true">Viridiplantae_v2.2</option>
89 <option value="Metazoa_v3.0" selected="true">Metazoa_v3.1</option> 90 <option value="Metazoa_v3.0" selected="true">Metazoa_v3.0</option>
90 </param> 91 </param>
91 <param name="scoring_matrix" type="select" label="Select scoring matrix"> 92 <param name="scoring_matrix" type="select" label="Select scoring matrix">
92 <option value="BL80" selected="true" >BLOSUM80</option> 93 <option value="BL80" selected="true" >BLOSUM80</option>
93 <option value="BL62">BLOSUM62</option> 94 <option value="BL62">BLOSUM62</option>
94 <option value="MIQS">MIQS</option> 95 <option value="MIQS">MIQS</option>