# HG changeset patch # User petr-novak # Date 1562160112 14400 # Node ID ed4d9ede9cb46d36b5748433e96ead837520af03 # Parent cc10173bd0c5a86e78bc1dad454823d4a4e6945e Uploaded diff -r cc10173bd0c5 -r ed4d9ede9cb4 configuration.py --- a/configuration.py Wed Jul 03 08:10:33 2019 -0400 +++ b/configuration.py Wed Jul 03 09:21:52 2019 -0400 @@ -2,118 +2,6 @@ ''' configuration file to set up the paths and constants ''' import os -######## PROFREP ####################################################### -## Constansts -N_segment = 50 -MAX_FILES_SUBPROFILES = 1000 -MAX_PIC_NUM = 50 -IMAGE_RES = 300 -FASTA_LINE = 60 -SEQ_LEN_VIZ = 200000 -FORBIDDEN_CHARS = "\\/" -HTML_STR = ''' - - - -

PROFREP OUTPUT

-

Sequences processed:

- {} -

Total length:

- 
 {} bp
-

Database:

- 
 {}
-
-

Repetitive profile(s)


- {}
-

References:

- {} - - - - ''' - -## IO -DOMAINS_GFF = "output_domains.gff" -N_GFF = "N_regions.gff" -REPEATS_GFF = "output_repeats.gff" -HTML = "output.html" -LOG_FILE = "log.txt" -PROFREP_DATA = "tool_data/profrep" -PROFREP_TBL = "prepared_datasets.txt" -PROFREP_OUTPUT_DIR = "profrep_output_dir" -## JBrowse and Tracks Conf -jbrowse_data_dir = "data" -JSON_CONF_R = """{"hooks" : {"modify": "function( track, f, fdiv ) {fdiv.style.backgroundColor = '#278ECF'}"}}""" -JSON_CONF_N = """{"hooks" : {"modify": "function( track, f, fdiv ) {fdiv.style.background = '#474747'}"}}""" -COLORS_HEX = ["#7F7F7F", "#00FF00", "#0000FF", "#FF0000", "#01FFFE", "#FFA6FE", - "#FFDB66", "#006401", "#010067", "#95003A", "#007DB5", "#FF00F6", - "#774D00", "#90FB92", "#0076FF", "#D5FF00", "#FF937E", "#6A826C", - "#FF029D", "#FE8900", "#7A4782", "#7E2DD2", "#85A900", "#FF0056", - "#A42400", "#00AE7E", "#683D3B", "#BDC6FF", "#263400", "#BDD393", - "#00B917", "#9E008E", "#001544", "#C28C9F", "#FF74A3", "#01D0FF", - "#004754", "#E56FFE", "#788231", "#0E4CA1", "#91D0CB", "#BE9970", - "#968AE8", "#BB8800", "#43002C", "#DEFF74", "#00FFC6", "#FFE502", - "#620E00", "#008F9C", "#98FF52", "#7544B1", "#B500FF", "#00FF78", - "#FF6E41", "#005F39", "#6B6882", "#5FAD4E", "#A75740", "#A5FFD2", - "#FFB167", "#009BFF", "#E85EBE"] -COLORS_RGB = ["127,127,127", "0,255,0", "0,0,255", "255,0,0", "1,255,254", - "255,166,254", "255,219,102", "0,100,1", "1,0,103", "149,0,58", - "0,125,181", "255,0,246", "119,77,0", "144,251,146", "0,118,255", - "213,255,0", "255,147,126", "106,130,108", "255,2,157", - "254,137,0", "122,71,130", "126,45,210", "133,169,0", "255,0,86", - "164,36,0", "0,174,126", "104,61,59", "189,198,255", "38,52,0", - "189,211,147", "0,185,23", "158,0,142", "0,21,68", "194,140,159", - "255,116,163", "1,208,255", "0,71,84", "229,111,254", - "120,130,49", "14,76,161", "145,208,203", "190,153,112", - "150,138,232", "187,136,0", "67,0,44", "222,255,116", - "0,255,198", "255,229,2", "98,14,0", "0,143,156", "152,255,82", - "117,68,177", "181,0,255", "0,255,120", "255,110,65", "0,95,57", - "107,104,130", "95,173,78", "167,87,64", "165,255,210", - "255,177,103", "0,155,255", "232,94,190"] -TRACK_LIST = ''' - \t,{}\n - \t"storeClass" : "JBrowse/Store/SeqFeature/BigWig", - \t"urlTemplate" : "{}", - \t"type" : "JBrowse/View/Track/Wiggle/XYPlot", - \t"label" : "{}", - \t"key" : "{}", - \t"style": {} - \t\t"pos_color": "{}" - \t {}, - \t"scale" : "log" - \t{}\n - ''' - -## GFF tracks -HEADER_GFF = "##gff-version 3" -SOURCE_PROFREP = "profrep" -SOURCE_DANTE = "dante" -PHASE = "." -DOMAINS_FEATURE = "protein_domain" -REPEATS_FEATURE = "repeat" -N_NAME = "N" -N_FEATURE = "N_region" -HEADER_WIG = "variableStep\tchrom=" -GFF_EMPTY = "." - -######### BIG WIG ###################################################### -CHROM_SIZES_FILE = "chrom_sizes.txt" - -######### EXTRACT_DATA_DOR_PROFREP ##################################### -HITSORT_CLS = "seqclust/clustering/hitsort.cls" -READS_ALL = "seqclust/sequences/sequences.fasta" -ANNOTATION = "PROFREP_CLASSIFICATION_TEMPLATE.csv" - -######### PROFREP_DB_REDUCING ########################################## -MEM_LIM = 1500 # MB -CLS_REDUCED = "hitsort_reduced.cls" -READS_ALL_REDUCED = "reads_all_reduced" - -######### PROFREP_REFINING ############################################# -WITH_DOMAINS = "mobile_element" -QUALITY_DIFF_TO_REMOVE = 0.05 # 5% tolerance of PID - -######### DANTE ############################################## MAIN_GIT_DIR = os.path.dirname(os.path.realpath(__file__)) TOOL_DATA = os.path.join(MAIN_GIT_DIR, "tool-data") TMP = "tmp" @@ -126,3 +14,10 @@ FILT_DOM_GFF = "domains_filtered.gff" EXTRACT_DOM_STAT = "domains_counts.txt" EXTRACT_OUT_DIR = "extracted_domains" +FASTA_LINE = 60 +SOURCE_PROFREP = "profrep" +SOURCE_DANTE = "dante" +DOMAINS_FEATURE = "protein_domain" +PHASE = "." +HEADER_GFF = "##gff-version 3" +DOMAINS_GFF = "output_domains.gff" diff -r cc10173bd0c5 -r ed4d9ede9cb4 dante_gff_to_dna.xml --- a/dante_gff_to_dna.xml Wed Jul 03 08:10:33 2019 -0400 +++ b/dante_gff_to_dna.xml Wed Jul 03 09:21:52 2019 -0400 @@ -1,5 +1,8 @@ Tool to extract nucleotide sequences of protein domains found by DANTE + + biopython + TEMP_DIR_LINEAGES=\$(mktemp -d) && python3 ${__tool_directory__}/dante_gff_to_dna.py --domains_gff ${domains_gff} --input_dna ${input_dna} --out_dir \$TEMP_DIR_LINEAGES diff -r cc10173bd0c5 -r ed4d9ede9cb4 dom_prot_seq.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/dom_prot_seq.fa Wed Jul 03 09:21:52 2019 -0400 @@ -0,0 +1,57 @@ +>scaffold146.1|size86774:976-1289 RH Class_I|LTR|Ty1/copia|Bianca +ISWRSTKQTIVAISSNHVELLAIHDTSRECVWLRFMIESIIMXXXXXXXXXXXXXXXXXX +QLKE*YIKCDRTKHISPKFFFTQDLQKNGDVIIQQIRSNDNVVD +>scaffold146.1|size86774:6810-7049 PROT Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand +LVDSGASCNLMSKRVMKQMGIPDEKLEFLDATLYAFDRRTIIPAGKIQLPVTLGEEERTR +SEMVEFIIVDMDLAYNAILG +>scaffold146.1|size86774:8801-9241 RT Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat +DFKGVNKHCQPDPFPLPHIDRLVDAVAGSSLLSTMDAYSGYHQISLAREDQAKSSFLTED +GVFCYVVMPFGLRNAGATYQRLVNKIFADLLGKEMEIYVDDMIVKSLNDEDHIIYLSHCF +EVCRTHRLKLNPAKCCFGVRSGKFLGY +>scaffold146.1|size86774:10819-11667 INT Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand +RDAMDCVRRCQSCQYFAPINRKPGAEITLTELPCPFDRWGIDILGPFPQSVRQRRFCIVA +VEYHSKWIEAEAVASITSEAVKKFVMNNIIVRFGCPRVLVSDNGPQFISDKFATFCEEYG +IQQRTSSVYHPQTNGQAEASNKIILHGLRRNLDSLGGSWPDQLPHVLWAYRTTPKSSTGE +TPFSLVYGSEAVAPVESTIITPRIAAYMHTESANTEFRELDLDLLEERRNEVYGRVRKQQ +RALRKRYNQRVRPRQFEKGDLILRSVESQGHKGKLDRAWEGPY +>scaffold146.1|size86774:14592-14828 PROT Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila +MVDLGASINLMPYSIYSALQLGPLQGTAIVIKLADRSNTHPEGVIEDVLVQVNNLVFPAD +FYVLKMGKAENNDCPLLLG +>scaffold146.1|size86774:15420-15995 RT Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila +IYAISDSDWVSPVHVVPKKTGFTVERNKNGELVPKRVTNGWRVCIDYRKLNDATRKDHFP +LPFIDQMLERLAGKKFYCFLDGYSGYNQVAIAPEDQEKTTFTCTYGTYAFRKMPFGLCNA +PATFQRCMLSIFSEFTGKFIEVFMDDFTVYGDSFEGALENLEKVLQRCVEKKLVLNSEKC +HFMVRQGIVLGH +>scaffold146.1|size86774:16188-16634 RH Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila +FNQECQEAFNKLKSLLTAAPIIQPPNWELPFELMCDASNYALGAVLGQKIEGKRHVIYYA +SKTLSEAQIHYTTTEKELLAIVYALEKFRSYLLGTKITVHSDHAALRHLLSKKESKPRLI +RWILLLQEFDLEIKDRAGTENAVADNLSR +>scaffold146.1|size86774:24873-25481 INT Class_I|LTR|Ty1/copia|Bianca +HDRLGHPGMIMMRKIIRTTSGHSLKNREILHPREYICTACAQGKLITRPSPVKIMNERIT +FLERIQGDICGPIHPACGPFRYFIVLIDASSRWSHVSLLSTRNHAFARLLSQIIRLRAHF +PDYPVKKIRLDNAAEFTSRTFNNYCLAMGIDVEHPVEYVHTQNGLAESLIKRLQLIARPL +LMKSKLPVTCWGHAIIHASSLIR +>scaffold146.1|size86774:26322-27032 RT Class_I|LTR|Ty1/copia|Bianca +WKDAIESELKSLNKRDVFGPVVRTPEGVQPVGYKWVFVRKRNDKGEISRYKARLVAQGFS +QRPGIDYDETYSPVMDATTFRFLISLAIEYGLDLQLMDVVTAYLYGSLDCEIYMKIPEGF +HMPERYSSEPRTDYAIKLNKSLYGLKQSGRMWYNRLSEYLIKEGYKNNLVCPCVFMKKFE +NEFVIIAVYVDDINIVGTQKALLDAVNCLKREFEMKDLGRTKYCLGLQIEYLKNGIF +>scaffold146.1|size86774:27723-28124 RH Class_I|LTR|Ty1/copia|Bianca +DAGYRSDPHNGRSQTGYVFLNKGAAISWRSTKQTIAATSSNHAELLAIHETSRECVWLRS +MIESIYNACGLFTDKMPPTVLYEDNSACIIQLKEGYIKGDRTKHISPKFFFTHDLQKNGE +VIIQQIRSSDNVAD +>scaffold146.1|size86774:10299-10658 aRH Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat +WNMYIDGSTQSGAGVGVHYITPYGDWINLAVKLQFPATNNVAEYEALLAGMNFALSLGVT +RLKTFSDSQLVVEQFSGHFQAKEPMLEAYKSRSQLLAAKFSEFSLEHIPRESNRAADSLA +>scaffold146.1|size86774:16812-17666 INT Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila +HASDYGGHFGPNRTARRILDVGFYWPSIFRDVYQFCRTCDACQRVGNITNRREMPQNYIL +ANEIFDIWGLDFMGPFPQSQGNNYILVAVDYVSKWVEAIPTRTDDGKTVTEFLRKNIFTR +YGVPKAIISDRGTHFCNSTMRAMMKKYNVIHKTTTAYHPQGNGQAEATNREIKSILEKVV +NKKRSNWSQKLPDALWAYRTAYKTPIGTTPFRLIYGKHCNLPVGLEHKAYWAIREMNFEE +GGDAELRQMQLQELDALRLEAYDNSRIYKERLKTYHDKKLLQQNF +>scaffold146.1|size86774:19976-20212 PROT Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila +MVDLGASINLMPYYIYSALKLGSLQGTAIIIKLADRSETHPEGVVKDVLAQVNNLVFPAD +FYVLKMGEAENDDCPLLLG +>scaffold146.1|size86774:28912-29124 PROT Class_I|LTR|Ty1/copia|Bianca +CLVDSATTHTILKNMRYFTSFEKRDVNIATIVCEANIVEGSGRAVIVLPSGTHIRIDDAL +YANKSRRNLLS diff -r cc10173bd0c5 -r ed4d9ede9cb4 tests.sh --- a/tests.sh Wed Jul 03 08:10:33 2019 -0400 +++ b/tests.sh Wed Jul 03 09:21:52 2019 -0400 @@ -1,7 +1,7 @@ #!/bin/bash export DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )" -export test_data="$DIR/test_data" +export TEXT_DATA="$DIR/test-data" export classification_tbl=${DIR}/tool-data/protein_domains/Viridiplantae_v3.0_class export pdb=${DIR}/tool-data/protein_domains/Viridiplantae_v3.0_pdb @@ -10,13 +10,13 @@ ######## DANTE ## single_seq, for/rev strand of mapping -$DIR/dante.py -q $test_data/GEPY_test_long_1 -pdb $pdb -cs $classification_tbl \ +$DIR/dante.py -q ${TEXT_DATA}/GEPY_test_long_1 -pdb $pdb -cs $classification_tbl \ --domain_gff $PWD/tmp/single_fasta.gff3 ## multifasta -$DIR/dante.py -q $test_data/vyber-Ty1_01.fasta -pdb $pdb -cs $classification_tbl \ +$DIR/dante.py -q ${TEXT_DATA}/vyber-Ty1_01.fasta -pdb $pdb -cs $classification_tbl \ --domain_gff $PWD/tmp/multifasta.gff3 ## multifasta_win -$DIR/dante.py -q $test_data/vyber-Ty1_01.fasta -pdb $pdb -cs $classification_tbl \ +$DIR/dante.py -q ${TEXT_DATA}/vyber-Ty1_01.fasta -pdb $pdb -cs $classification_tbl \ -wd 3100 -od 1500 --domain_gff $PWD/tmp/multifasta_win.gff3 # test filtering diff -r cc10173bd0c5 -r ed4d9ede9cb4 tmp/multifasta.gff3 --- a/tmp/multifasta.gff3 Wed Jul 03 08:10:33 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,58 +0,0 @@ -##gff-version 3 -##----------------------------------------------- -##PIPELINE VERSION : dante-rv-3081(adb2509) -##PROTEIN DATABASE VERSION : Viridiplantae_v3.0_pdb -##----------------------------------------------- -Acoerulea195_58_rc dante protein_domain 1753 1956 368 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|SIRE;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|SIRE;Best_Hit=Ty1-PROT__REXdb_ID3879|Class_I|LTR|Ty1/copia|SIRE:1753-1956[100percent];Best_Hit_DB_Pos=1:68of68;DB_Seq=WLLDSGASKHMSGNAKLFSSVTAIDGGSVTFGNGKSSPVIGKGFVAGIGLSPNDVCLLVDGLRVNLIS;Query_Seq=WLLDSGASKHMSGNAKLFSSVTAIDGGSVTFGNGKSSPVIGKGFVAGIGLSPNDVCLLVDGLRVNLIS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Acoerulea195_58_rc dante protein_domain 2140 2742 1162 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|SIRE;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|SIRE;Best_Hit=Ty1-INT__REXdb_ID3979|Class_I|LTR|Ty1/copia|SIRE:2140-2742[100percent];Best_Hit_DB_Pos=1:201of201;DB_Seq=HQRLGHVNFEHLDNLTRNEYIKGVPRLGRNRDTVCGGCQLGKQIRSPHSKKKSITTSSPLELIHMDLMGPTRTPSLGGKRYILVMVDDYTRFTWVSFLREKSDAFLEFQGICLRIQNEKDTQIKHIRSDRGGEFTATGVIEYCIANGTWQEFSAPYTPQQNGVAERKNRVIQEMARAMLHAKDVPTKFWAEVVHTACYIMN;Query_Seq=HQRLGHVNFEHLDNLTRNEYIKGVPRLGRNRDTVCGGCQLGKQIRSPHSKKKSITTSSPLELIHMDLMGPTRTPSLGGKRYILVMVDDYTRFTWVSFLREKSDAFLEFQGICLRIQNEKDTQIKHIRSDRGGEFTATGVIEYCIANGTWQEFSAPYTPQQNGVAERKNRVIQEMARAMLHAKDVPTKFWAEVVHTACYIMN;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Acoerulea195_58_rc dante protein_domain 2815 2958 128 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|SIRE;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|SIRE;Best_Hit=Ty1-RT__REXdb_ID4340|Class_I|LTR|Ty1/copia|SIRE:2815-2958[100percent];Best_Hit_DB_Pos=1:48of256;DB_Seq=HFHIFGIPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTR;Query_Seq=YMRVFGSVCYVCKDRQSLSKFDSRGEVALLLGYSSNSRAFRVFNYTTR;Identity=0.46;Similarity=0.65;Relat_Length=0.188;Relat_Interruptions=0.0;Hit_to_DB_Length=0.19 -Acoerulea195_58_rc dante protein_domain 3268 4199 1404 