Mercurial > repos > petr-novak > dante

diff dante.xml @ 3:18d6c1c66798 draft

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Uploaded
author petr-novak
date Wed, 03 Jul 2019 05:09:48 -0400
parents 77d9f2ecb28a
children 6dcecbe81d78
line wrap: on
line diff
--- a/dante.xml	Wed Jul 03 04:53:24 2019 -0400
+++ b/dante.xml	Wed Jul 03 05:09:48 2019 -0400
@@ -3,6 +3,7 @@
   <requirements>
     <requirement type="package">last</requirement>
     <requirement type="package">numpy</requirement>
+    <requirement type="package" version="1.0">rexdb</requirement>
   </requirements>
 <stdio>
   <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" />
@@ -10,7 +11,7 @@
 </stdio>
 <command>
 python3 ${__tool_directory__}/dante.py --query ${input} --domain_gff ${DomGff}
-	--protein_database ${__tool_directory__ }/tool-data/protein_domains/${db_type}_pdb
+	--protein_database \${REXDB}/${db_type}_pdb
 	--classification ${__tool_directory__ }/tool-data/protein_domains/${db_type}_class
 </command>
 <inputs>