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comparison dante_gff_to_dna.xml @ 29:8f2bd3cae2de draft default tip

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author petr-novak
date Wed, 21 Jun 2023 08:50:27 +0000
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28:a9c81555f2fb 29:8f2bd3cae2de
3 <requirements> 3 <requirements>
4 <requirement type="package">dante=0.1.8</requirement> 4 <requirement type="package">dante=0.1.8</requirement>
5 </requirements> 5 </requirements>
6 <command> 6 <command>
7 TEMP_DIR_LINEAGES=\$(mktemp -d) &amp;&amp; 7 TEMP_DIR_LINEAGES=\$(mktemp -d) &amp;&amp;
8 /mnt/raid/users/petr/workspace/dante/dante_gff_to_dna.py --domains_gff ${domains_gff} --input_dna ${input_dna} --out_dir \$TEMP_DIR_LINEAGES 8 dante_gff_to_dna.py --domains_gff ${domains_gff} --input_dna ${input_dna} --out_dir \$TEMP_DIR_LINEAGES
9 9
10 #if $extend_edges: 10 #if $extend_edges:
11 --extended True 11 --extended True
12 #else: 12 #else:
13 --extended False 13 --extended False