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|SIRE;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|SIRE;Best_Hit=Ty1-RT__REXdb_ID3881|Class_I|LTR|Ty1/copia|SIRE:3433-4199[82percent];Best_Hit_DB_Pos=1:256of256;DB_Seq=WLVAMQEELGQFKRSDVWTLVPRPTHTNVVGTKWIFKNKLDEFGQIVRNKARLVAQGYSQIEGIDYGETFAPVARLESVRLLLAMACHLNFKLYQMDVKSAFLNGILNEEVYVEQPKGFVDHT-FPNHVFKLQKALYGLKQAPRAWYERLTSFLLGKGFVRGSVDRTLFILRKNTDVLLAQVYVDDIVFGSTCPSLSESFSQLMSSEFEMSLMGELNFFLGLQVKQFDHGAFISQTKYAKELVKKFGLSTSSGQDTP;Query_Seq=WLVAMQEELGQFKRSDVWTLVPRPTHTNVVGTKWIFKNKLDEFGQIVRNKARLVAQGYSQIEGIDYGETFAPVARLESVRLLLAMACHLNFKLYQMDVKSAFLNGILNEEVYVEQPKGFVDHT/FPNHVFKLQKALYGLKQAPRAWYERLTSFLLGKGFVRGSVDRTLFILRKNTDVLLAQVYVDDIVFGSTCPSLSESFSQLMSSEFEMSLMGELNFFLGLQVKQFDHGAFISQTKYAKELVKKFGLSTSSGQDTP;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0 -Acoerulea195_58_rc dante protein_domain 4260 4346 90 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RH__REXdb_ID3204|Class_I|LTR|Ty1/copia|Ivana:4260-4346[100percent];Best_Hit_DB_Pos=12:40of134;DB_Seq=YRSLIGCLMYLTATRPDIMHAVSLLSKKQ;Query_Seq=YRSMIGSLLYLTASRPDISYSVGVCARFQ;Identity=0.55;Similarity=0.83;Relat_Length=0.216;Relat_Interruptions=0.0;Hit_to_DB_Length=0.22 -Acoerulea195_58_rc dante protein_domain 4467 4844 733 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|SIRE;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|SIRE;Best_Hit=Ty1-RH__REXdb_ID3879|Class_I|LTR|Ty1/copia|SIRE:4467-4844[100percent];Best_Hit_DB_Pos=1:126of126;DB_Seq=DADWGGNLDDRHSTSGGCFYVGNNLVSWHSKKQSSVSISSCEAEYIAAASACTQLLWMRQMLRDYGIQQQAMDLFCDNTSTISISKNPVQHSRTKHIDIRHHFLREAVEKGDIVMEFIPTEHQLAD;Query_Seq=DADWGGNLDDRHSTSGGCFYVGNNLVSWHSKKQSSVSISSCEAEYIAAASACTQLLWMRQMLRDYGIQQQAMDLFCDNTSTISISKNPVQHSRTKHIDIRHHFLREAVEKGDIVMEFIPTEHQLAD;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Egrandis201_33_rc dante protein_domain 1161 1367 391 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-PROT__REXdb_ID324|Class_I|LTR|Ty1/copia|Ale:1161-1367[100percent];Best_Hit_DB_Pos=1:69of69;DB_Seq=WIIDTGASDHIVCNQFFFSNIEKLPFPISIQLPNGNTTHVGMTGTVNLSPLITLNNVLYVPSFQFNLIS;Query_Seq=WIIDTGASDHIVCNQFFFSNIEKLPFPISIQLPNGNTTHVGMTGTVNLSPLITLNNVLYVPSFQFNLIS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Egrandis201_33_rc dante protein_domain 1572 2195 1035 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-INT__REXdb_ID324|Class_I|LTR|Ty1/copia|Ale:1584-2123[86percent];Best_Hit_DB_Pos=1:180of180;DB_Seq=HQRLGHTTSFPYPQCHICPLVKQTCAPFQTSNTRLDSIFSLVHVDVWGPYHTLNHDGSWFFLTIVDDLSRATWVFLIQSKNQVLSHLRIFLSLSKTxFGKSICRIRTDNGKELFSGECASFFSSNGILHESTCTYTPQQNEVVERKHRHLLELAWALKFQASIPENFWGDCVVTAVYLIN;Query_Seq=HQRLGHTTSFPYPQCHICPLVKQTCAPFQTSNTRLDSIFSLVHVDVWGPYHTLNHDGSWFFLTIVDDLSRATWVFLIQSKNQVLSHLRIFLSLSKT*FGKSICRIRTDNGKELFSGECASFFSSNGILHESTCTYTPQQNEVVERKHRHLLELAWALKFQASIPENFWGDCVVTAVYLIN;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=0.5;Hit_to_DB_Length=1.0 -Egrandis201_33_rc dante protein_domain 2856 3620 1393 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RT__REXdb_ID324|Class_I|LTR|Ty1/copia|Ale:2856-3619[99percent];Best_Hit_DB_Pos=1:255of255;DB_Seq=WQRAMEVELKALIDNHIWDIVSLPPHRKPIGCKWVYKIN-HKVDGSVERYKARLVAKGFTxRExFDYHETFSSVAKDVTVCSFLSVAAFRNWSMHQMDIHNAFLHGDLEEEIYMDLPQGLRRQGESKVCRLRKSLYGLKxASRQWYTKFTNALTGAGFKQSKHDYALFTWTKVTSSIYLMIYVDDILIMGNDDSVVRKLKEYLHSSFHIKDLGSPKYFLGIEITRSDQGISLSQRKFVMEIISEAGLSGCKLAVIP;Query_Seq=WQRAMEVELKALIDNHIWDIVSLPPHRKPIGCKWVYKIN/YKVDGSVERYKARLVAKGFT*RE*FDYHETFSSVAKDVTVCSFLSVAAFRNWSMHQMDIHNAFLHGDLEEEIYMDLPQGLRRQGESKVCRLRKSLYGLK*ASRQWYTKFTNALTGAGFKQSKHDYALFTWTKVTSSIYLMIYVDDILIMGNDDSVVRKLKEYLHSSFHIKDLGSPKYFLGIEITRSDQGISLSQRKFVMEIISEAGLSGCKLAVIP;Identity=0.98;Similarity=0.98;Relat_Length=1.0;Relat_Interruptions=1.33;Hit_to_DB_Length=1.0 -Egrandis201_33_rc dante protein_domain 3914 4294 717 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RH__REXdb_ID324|Class_I|LTR|Ty1/copia|Ale:3914-4294[100percent];Best_Hit_DB_Pos=1:127of127;DB_Seq=DLDYATCPMSRRSIIGFCIKFGESLLSWKTKKQSTVSLSSAEAKYRSMAKTVCEVVWLRGLLQDLGIQVRGPTLLFCDNDSAIKLAANPILHERTKHIEVDCHFTREKIKEGIIKTRGIRTTEQPAD;Query_Seq=DLDYATCPMSRRSIIGFCIKFGESLLSWKTKKQSTVSLSSAEAKYRSMAKTVCEVVWLRGLLQDLGIQVRGPTLLFCDNDSAIKLAANPILHERTKHIEVDCHFTREKIKEGIIKTRGIRTTEQPAD;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Gmax275_361_rc dante protein_domain 560 829 471 + . Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Tork;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Tork;Best_Hit=Ty1-GAG__REXdb_ID5204|Class_I|LTR|Ty1/copia|Tork:560-829[100percent];Best_Hit_DB_Pos=1:90of90;DB_Seq=IRLTLAKSVVFNIVNEKTTAGLMKALSDMYKKPSAANKVYLMRRLFNLKMGEGISVTDHINEFNTILAQLESVQIKFEDEVKALILLSSL;Query_Seq=IRLTLAKSVVFNIVNEKTTAGLMKALSDMYKKPSAANKVYLMRRLFNLKMGEGISVTDHINEFNTILAQLESVQIKFEDEVKALILLSSL;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Gmax275_361_rc dante protein_domain 1250 1465 402 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Tork;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Tork;Best_Hit=Ty1-PROT__REXdb_ID5202|Class_I|LTR|Ty1/copia|Tork:1250-1465[100percent];Best_Hit_DB_Pos=1:72of72;DB_Seq=WIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINIKTSSGSLWTLHNVRHIPALKRNLIS;Query_Seq=WIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINIKTSSGSLWTLHNVRHIPALKRNLIS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Gmax275_361_rc dante protein_domain 1637 2230 1123 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Tork;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Tork;Best_Hit=Ty1-INT__REXdb_ID5204|Class_I|LTR|Ty1/copia|Tork:1637-2230[100percent];Best_Hit_DB_Pos=1:198of198;DB_Seq=HQRLGHMSEKGMKLMAAKGKLSSLKHVDVGACEHCILGKQKKVSFSRAGKTLKAEKLELVHTDVWGPAPVESVGNSHYYVTFIDDSTRKVWVYFLKNKSDVFSVFKRWKTKVENQTGLKVKNLKSDNGGEYDSQEFKDFCSEHGIRMIKTIPGTPEQNGVAERMNRTLNERARCMRIQSGLPKAFWAEAINTAAYLIN;Query_Seq=HQRLGHMSEKGMKLMAAKGKLSSLKHVDVGACEHCILGKQKKVSFSRAGKTLKAEKLELVHTDVWGPAPVESVGNSHYYVTFIDDSTRKVWVYFLKNKSDVFSVFKRWKTKVENQTGLKVKNLKSDNGGEYDSQEFKDFCSEHGIRMIKTIPGTPEQNGVAERMNRTLNERARCMRIQSGLPKAFWAEAINTAAYLIN;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Gmax275_361_rc dante protein_domain 2777 3549 1427 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Tork;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Tork;Best_Hit=Ty1-RT__REXdb_ID5204|Class_I|LTR|Ty1/copia|Tork:2777-3549[100percent];Best_Hit_DB_Pos=1:258of258;DB_Seq=WELAMKDEMTSLQKNKTW-WSLTEFPEGKKALQNRWVYRLKEESDGRRRYKARLVVKGFQQKQGIDFTEIFSPVVKMTTIRVILSIVAAENLHLEQLDVKTAFLHGDLEEDIYMTQPEGFEVPGKENLVCKLHKSLYGLKQAPRQWYKKFNEFMSNSGFKRCDMDHCCYVKKYTNSYVILVVYVDDMLIAGSSMAEINRLKLQLAENFEMKDLGPAKQILGMRILRNRSEGILKLSQEKYIHKLLDRFYLGDSKTRNTP;Query_Seq=WELAMKDEMTSLQKNKTC/WSLTEFPEGKKALQNRWVYRLKEESDGRRRYKARLVVKGFQQKQGIDFTEIFSPVVKMTTIRVILSIVAAENLHLEQLDVKTAFLHGDLEEDIYMTQPEGFEVPGKENLVCKLHKSLYGLKQAPRQWYKKFNEFMSNSGFKRCDMDHCCYVKKYTNSYVILVVYVDDMLIAGSSMAEINRLKLQLAENFEMKDLGPAKQILGMRILRNRSEGILKLSQEKYIHKLLDRFYLGDSKTRNTP;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0 -Gmax275_361_rc dante protein_domain 3835 4212 702 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Tork;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Tork;Best_Hit=Ty1-RH__REXdb_ID5204|Class_I|LTR|Ty1/copia|Tork:3835-4212[100percent];Best_Hit_DB_Pos=1:126of126;DB_Seq=YADLGGDFDTKKSTTGYIFTLGGTTVSWKSKLQDRVALSTTEAEYIAISEAAKEMIWLKNFLNELGKEQDDAPMFSDSQSAISLAKNPVFHSRCKHIQLRYHFIRELINDGDLSLLKILGSENPAD;Query_Seq=YADLGGDFDTKKSTTGYIFTLGGTTVSWKSKLQDRVALSTTEAEYIAISEAAKEMIWLKNFLNELGKEQDDAPMFSDSQSAISLAKNPVFHSRCKHIQLRYHFIRELINDGDLSLLKILGSENPAD;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Sitalica164_1034 dante protein_domain 3004 3273 486 + . Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Angela;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Angela;Best_Hit=Ty1-GAG__REXdb_ID1933|Class_I|LTR|Ty1/copia|Angela:3004-3273[100percent];Best_Hit_DB_Pos=1:90of90;DB_Seq=MLACMEPELQMQFKTNHEAHDMIVALRDMFQTxARAERFNVSKAFVESKLAEGAAVGPHVIKMVGYTQRLEKLGFPLGQELATDFILSSL;Query_Seq=MLACMEPELQMQFKTNHEAHDMIVALRDMFQT*ARAERFNVSKAFVESKLAEGAAVGPHVIKMVGYTQRLEKLGFPLGQELATDFILSSL;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.0 -Sitalica164_1034 dante protein_domain 3691 3912 417 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Angela;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Angela;Best_Hit=Ty1-PROT__REXdb_ID1924|Class_I|LTR|Ty1/copia|Angela:3691-3912[100percent];Best_Hit_DB_Pos=1:74of74;DB_Seq=WVFDTGSVAHICNSMQGMIRSRSVERGEVDFRVGNNARVAALTVGTMQLHLPSGFIMELNNCYFVPSLSRNILS;Query_Seq=WVFDTGSVAHICNSMQGMIRSRSVERGEVDFRVGNNARVAALTVGTMQLHLPSGFIMELNNCYFVPSLSRNILS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Sitalica164_1034 dante protein_domain 4106 4696 1131 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Angela;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Angela;Best_Hit=Ty1-INT__REXdb_ID1933|Class_I|LTR|Ty1/copia|Angela:4106-4696[100percent];Best_Hit_DB_Pos=1:197of197;DB_Seq=PCRLGHISEKRMKKLHSDGLLTSFDFESYETCEACLLGKMTKTPFTGFPERAVDLLELVHSDVCGPMSTTARGGFQYFITFTDDFSRYGYVYLMRHKSETFEKFKEFQNEVENQCGKKIKALRSDRGGEYLSHEFSNHLKSCRIVPQLTPPGTPQRNGVSERRNRTLLDMVRSMMSQSDLPLSFWGYALETAAFTLN;Query_Seq=PCRLGHISEKRMKKLHSDGLLTSFDFESYETCEACLLGKMTKTPFTGFPERAVDLLELVHSDVCGPMSTTARGGFQYFITFTDDFSRYGYVYLMRHKSETFEKFKEFQNEVENQCGKKIKALRSDRGGEYLSHEFSNHLKSCRIVPQLTPPGTPQRNGVSERRNRTLLDMVRSMMSQSDLPLSFWGYALETAAFTLN;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Sitalica164_1034 dante protein_domain 5188 5945 1389 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Angela;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Angela;Best_Hit=Ty1-RT__REXdb_ID1933|Class_I|LTR|Ty1/copia|Angela:5188-5945[100percent];Best_Hit_DB_Pos=1:253of253;DB_Seq=WQSAMQSETESMGDNxVWNLVDPP-IECKWIYKKKKDMDGNVHIYKARLVAKGFQQVQGVDYDETFSPVVMLKSIRIILAIVAYFDYEIWQMDVKIAFLNGNLAEDVYMIQPEGFVDPKNAGKVCKFQRSIYGLKQASRSWNIRFDEVVKGFDFTKNEEESCVYKKVSGSSVVFLILYVDDILLIGNNIPMLESVKTSLKNSFSMKDLGEAAYILGIKIYRDRSRRLIGLSQDTYIDKVLKRFSMEEAKKGFLP;Query_Seq=WQSAMQSETESMGDN*VWNLVDPP/IECKWIYKKKKDMDGNVHIYKARLVAKGFQQVQGVDYDETFSPVVMLKSIRIILAIVAYFDYEIWQMDVKIAFLNGNLAEDVYMIQPEGFVDPKNAGKVCKFQRSIYGLKQASRSWNIRFDEVVKGFDFTKNEEESCVYKKVSGSSVVFLILYVDDILLIGNNIPMLESVKTSLKNSFSMKDLGEAAYILGIKIYRDRSRRLIGLSQDTYIDKVLKRFSMEEAKKGFLP;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=0.67;Hit_to_DB_Length=1.0 -Sitalica164_1034 dante protein_domain 6233 6619 727 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Angela;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Angela;Best_Hit=Ty1-RH__REXdb_ID1933|Class_I|LTR|Ty1/copia|Angela:6233-6619[100percent];Best_Hit_DB_Pos=1:129of129;DB_Seq=DASFQTDRDDLKSQSGFVFMLNGGAVSWKSSKQETVANSTTEVEYIAALEAAKEGVWIRNFLIGLGVFPNVSSPLNLYCDNNGAIAQAKEPRNHQKNKHVMRRFHLIRDFVNRGEIKICKIHTDLNISD;Query_Seq=DASFQTDRDDLKSQSGFVFMLNGGAVSWKSSKQETVANSTTEVEYIAALEAAKEGVWIRNFLIGLGVFPNVSSPLNLYCDNNGAIAQAKEPRNHQKNKHVMRRFHLIRDFVNRGEIKICKIHTDLNISD;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Spurpurea289_256_rc dante protein_domain 1045 1345 527 + . Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-GAG__REXdb_ID1014|Class_I|LTR|Ty1/copia|Ale:1045-1345[100percent];Best_Hit_DB_Pos=1:101of101;DB_Seq=LLGTIEPHLIANLRCFTMAQAMWAY-LRRIYHQDHSAQK-FQLExEINSYSQGNLTIEQFYSSFINIWSEYSAIVHAKVPTAALAALQAVHAESQRDQFFMKL;Query_Seq=LLGTIEPHLIANLRCFTMAQAMWAY/LRRIYHQDHSAQK/IQLE*EINSYSQGNLTIEQFYSSFINIWSEYSAIVHAKVPTAALAALQAVHAESQRDQFFMKL;Identity=0.96;Similarity=0.96;Relat_Length=1.0;Relat_Interruptions=1.5;Hit_to_DB_Length=1.02 -Spurpurea289_256_rc dante protein_domain 1817 2011 353 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-PROT__REXdb_ID1014|Class_I|LTR|Ty1/copia|Ale:1817-2011[100percent];Best_Hit_DB_Pos=1:65of65;DB_Seq=LLVDSGASNHMIDNTTDLHDVHEYDGTQSIQIVNGSTHPITAVGNLDSSIKDVFVSPKLSTSLIS;Query_Seq=LLVDSGASNHMIDNTTDLHDVHEYDGTQSIQIVNGSTHPITAVGNLDSSIKDVFVSPKLSTSLIS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Spurpurea289_256_rc dante protein_domain 2201 2790 1070 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-INT__REXdb_ID1014|Class_I|LTR|Ty1/copia|Ale:2201-2790[100percent];Best_Hit_DB_Pos=1:196of196;DB_Seq=HKKLGHPNSVVLTHLLKHGFLGNNNS-SSFDYAICRLGKSKTLPFPVHGNRASTLFEIVHYDVWGASPVISHGQYRYFVIFINDYSRFTWIYFLHSKAGMFSVFQKFVVLVETQFSTCIKILCSDS-GGxYMSNSFQNYLQQKGIISQRSCPYTPKQNGVAERKNRYLLDVVRALLIDSSVPTKFWVEALSTAVYLIN;Query_Seq=HKKLGHPNSVVLTHLLKHGFLGNNNS\SSFDYAICRLGKSKTLPFPVHGNRASTLFEIVHYDVWGASPVISHGQYRYFVIFINDYSRFTWIYFLHSKAGMFSVFQKFVVLVETQFSTCIKILCSDS\GG*YMSNSFQNYLQQKGIISQRSCPYTPKQNGVAERKNRYLLDVVRALLIDSSVPTKFWVEALSTAVYLIN;Identity=0.98;Similarity=0.98;Relat_Length=1.0;Relat_Interruptions=1.5;Hit_to_DB_Length=1.01 -Spurpurea289_256_rc dante protein_domain 3343 4106 1381 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RT__REXdb_ID1014|Class_I|LTR|Ty1/copia|Ale:3343-4106[100percent];Best_Hit_DB_Pos=1:255of255;DB_Seq=WQQAMQEEIQALQDNQTWDLMTCP-PGVKLIGCKWVYSVKFRSDGSLDQYKARLVALGNRQEYGIDYEETFALVAKMTIVRTILALATSQEWSLRQMDVKNTFLHGDFKEEIYMSPPSSMFKTPSSEVCQLRRSLYGLKQAPRVWFDKFRSTLLDFHFIQSQFDSSLFLHKTSAGIVLLLVYVDDIVITRSNTELLKHSQKHLQDSFHMKDLGTLxYFLGLEVxITPTVTLLHQHKYMEEVISLASFQMGNSVLTP;Query_Seq=WQQAMQEEIQALQDNQTWDLMTCP/TGVKLIGCKWVYSVKFRSDGSLDQYKARLVALGNRQEYGIDYEETFALVAKMTIVRTILALATSQEWSLRQMDVKNTFLHGDFKEEIYMSPPSSMFKTPSSEVCQLRRSLYGLKQAPRVWFDKFRSTLLDFHFIQSQFDSSLFLHKTSAGIVLLLVYVDDIVITRSNTELLKHSQKHLQDSFHMKDLGTL*YFLGLEV*ITPTVTLLHQHKYMEEVISLASFQMGNSVLTP;Identity=0.98;Similarity=0.98;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.0 -Spurpurea289_256_rc dante protein_domain 4373 4754 723 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RH__REXdb_ID1014|Class_I|LTR|Ty1/copia|Ale:4373-4754[100percent];Best_Hit_DB_Pos=1:127of127;DB_Seq=DADWAGCADTCRYVTGWCMFF-SNTLISWKSKKQDRVSKSSTESEYRAMSSAYSEITWLRGLLGELGFPQLQSTPLHADNTNAIQIAANPVFHERTKHNEVDCHSIRESFHxHEITLPHISTEHQTAD;Query_Seq=DADWAGCADTCRYVTGWCMFF\SNTLISWKSKKQDRVSKSSTESEYRAMSSAYSEITWLRGLLGELGFPQLQSTPLHADNTNAIQIAANPVFHERTKHNEVDCHSIRESFH*HEITLPHISTEHQTAD;Identity=0.98;Similarity=0.98;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.01 -Stuberosum206_200_rc dante protein_domain 635 935 264 + . Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-GAG__REXdb_ID1200|Class_I|LTR|Ty1/copia|Ale:635-935[100percent];Best_Hit_DB_Pos=1:102of102;DB_Seq=IMNAVRPGLLSSVVYASDAR-KVWLDLRERFDTVNGSRIFQLHREIHSLTQGTMSIADYHSKLRDLWDEYDAIMPCPSCPCPESKNFGEHCDYQRLLQFLMGL;Query_Seq=LMSAVSEDLLSGIVYATSAY\RE--DLKERFDKVNRMRIYQLHREINTLSQGTDSVSTY*TKLKNLWGEFDAFVPSPSCACPKSKEYANHLYQLRLIQFLSGL;Identity=0.53;Similarity=0.71;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.01 -Stuberosum206_200_rc dante protein_domain 1548 1760 189 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-PROT__REXdb_ID1200|Class_I|LTR|Ty1/copia|Ale:1548-1760[100percent];Best_Hit_DB_Pos=1:71of71;DB_Seq=WIIDTGASHHITSDLGLLDKAREVHAxRDSKVHLPNGKVAAVSHIGSTCVLANQSISNVLFLPDFKFNLLS;Query_Seq=WIIDSGASHHITADKHLLANSRCTTDPHHDKVNLPTGDKATISHIGEIFLFDNETVKDVLCVPDFKFNLLS;Identity=0.52;Similarity=0.66;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Stuberosum206_200_rc dante protein_domain 1977 2580 538 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-INT__REXdb_ID1202|Class_I|LTR|Ty1/copia|Ale:1977-2559[96percent];Best_Hit_DB_Pos=1:194of194;DB_Seq=HKRLGHAPIDVIKRHESLSYLSNKDQS---HCTVCPISKQTKLPFALSTHKSKAV-FELLHCDLWGPYRVPTHNGKRFFVTIVDDYSRYTWIFLVTSKVDTIVVIKHFLLQVQNVFSTTVKTFRTDNGCEFFSKDFQNLMCEMGIIHQSTCVYTPQQNGIAERKHRTILAVARSLRFQASIPLRYWGECVTTAVYILN;Query_Seq=HRRLGHPSSHILKCLDLLH--SNKDVELLNSCLVCPLAKQTRLSFPISNSKT-SV\FELVHMDLWGPYKIPTFDKKHYFLTIVDDYSRYTWIHLLQLKSETIVAIKNFLLMIKNQFGHTIKTVRSDNGTEFFNSQCKELFLNLGISDQSNCPHIPQQNGVVERKHRHILNVARAIRFQACMPLRYWGLCVKATVYLIN;Identity=0.54;Similarity=0.7;Relat_Length=1.0;Relat_Interruptions=0.5;Hit_to_DB_Length=1.02 -Stuberosum206_200_rc dante protein_domain 3252 3996 798 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RT__REXdb_ID1202|Class_I|LTR|Ty1/copia|Ale:3252-3996[100percent];Best_Hit_DB_Pos=1:256of256;DB_Seq=WVKAMELEIAALESNKTWSIVDLPPGKKPIGCKWIYKIKFLA-SGEVERFKARLVAKGFSQQEGLDYGETFSRVAKMVTVRSVVALAASRGWFIYQMDVHNAFLNGDLHEEVYMVIPNGFARQGECQKVCKLHKSLYGLKQAPRQWNMKLTEALVQMGFKQSHYDYSLFTKQAGDAVVVILVYVDDLLITGSSHELLCRTRQDIQKRFKMKDLGELKFFLGIEFSRSSKGILMTQRKYALELVSETGLGGAKPVHTP;Query_Seq=WIDAMKLEIKALEDNKTWMVVDLRKDKHAVGSKWI-------\NGEVERFKARLVAKGYSQHEGIHYHDTFSPVAKMVTVRCVIALAVSKGWSLYQMDVYNAFLQGDVDEEVYIEMPEGFRTQGTT-KVCKLIKSLYGLKQASRQWNIKLTNTLLSAGFIQSSHDYSLFTLKKPEGMVIILIYVDDLLITGDNEALIKEVNETLHKQFKLKDLGELKYFLGIEVLRSKNGIILNQRKYMLELISNTGLSGAKTTATP;Identity=0.61;Similarity=0.74;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0 -Stuberosum206_200_rc dante protein_domain 4084 4200 82 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RH__REXdb_ID3204|Class_I|LTR|Ty1/copia|Ivana:4084-4200[100percent];Best_Hit_DB_Pos=12:50of134;DB_Seq=YRSLIGCLMYLTATRPDIMHAVSLLSKKQEIIAQSTAEA;Query_Seq=YQRLVGKLMYATITRPDISYAVQTLSQFMQHPKRSHWEA;Identity=0.49;Similarity=0.64;Relat_Length=0.291;Relat_Interruptions=0.0;Hit_to_DB_Length=0.29 -Stuberosum206_200_rc dante protein_domain 4291 4653 479 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RH__REXdb_ID1202|Class_I|LTR|Ty1/copia|Ale:4291-4638[95percent];Best_Hit_DB_Pos=1:116of127;DB_Seq=DSDWGACLETRKSVTGYLVKFGGGLISWKSKKQGTVSRSSAEAEFRSMAACAAEVTWLIGLYKELGVSLTLPIKMVCDSKAAIQIAANPIFHERTKHIDIDCHFVRERICQGILQT;Query_Seq=DSDWAACPKTRRSVTGYIVKFGESIVSWKSKKQQTISRSSAEAEYRSMTSAVAEVTWLIGLFKELNVSIQMPITVLSDSKSAIQLAANPVFHERTKHIEIDCHFIRDKVKAGVIQT;Identity=0.68;Similarity=0.88;Relat_Length=0.913;Relat_Interruptions=0.0;Hit_to_DB_Length=0.91 -Vvinifera145_640 dante protein_domain 1451 1663 387 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-PROT__REXdb_ID2615|Class_I|LTR|Ty1/copia|Bianca:1451-1663[100percent];Best_Hit_DB_Pos=1:71of71;DB_Seq=CLADCATTHTILQDKRYFLELTLIKANVSNIYGTTNLVEGSGRANITLSNGTRFHINDALYSSKSRRNLLS;Query_Seq=CLADCATTHTILQDKRYFLELTLIKANVSNIYGTTNLVEGSGRANITLSNGTRFHINDALYSSKSRRNLLS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Vvinifera145_640 dante protein_domain 1880 2488 1166 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-INT__REXdb_ID2615|Class_I|LTR|Ty1/copia|Bianca:1880-2488[100percent];Best_Hit_DB_Pos=1:203of203;DB_Seq=HDRLGHPGSSMMRRIIEHSHGHPLKNQKILSPNEYSCAACLQGKLIIRPSFTKVISESPIFLERIHGDICGPIHPPCGPFRYFMILIDASTRWSHVCLLSTRNVAFARLLAQIIRLRAQFPDYPIKTIRLDNVGEFTSQTFIDYCMLVxINIEHPVAHTHTQNGLAESFIKRLQLIARPLLMKTKLPTSAWGHAIMHTAVLVR;Query_Seq=HDRLGHPGSSMMRRIIEHSHGHPLKNQKILSPNEYSCAACLQGKLIIRPSFTKVISESPIFLERIHGDICGPIHPPCGPFRYFMILIDASTRWSHVCLLSTRNVAFARLLAQIIRLRAQFPDYPIKTIRLDNVGEFTSQTFIDYCMLV*INIEHPVAHTHTQNGLAESFIKRLQLIARPLLMKTKLPTSAWGHAIMHTAVLVR;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0 -Vvinifera145_640 dante protein_domain 3419 4212 1416 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RT__REXdb_ID2615|Class_I|LTR|Ty1/copia|Bianca:3428-4212[98percent];Best_Hit_DB_Pos=1:262of262;DB_Seq=WKEAIHAELNSLTKREVFGPVVQTPEDVKPVGCKWVFVRKRNENNEIIRYKAQLVAQGFSxRPGIDYEETYSPVMDAITFRFLISLAVSERLDIRLMDVITTYLYGSMDNDIYM-MKIPExFKLPEANNTKPRSMYSIKLQRSxYGLKxSGRMWYNRLSEYLLKEGYVNNPICPCIFIKSEMGFAIIIVYVDDLNLVGTLEELTRTTNYLKKEFETKDLGKTKSCLGLQIEHFPNGVLVHQSTFIKKVLKCFYMDKAHHLSSP;Query_Seq=WKEAIHAELNSLTKREVFGPVVQTPEDVKPVGCKWVFVRKRNENNEIIRYKAQLVAQGFS*RPGIDYEETYSPVMDAITFRFLISLAVSERLDIRLMDVITTYLYGSMDNDIYI/MKIPE*FKLPEANNTKPRSMYSIKLQRS*YGLK*SGRMWYNRLSEYLLKEGYVNNPICPCIFIKSEMGFAIIIVYVDDLNLVGTLEELTRTTNYLKKEFETKDLGKTKSCLGLQIEHFPNGVLVHQSTFIKKVLKCFYMDKAHHLSSP;Identity=0.98;Similarity=0.98;Relat_Length=1.0;Relat_Interruptions=1.67;Hit_to_DB_Length=1.0 -Vvinifera145_640 dante protein_domain 4507 4908 760 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RH__REXdb_ID2615|Class_I|LTR|Ty1/copia|Bianca:4507-4908[100percent];Best_Hit_DB_Pos=1:134of134;DB_Seq=DAGYFSDPHKGRSxIRYVFNCNGTAISWRSVKQTMVVTSSNHSEILAIHEASRECIWLRSMIQHIRESCGLSSIKGDPTILFEDNVACIAQIAEGYIKGDRTKHISPKFFYTHELQKSGEIDVQQIRSSDNLAD;Query_Seq=DAGYFSDPHKGRS*IRYVFNCNGTAISWRSVKQTMVVTSSNHSEILAIHEASRECIWLRSMIQHIRESCGLSSIKGDPTILFEDNVACIAQIAEGYIKGDRTKHISPKFFYTHELQKSGEIDVQQIRSSDNLAD;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=0.5;Hit_to_DB_Length=1.0 -Fexcel_5 dante protein_domain 527 859 447 + . Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-GAG__REXdb_ID3008|Class_I|LTR|Ty1/copia|Ivana:581-859[83percent];Best_Hit_DB_Pos=1:93of93;DB_Seq=LFQSIDKSILKTIAQKETPKQLWDSMKVKYQGNARVQRAQLQILRRNFEVLEMKLGESVTNYFARVMLVANDMRNLGENMPDVKIVEKILRTL;Query_Seq=LFHSIDKSILKTITQKETSRQLWESMRIKYQGNARVQRAQLQTLRRDFEVLEMKLGESMTNYFARVMLVANDMRNCGEDMPDVKIVEKILRTL;Identity=0.87;Similarity=0.96;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Fexcel_5 dante protein_domain 1241 1453 312 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-PROT__REXdb_ID3199|Class_I|LTR|Ty1/copia|Ivana:1241-1453[100percent];Best_Hit_DB_Pos=1:71of71;DB_Seq=WFLDSGCSNHMTGDKQWFVHLDETFRHTVKLGNNTKMTVMGKGSIKLRVNGINQVITEVYYLPELKNNLLS;Query_Seq=WFLDSGCSNHMTGNKQWFTELDEGYRHSVKLGNNMKMAVMGKGSIKLQVGEVKQVVSDVYYIPDLKNNLLS;Identity=0.75;Similarity=0.89;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Fexcel_5 dante protein_domain 1646 2281 875 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-INT__REXdb_ID3824|Class_I|LTR|Ty1/copia|Ivana:1646-2245[94percent];Best_Hit_DB_Pos=1:200of200;DB_Seq=HCRYGHLSFKGLRTLQYKKMVRGLPQLKASSKVCTDCMVGKQHRDAIPKRSLWRASQRLQLVHADICEPIKPVSNSKKRYLISFIDDYSRKVWIYFLTEKSEAFTTFKNYKNLVEKETGAFICCLRTDRGGEFTSLEFNAFCKTNGISRQLTAAYTPQQNGVAERKNRTIMNMVRSMLSEKQVPKNFWPEAVNWTAHVLN;Query_Seq=HQRFGHLSHKGLLTLQCKKLVKGLPQFKSTSRVCTICMIGKQHRDTIPKKSKWRASERLQLIHADICGPVTPTSNSGKRYMLSFIDDYSRKIWVYFLVEKSETFAWFKVFKSLVEKELGLYICCLRTDRGGEFTSKEFNEFCTVHGIKRQLTTAYTPQQNGVAERKNRTIMNMVRCLLTEKKIPKAFWPEAVKWTAHILN;Identity=0.74;Similarity=0.85;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Fexcel_5 dante protein_domain 2849 3641 1121 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RT__REXdb_ID3636|Class_I|LTR|Ty1/copia|Ivana:2864-3633[97percent];Best_Hit_DB_Pos=1:257of257;DB_Seq=WKAAMDLEIDAIVKNRTWDLVDLPMGAKKIGVKWVYKTKLNENGEVDKYKARLVAKGYAQEHGIDYNEVFAPVARWDTIRMV-LAVAAQKGWMVFQLDVKSAFLHGDLKEAVFVEQPQGYEQEGSKEKVYKLKKALYGLKQAPRAWYSKIENYFLKEGFERCNHESTLFVKTNAGGKVLIISLYVDDLIFTGNDACLIEKFKCSMKSEFEMTDLGKMRYFLGVEVLQSAKGIHLCQKKYANDVLNRFGMKECNPVKNP;Query_Seq=WRSAMDLEIESIIKNKTWELVDLPVGAKRIGVKWVYKTKLNEKGEFDKCKARLVAKGYAQEYGIDYNEVFAPVARWDTIRMG/LALAAQKGWTVFQLDVKSAFLHGELREAVYVDQPLGYIKEGEENKVYKLKKALYGLKQAPRAWYSRIEGYFVKAGFEKCSYEHTLFIKVEGEGKILIVSLYVDDLIFTGNDVCMIENFKSSMMHEFEMTDLGKMKYFLGVEIKQSVEGIHLCQSKYAREVLDRFGMANSNPVRNP;Identity=0.76;Similarity=0.88;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0 -Fexcel_5 dante protein_domain 3661 3774 114 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RH__REXdb_ID3204|Class_I|LTR|Ty1/copia|Ivana:3661-3774[100percent];Best_Hit_DB_Pos=1:38of134;DB_Seq=DDGADKVDEAIYRSLIGCLMYLTATRPDIMHAVSLLSK;Query_Seq=EDGGAEVDGTLYKQLVGSLMYLNATRPDLMYVVCLISR;Identity=0.53;Similarity=0.76;Relat_Length=0.284;Relat_Interruptions=0.0;Hit_to_DB_Length=0.28 -Fexcel_5 dante protein_domain 3901 4281 568 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RH__REXdb_ID3539|Class_I|LTR|Ty1/copia|Ivana:3901-4281[100percent];Best_Hit_DB_Pos=1:127of127;DB_Seq=DSDYAGDTEDRRSTSGYVFLLSGGAVAWSSRKQPVVTLSTTEAEYVAAAACACHSIWMKRVLNSLGFSSCKCVKIFCDNSSTIKLSKNPVLHGRTKHIDIKFHFLRDLVKEGVVELVHCGTSEQMAD;Query_Seq=DSDYAGDSDDSRSTSGFAFMLSGGAVSWSSRKQSVVTLSTTEAEYVAAAACACQSIWMQRVFNKLSHTQCKCVTIFCDNSSTIKLSKNPVFHGRSKHINVRFHFLRDLTKDGIVKLEFCGSSEQLAD;Identity=0.76;Similarity=0.9;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Pabies_54 dante protein_domain 1207 1476 481 + . Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Gymco-II;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Gymco-II;Best_Hit=Ty1-GAG__REXdb_ID2667|Class_I|LTR|Ty1/copia|Gymco-II:1207-1476[100percent];Best_Hit_DB_Pos=1:90of90;DB_Seq=IADSINDHLIPCVSSKNTLKEMFDSLSKLYEGKNINRKMNLRSQLKNTKMQKGETIQEYFSRISEIKKQxKAIGDSIDEDEFVMTALNGL;Query_Seq=IADSINDHLIPCVSSKNTLKEMFDSLSKLYEGKNINRKMNLRSQLKNTKMQKGETIQEYFSRISEIKKQ*KAIGDSIDEDEFVMTALNGL;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.0 -Pabies_54 dante protein_domain 1966 2183 374 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Gymco-II;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Gymco-II;Best_Hit=Ty1-PROT__REXdb_ID2667|Class_I|LTR|Ty1/copia|Gymco-II:1966-2183[100percent];Best_Hit_DB_Pos=1:73of73;DB_Seq=WLIDSGASKHMTRx-ESTLSCISENKFSQKVTLGDDYQYPIKGVGESNYKLDSENSIKMKDVLYVPGLKKNLLS;Query_Seq=WLIDSGASKHMTGK/ESTLSCISENKFSQKVTLGDDYQYPIKGVGESNYKLDSENSIKMKDVLYVPGLKKNLLS;Identity=0.96;Similarity=0.96;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.01 -Pabies_54 dante protein_domain 2370 3035 1130 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Gymco-II;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Gymco-II;Best_Hit=Ty1-INT__REXdb_ID2667|Class_I|LTR|Ty1/copia|Gymco-II:2370-2963[89percent];Best_Hit_DB_Pos=1:198of198;DB_Seq=HRRLAHINYKALPYICKVVTGLPELKVDQEGICNGCAQGKNIKNPFPKRDSKAEGVLELIHSDVCGPMPSSSISGYVYYVSFIDDYSRKTWIYFLKSKDEVFSKFKEFKALIENLSERKIKILRSDNGGAYTSKEFVNFCRDVGINKELTTPYNPQQNGVAERKNRTIMEVVKTMIHDQDLPMCLWAEAAMAVVYVQN;Query_Seq=HRRLAHINYKALPYICKVVTGLPELKVDQEGICNGCAQGKNIKNPFPKRDSKAEGVLELIHSDVCGPMPSSSISGYVYYVSFIDDYSRKTWIYFLKSKDEVFSKFKEFKALIENLSERKIKILRSDNGGAYTSKEFVNFCRDVGINKELTTPYNPQQNGVAERKNRTIMEVVKTMIHDQDLPMCLWAEAAMAVVYVQN;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Pabies_54 dante protein_domain 3600 4315 1347 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Gymco-II;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Gymco-II;Best_Hit=Ty1-RT__REXdb_ID2667|Class_I|LTR|Ty1/copia|Gymco-II:3600-4315[100percent];Best_Hit_DB_Pos=1:239of239;DB_Seq=WADAMTEEYQSIIKNDVWQIVPKPKSKDMVSSKWLFKIKHAADGSIEKYKARFVPRGFSQKEGIDYEETFAPVARYTSIRTIIALAAKMKWKLHQMYVKTTFLNGVIEEEVYIEQPQGFEVEDRKSHVCRLKKALYRLKQAPRAWYGRIDSFLTSLGFTKSKVDSNLYFKIMNDEPVILLLYVDDLFLTREEKIITEC-HYFLGLEVWQSPERIFLNQGKYTVEILKRFDMLECKPMNTP;Query_Seq=WADAMTEEYQSIIKNDVWQIVPKPKSKDMVSSKWLFKIKHAADGSIEKYKARFVPRGFSQKEGIDYEETFAPVARYTSIRTIIALAAKMKWKLHQMYVKTTFLNGVIEEEVYIEQPQGFEVEDRKSHVCRLKKALYRLKQAPRAWYGRIDSFLTSLGFTKSKVDSNLYFKIMNDEPVILLLYVDDLFLTREEKIITEC/HYFLGLEVWQSPERIFLNQGKYTVEILKRFDMLECKPMNTP;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0 -Pabies_54 dante protein_domain 4343 4456 102 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RH__REXdb_ID3204|Class_I|LTR|Ty1/copia|Ivana:4343-4456[100percent];Best_Hit_DB_Pos=1:38of134;DB_Seq=DDGADKVDEAIYRSLIGCLMYLTATRPDIMHAVSLLSK;Query_Seq=DTSSDLIDATLYRQIIGLLMYLTNTRPNICFAVNTLSQ;Identity=0.53;Similarity=0.68;Relat_Length=0.284;Relat_Interruptions=0.0;Hit_to_DB_Length=0.28 -Pabies_54 dante protein_domain 4583 4966 675 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Gymco-II;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Gymco-II;Best_Hit=Ty1-RH__REXdb_ID2667|Class_I|LTR|Ty1/copia|Gymco-II:4583-4966[100percent];Best_Hit_DB_Pos=1:128of128;DB_Seq=DSDWAGSVADRKSTSGCCFSLGSAMISWQSRKQSSVALSIAEAEYIVACSASCEAIWLRKLLIGLF-DLEMEATTILCDNQSCIKM-XXXNPVFHDRSKHIEIRYHYIRDMVQRGALKLQYISTDEQVAD;Query_Seq=DSDWAGSVADRKSTSGCCFSLGSAMISWQSRKQSSVALSIAEAEYIVACSASCEAIWLRKLLIGLL/DLEMEATTILCDNQSCIKM\XXXNPVFHDRSKHIEIRYHYIRDMVQRGALKLQYISTDEQVAD;Identity=0.95;Similarity=0.95;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.02 -Wicker_Bianca_AF521177-1 dante protein_domain 683 830 86 + . Name=RH;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Region_Hits_Classifications=RH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Best_Hit=Ty3-RH__REXdb_ID8306|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:683-830[100percent];Best_Hit_DB_Pos=57:105of253;DB_Seq=SAHPHPVSTRPG-REQGGEAPEPNGGLRPPTAGAGPPPACPTVPGAPDPQ;Query_Seq=SHHPHLEHPDQG\EEEGMEAMGSSSSLRPPSPAIPPPPPAPPLPLTPPPE;Identity=0.4;Similarity=0.48;Relat_Length=0.194;Relat_Interruptions=1.0;Hit_to_DB_Length=0.2 -Wicker_Bianca_AF521177-1 dante protein_domain 2214 2483 350 + . Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-GAG__REXdb_ID2562|Class_I|LTR|Ty1/copia|Bianca:2214-2483[100percent];Best_Hit_DB_Pos=1:90of90;DB_Seq=LRHHLHPDLKSEYMTEKDPLVLWQSLKDRFDQQGSIVLPQAQHDWITLRFQDYKSVAAYNSALHRIISQLRLCGQKITDAEMIEKTLSTF;Query_Seq=LRHHLHSDLKSEYLMEEDPLVLWNSLKERYDQQRAVMLPEAQREWSLIRFQDFKSVAAYNSAVHKVNSKLRFCNQEISEEDLIEKTLCTF;Identity=0.64;Similarity=0.87;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Wicker_Bianca_AF521177-1 dante protein_domain 3336 3548 307 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-PROT__REXdb_ID2563|Class_I|LTR|Ty1/copia|Bianca:3336-3548[100percent];Best_Hit_DB_Pos=1:71of71;DB_Seq=CLVDSCTTNSILRETKYFQTLTKRTGNVLTIAGRDATIVGSGRATITLPMGTQVTIEDALLYPDSTRTLLS;Query_Seq=CLVDSCTSNTILREIKYFQTLTKRKGNIMTIDSRDASIIGSGRATLVLPMGSTIAIEDALLYPQSTRTLLS;Identity=0.76;Similarity=0.89;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Wicker_Bianca_AF521177-1 dante protein_domain 3762 4370 921 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-INT__REXdb_ID2589|Class_I|LTR|Ty1/copia|Bianca:3762-4370[100percent];Best_Hit_DB_Pos=1:203of203;DB_Seq=HDRLGHPGIGMMRKIISNSNGHELNTAKFPKSSDFMCTSCATGKLILRPSPVKIQNEPLKFLERIQGDICGPIQPTSGPFRYFMVLIDASTRWSHVCLLSTRNHAFAKIIAQLIKLRAHNPEHQIQSIRMDNAAEFSSKAFNDYCMALGIQVQHSVPYVHTQNGLAESLIKRIKLIARPLIQNCNLPTSCWGHAVLHAADLIQ;Query_Seq=HDRLGHPGVGMMTKIIDNSIGHSLPTINFSKLSDFVCTACATGKLIIKPSYLKVKNESLNFLERIQGDICGPIQALSGPFRYFMVLIYASTRWSHVCLLSTRNHAFSQLIDQIIKLRANHPKNRIKTIRMDNAAEFSSRAFNDYCMAMGIHLEHFVPYVHTQNGLAESLIKRVKLVARPLLQNCNLPASCWAHAVLHAADLIQ;Identity=0.77;Similarity=0.89;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Wicker_Bianca_AF521177-1 dante protein_domain 5271 6058 1172 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RT__REXdb_ID2589|Class_I|LTR|Ty1/copia|Bianca:5280-6058[98percent];Best_Hit_DB_Pos=1:260of260;DB_Seq=WKEAIKAEIASLTKRGVFTKAIPTPSKVFPVGFKWVFVRKRNENNEVVRYKARLVAQGFTQRPGIDYNETYSPVMSGITFRYLISLAVQNHLSMQLMDVVTAYLYGSLDSDIYMKVPDGIQIPNPNANRNMYCVKLQKSLYGLKQSGRMWYNRLSEFLLNKGYTNNDDCPCVFIKKSQTGFCIISVYVDDLNIIGSPKDIEEARKHL-KTEFEMKDLGKTKYCLGLQIEHRPLGILVHQSAYIQKILEKFNMDKSYPNKTP;Query_Seq=WKEAIEAEVRSLNKREVFSSVIPTPHNVFPVGAKWVFVRKRNENNEVVRYKARLVAQGFTQRPDIDYDDTYSPVMSGITFRYLISLAVQMNLSMQLMDVVTTYLYGSLKSDIYMKVPE*LKMSNPKENRNAYCVKLQKSLYGLKQSGRMWYNRLSEFLIQKGYSNNDDCPCVLIKKSSNGFCIISVYVDDLNIMGSTPDIEEAHNHL/NGEFEMKDLGKTKFCLGLQLEHLPSGILVYQPAYIQKVLENFNMDKSYPTKTP;Identity=0.81;Similarity=0.87;Relat_Length=1.0;Relat_Interruptions=0.67;Hit_to_DB_Length=1.0 -Wicker_Bianca_AF521177-1 dante protein_domain 6353 6767 384 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RH__REXdb_ID2595|Class_I|LTR|Ty1/copia|Bianca:6353-6767[100percent];Best_Hit_DB_Pos=1:133of133;DB_Seq=DAGYLSDPHNARSQSGFVFLHGGTAISWKSSKQTLVATSTNHS-EIISLFEASRECVWLRRMINHIQKSCGIGSIESPTIIYEDNAACVAQMQTRYIKTNI---TKHISPKWFFPHVLQKKGEINIL--QIKSCENLAD;Query_Seq=DXCYLSDPHNVRSQTGFVFLYGGTAFSWKSTKQTLLATSTNHS\ELVAFFEAS*DCVWLRRMINPIQTSCGVGSLGSPTIIYEDNAASPLSQNANVVYVRK*YPHTYILPKVILILSALQKGWRNLIFSQIKSCANLAD;Identity=0.59;Similarity=0.7;Relat_Length=1.0;Relat_Interruptions=1.5;Hit_to_DB_Length=1.05 diff -r cc10173bd0c5 -r ed4d9ede9cb4 tmp/multifasta_win.gff3 --- a/tmp/multifasta_win.gff3 Wed Jul 03 08:10:33 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,58 +0,0 @@ -##gff-version 3 -##----------------------------------------------- -##PIPELINE VERSION : dante-rv-3081(adb2509) -##PROTEIN DATABASE VERSION : Viridiplantae_v3.0_pdb -##----------------------------------------------- -Acoerulea195_58_rc dante protein_domain 1753 1956 368 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|SIRE;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|SIRE;Best_Hit=Ty1-PROT__REXdb_ID3879|Class_I|LTR|Ty1/copia|SIRE:1753-1956[100percent];Best_Hit_DB_Pos=1:68of68;DB_Seq=WLLDSGASKHMSGNAKLFSSVTAIDGGSVTFGNGKSSPVIGKGFVAGIGLSPNDVCLLVDGLRVNLIS;Query_Seq=WLLDSGASKHMSGNAKLFSSVTAIDGGSVTFGNGKSSPVIGKGFVAGIGLSPNDVCLLVDGLRVNLIS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Acoerulea195_58_rc dante protein_domain 2140 2742 1162 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|SIRE;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|SIRE;Best_Hit=Ty1-INT__REXdb_ID3979|Class_I|LTR|Ty1/copia|SIRE:2140-2742[100percent];Best_Hit_DB_Pos=1:201of201;DB_Seq=HQRLGHVNFEHLDNLTRNEYIKGVPRLGRNRDTVCGGCQLGKQIRSPHSKKKSITTSSPLELIHMDLMGPTRTPSLGGKRYILVMVDDYTRFTWVSFLREKSDAFLEFQGICLRIQNEKDTQIKHIRSDRGGEFTATGVIEYCIANGTWQEFSAPYTPQQNGVAERKNRVIQEMARAMLHAKDVPTKFWAEVVHTACYIMN;Query_Seq=HQRLGHVNFEHLDNLTRNEYIKGVPRLGRNRDTVCGGCQLGKQIRSPHSKKKSITTSSPLELIHMDLMGPTRTPSLGGKRYILVMVDDYTRFTWVSFLREKSDAFLEFQGICLRIQNEKDTQIKHIRSDRGGEFTATGVIEYCIANGTWQEFSAPYTPQQNGVAERKNRVIQEMARAMLHAKDVPTKFWAEVVHTACYIMN;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Acoerulea195_58_rc