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author petr-novak
date Wed, 14 Aug 2019 11:24:15 -0400
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<tool id="gff_summary" name="Summarize gff3 output from DANTE" version="0.1.0" python_template_version="3.5">
    <requirements>
        <requirement type="package">R</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        summarize_gff.R '$inputgff' '$output'
    ]]></command>
    <inputs>
      <param type="data" name="inputgff" format="gff3" />
      <param name="group" type="select" label="select categories to summarize" multiple="true">
            <option value="Name">Numerical sort</option>
            <option value="Final_Classification">General numeric sort</option>
            <option value="seqid">Alphabetical sort</option>
      </param>
    </inputs>
    <outputs>
        <data name="output" format="csv" />
    </outputs>
    <help><![CDATA[
        TODO: Fill in help.
    ]]></help>
</tool>