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diff dom_prot_seq.fa @ 9:ed4d9ede9cb4 draft

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author petr-novak
date Wed, 03 Jul 2019 09:21:52 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/dom_prot_seq.fa	Wed Jul 03 09:21:52 2019 -0400
@@ -0,0 +1,57 @@
+>scaffold146.1|size86774:976-1289 RH Class_I|LTR|Ty1/copia|Bianca
+ISWRSTKQTIVAISSNHVELLAIHDTSRECVWLRFMIESIIMXXXXXXXXXXXXXXXXXX
+QLKE*YIKCDRTKHISPKFFFTQDLQKNGDVIIQQIRSNDNVVD
+>scaffold146.1|size86774:6810-7049 PROT Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand
+LVDSGASCNLMSKRVMKQMGIPDEKLEFLDATLYAFDRRTIIPAGKIQLPVTLGEEERTR
+SEMVEFIIVDMDLAYNAILG
+>scaffold146.1|size86774:8801-9241 RT Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat
+DFKGVNKHCQPDPFPLPHIDRLVDAVAGSSLLSTMDAYSGYHQISLAREDQAKSSFLTED
+GVFCYVVMPFGLRNAGATYQRLVNKIFADLLGKEMEIYVDDMIVKSLNDEDHIIYLSHCF
+EVCRTHRLKLNPAKCCFGVRSGKFLGY
+>scaffold146.1|size86774:10819-11667 INT Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand
+RDAMDCVRRCQSCQYFAPINRKPGAEITLTELPCPFDRWGIDILGPFPQSVRQRRFCIVA
+VEYHSKWIEAEAVASITSEAVKKFVMNNIIVRFGCPRVLVSDNGPQFISDKFATFCEEYG
+IQQRTSSVYHPQTNGQAEASNKIILHGLRRNLDSLGGSWPDQLPHVLWAYRTTPKSSTGE
+TPFSLVYGSEAVAPVESTIITPRIAAYMHTESANTEFRELDLDLLEERRNEVYGRVRKQQ
+RALRKRYNQRVRPRQFEKGDLILRSVESQGHKGKLDRAWEGPY
+>scaffold146.1|size86774:14592-14828 PROT Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila
+MVDLGASINLMPYSIYSALQLGPLQGTAIVIKLADRSNTHPEGVIEDVLVQVNNLVFPAD
+FYVLKMGKAENNDCPLLLG
+>scaffold146.1|size86774:15420-15995 RT Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila
+IYAISDSDWVSPVHVVPKKTGFTVERNKNGELVPKRVTNGWRVCIDYRKLNDATRKDHFP
+LPFIDQMLERLAGKKFYCFLDGYSGYNQVAIAPEDQEKTTFTCTYGTYAFRKMPFGLCNA
+PATFQRCMLSIFSEFTGKFIEVFMDDFTVYGDSFEGALENLEKVLQRCVEKKLVLNSEKC
+HFMVRQGIVLGH
+>scaffold146.1|size86774:16188-16634 RH Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila
+FNQECQEAFNKLKSLLTAAPIIQPPNWELPFELMCDASNYALGAVLGQKIEGKRHVIYYA
+SKTLSEAQIHYTTTEKELLAIVYALEKFRSYLLGTKITVHSDHAALRHLLSKKESKPRLI
+RWILLLQEFDLEIKDRAGTENAVADNLSR
+>scaffold146.1|size86774:24873-25481 INT Class_I|LTR|Ty1/copia|Bianca
+HDRLGHPGMIMMRKIIRTTSGHSLKNREILHPREYICTACAQGKLITRPSPVKIMNERIT
+FLERIQGDICGPIHPACGPFRYFIVLIDASSRWSHVSLLSTRNHAFARLLSQIIRLRAHF
+PDYPVKKIRLDNAAEFTSRTFNNYCLAMGIDVEHPVEYVHTQNGLAESLIKRLQLIARPL
+LMKSKLPVTCWGHAIIHASSLIR
+>scaffold146.1|size86774:26322-27032 RT Class_I|LTR|Ty1/copia|Bianca
+WKDAIESELKSLNKRDVFGPVVRTPEGVQPVGYKWVFVRKRNDKGEISRYKARLVAQGFS
+QRPGIDYDETYSPVMDATTFRFLISLAIEYGLDLQLMDVVTAYLYGSLDCEIYMKIPEGF
+HMPERYSSEPRTDYAIKLNKSLYGLKQSGRMWYNRLSEYLIKEGYKNNLVCPCVFMKKFE
+NEFVIIAVYVDDINIVGTQKALLDAVNCLKREFEMKDLGRTKYCLGLQIEYLKNGIF
+>scaffold146.1|size86774:27723-28124 RH Class_I|LTR|Ty1/copia|Bianca
+DAGYRSDPHNGRSQTGYVFLNKGAAISWRSTKQTIAATSSNHAELLAIHETSRECVWLRS
+MIESIYNACGLFTDKMPPTVLYEDNSACIIQLKEGYIKGDRTKHISPKFFFTHDLQKNGE
+VIIQQIRSSDNVAD
+>scaffold146.1|size86774:10299-10658 aRH Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat
+WNMYIDGSTQSGAGVGVHYITPYGDWINLAVKLQFPATNNVAEYEALLAGMNFALSLGVT
+RLKTFSDSQLVVEQFSGHFQAKEPMLEAYKSRSQLLAAKFSEFSLEHIPRESNRAADSLA
+>scaffold146.1|size86774:16812-17666 INT Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila
+HASDYGGHFGPNRTARRILDVGFYWPSIFRDVYQFCRTCDACQRVGNITNRREMPQNYIL
+ANEIFDIWGLDFMGPFPQSQGNNYILVAVDYVSKWVEAIPTRTDDGKTVTEFLRKNIFTR
+YGVPKAIISDRGTHFCNSTMRAMMKKYNVIHKTTTAYHPQGNGQAEATNREIKSILEKVV
+NKKRSNWSQKLPDALWAYRTAYKTPIGTTPFRLIYGKHCNLPVGLEHKAYWAIREMNFEE
+GGDAELRQMQLQELDALRLEAYDNSRIYKERLKTYHDKKLLQQNF
+>scaffold146.1|size86774:19976-20212 PROT Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila
+MVDLGASINLMPYYIYSALKLGSLQGTAIIIKLADRSETHPEGVVKDVLAQVNNLVFPAD
+FYVLKMGEAENDDCPLLLG
+>scaffold146.1|size86774:28912-29124 PROT Class_I|LTR|Ty1/copia|Bianca
+CLVDSATTHTILKNMRYFTSFEKRDVNIATIVCEANIVEGSGRAVIVLPSGTHIRIDDAL
+YANKSRRNLLS