--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tests.sh	Wed Jul 03 02:45:00 2019 -0400
@@ -0,0 +1,25 @@
+#!/bin/bash
+
+export DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
+export test_data="$DIR/test_data"
+export classification_tbl=${DIR}/tool-data/protein_domains/Viridiplantae_v3.0_class
+export pdb=${DIR}/tool-data/protein_domains/Viridiplantae_v3.0_pdb
+
+# make sure  dir for testing exists
+mkdir -p $DIR/tmp
+
+######## DANTE
+## single_seq, for/rev strand of mapping
+$DIR/dante.py -q $test_data/GEPY_test_long_1 -pdb $pdb -cs $classification_tbl \
+              --domain_gff $PWD/tmp/single_fasta.gff3
+## multifasta
+$DIR/dante.py -q $test_data/vyber-Ty1_01.fasta -pdb $pdb -cs $classification_tbl \
+              --domain_gff $PWD/tmp/multifasta.gff3
+## multifasta_win
+$DIR/dante.py -q $test_data/vyber-Ty1_01.fasta -pdb $pdb -cs $classification_tbl \
+              -wd 3100 -od 1500 --domain_gff $PWD/tmp/multifasta_win.gff3
+
+# test filtering
+$DIR/dante_gff_output_filtering.py --dom_gff $PWD/tmp/single_fasta.gff3 \
+                                   --domains_filtered $PWD/tmp/single_fasta_filtered.gff3 \
+