dante protein_domain 2815 2958 128 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|SIRE;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|SIRE;Best_Hit=Ty1-RT__REXdb_ID4340|Class_I|LTR|Ty1/copia|SIRE:2815-2958[100percent];Best_Hit_DB_Pos=1:48of256;DB_Seq=HFHIFGIPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTR;Query_Seq=YMRVFGSVCYVCKDRQSLSKFDSRGEVALLLGYSSNSRAFRVFNYTTR;Identity=0.46;Similarity=0.65;Relat_Length=0.188;Relat_Interruptions=0.0;Hit_to_DB_Length=0.19 -Acoerulea195_58_rc dante protein_domain 3268 4199 1404 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|SIRE;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|SIRE;Best_Hit=Ty1-RT__REXdb_ID3881|Class_I|LTR|Ty1/copia|SIRE:3433-4199[82percent];Best_Hit_DB_Pos=1:256of256;DB_Seq=WLVAMQEELGQFKRSDVWTLVPRPTHTNVVGTKWIFKNKLDEFGQIVRNKARLVAQGYSQIEGIDYGETFAPVARLESVRLLLAMACHLNFKLYQMDVKSAFLNGILNEEVYVEQPKGFVDHT-FPNHVFKLQKALYGLKQAPRAWYERLTSFLLGKGFVRGSVDRTLFILRKNTDVLLAQVYVDDIVFGSTCPSLSESFSQLMSSEFEMSLMGELNFFLGLQVKQFDHGAFISQTKYAKELVKKFGLSTSSGQDTP;Query_Seq=WLVAMQEELGQFKRSDVWTLVPRPTHTNVVGTKWIFKNKLDEFGQIVRNKARLVAQGYSQIEGIDYGETFAPVARLESVRLLLAMACHLNFKLYQMDVKSAFLNGILNEEVYVEQPKGFVDHT/FPNHVFKLQKALYGLKQAPRAWYERLTSFLLGKGFVRGSVDRTLFILRKNTDVLLAQVYVDDIVFGSTCPSLSESFSQLMSSEFEMSLMGELNFFLGLQVKQFDHGAFISQTKYAKELVKKFGLSTSSGQDTP;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0 -Acoerulea195_58_rc dante protein_domain 4260 4346 90 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RH__REXdb_ID3204|Class_I|LTR|Ty1/copia|Ivana:4260-4346[100percent];Best_Hit_DB_Pos=12:40of134;DB_Seq=YRSLIGCLMYLTATRPDIMHAVSLLSKKQ;Query_Seq=YRSMIGSLLYLTASRPDISYSVGVCARFQ;Identity=0.55;Similarity=0.83;Relat_Length=0.216;Relat_Interruptions=0.0;Hit_to_DB_Length=0.22 -Acoerulea195_58_rc dante protein_domain 4467 4844 733 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|SIRE;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|SIRE;Best_Hit=Ty1-RH__REXdb_ID3879|Class_I|LTR|Ty1/copia|SIRE:4467-4844[100percent];Best_Hit_DB_Pos=1:126of126;DB_Seq=DADWGGNLDDRHSTSGGCFYVGNNLVSWHSKKQSSVSISSCEAEYIAAASACTQLLWMRQMLRDYGIQQQAMDLFCDNTSTISISKNPVQHSRTKHIDIRHHFLREAVEKGDIVMEFIPTEHQLAD;Query_Seq=DADWGGNLDDRHSTSGGCFYVGNNLVSWHSKKQSSVSISSCEAEYIAAASACTQLLWMRQMLRDYGIQQQAMDLFCDNTSTISISKNPVQHSRTKHIDIRHHFLREAVEKGDIVMEFIPTEHQLAD;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Egrandis201_33_rc dante protein_domain 1161 1367 391 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-PROT__REXdb_ID324|Class_I|LTR|Ty1/copia|Ale:1161-1367[100percent];Best_Hit_DB_Pos=1:69of69;DB_Seq=WIIDTGASDHIVCNQFFFSNIEKLPFPISIQLPNGNTTHVGMTGTVNLSPLITLNNVLYVPSFQFNLIS;Query_Seq=WIIDTGASDHIVCNQFFFSNIEKLPFPISIQLPNGNTTHVGMTGTVNLSPLITLNNVLYVPSFQFNLIS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Egrandis201_33_rc dante protein_domain 1572 2195 1035 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-INT__REXdb_ID324|Class_I|LTR|Ty1/copia|Ale:1584-2123[86percent];Best_Hit_DB_Pos=1:180of180;DB_Seq=HQRLGHTTSFPYPQCHICPLVKQTCAPFQTSNTRLDSIFSLVHVDVWGPYHTLNHDGSWFFLTIVDDLSRATWVFLIQSKNQVLSHLRIFLSLSKTxFGKSICRIRTDNGKELFSGECASFFSSNGILHESTCTYTPQQNEVVERKHRHLLELAWALKFQASIPENFWGDCVVTAVYLIN;Query_Seq=HQRLGHTTSFPYPQCHICPLVKQTCAPFQTSNTRLDSIFSLVHVDVWGPYHTLNHDGSWFFLTIVDDLSRATWVFLIQSKNQVLSHLRIFLSLSKT*FGKSICRIRTDNGKELFSGECASFFSSNGILHESTCTYTPQQNEVVERKHRHLLELAWALKFQASIPENFWGDCVVTAVYLIN;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=0.5;Hit_to_DB_Length=1.0 -Egrandis201_33_rc dante protein_domain 2856 3620 1393 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RT__REXdb_ID324|Class_I|LTR|Ty1/copia|Ale:2856-3619[99percent];Best_Hit_DB_Pos=1:255of255;DB_Seq=WQRAMEVELKALIDNHIWDIVSLPPHRKPIGCKWVYKIN-HKVDGSVERYKARLVAKGFTxRExFDYHETFSSVAKDVTVCSFLSVAAFRNWSMHQMDIHNAFLHGDLEEEIYMDLPQGLRRQGESKVCRLRKSLYGLKxASRQWYTKFTNALTGAGFKQSKHDYALFTWTKVTSSIYLMIYVDDILIMGNDDSVVRKLKEYLHSSFHIKDLGSPKYFLGIEITRSDQGISLSQRKFVMEIISEAGLSGCKLAVIP;Query_Seq=WQRAMEVELKALIDNHIWDIVSLPPHRKPIGCKWVYKIN/YKVDGSVERYKARLVAKGFT*RE*FDYHETFSSVAKDVTVCSFLSVAAFRNWSMHQMDIHNAFLHGDLEEEIYMDLPQGLRRQGESKVCRLRKSLYGLK*ASRQWYTKFTNALTGAGFKQSKHDYALFTWTKVTSSIYLMIYVDDILIMGNDDSVVRKLKEYLHSSFHIKDLGSPKYFLGIEITRSDQGISLSQRKFVMEIISEAGLSGCKLAVIP;Identity=0.98;Similarity=0.98;Relat_Length=1.0;Relat_Interruptions=1.33;Hit_to_DB_Length=1.0 -Egrandis201_33_rc dante protein_domain 3914 4294 717 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RH__REXdb_ID324|Class_I|LTR|Ty1/copia|Ale:3914-4294[100percent];Best_Hit_DB_Pos=1:127of127;DB_Seq=DLDYATCPMSRRSIIGFCIKFGESLLSWKTKKQSTVSLSSAEAKYRSMAKTVCEVVWLRGLLQDLGIQVRGPTLLFCDNDSAIKLAANPILHERTKHIEVDCHFTREKIKEGIIKTRGIRTTEQPAD;Query_Seq=DLDYATCPMSRRSIIGFCIKFGESLLSWKTKKQSTVSLSSAEAKYRSMAKTVCEVVWLRGLLQDLGIQVRGPTLLFCDNDSAIKLAANPILHERTKHIEVDCHFTREKIKEGIIKTRGIRTTEQPAD;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Gmax275_361_rc dante protein_domain 560 829 471 + . Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Tork;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Tork;Best_Hit=Ty1-GAG__REXdb_ID5204|Class_I|LTR|Ty1/copia|Tork:560-829[100percent];Best_Hit_DB_Pos=1:90of90;DB_Seq=IRLTLAKSVVFNIVNEKTTAGLMKALSDMYKKPSAANKVYLMRRLFNLKMGEGISVTDHINEFNTILAQLESVQIKFEDEVKALILLSSL;Query_Seq=IRLTLAKSVVFNIVNEKTTAGLMKALSDMYKKPSAANKVYLMRRLFNLKMGEGISVTDHINEFNTILAQLESVQIKFEDEVKALILLSSL;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Gmax275_361_rc dante protein_domain 1250 1465 402 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Tork;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Tork;Best_Hit=Ty1-PROT__REXdb_ID5202|Class_I|LTR|Ty1/copia|Tork:1250-1465[100percent];Best_Hit_DB_Pos=1:72of72;DB_Seq=WIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINIKTSSGSLWTLHNVRHIPALKRNLIS;Query_Seq=WIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINIKTSSGSLWTLHNVRHIPALKRNLIS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Gmax275_361_rc dante protein_domain 1637 2230 1123 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Tork;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Tork;Best_Hit=Ty1-INT__REXdb_ID5204|Class_I|LTR|Ty1/copia|Tork:1637-2230[100percent];Best_Hit_DB_Pos=1:198of198;DB_Seq=HQRLGHMSEKGMKLMAAKGKLSSLKHVDVGACEHCILGKQKKVSFSRAGKTLKAEKLELVHTDVWGPAPVESVGNSHYYVTFIDDSTRKVWVYFLKNKSDVFSVFKRWKTKVENQTGLKVKNLKSDNGGEYDSQEFKDFCSEHGIRMIKTIPGTPEQNGVAERMNRTLNERARCMRIQSGLPKAFWAEAINTAAYLIN;Query_Seq=HQRLGHMSEKGMKLMAAKGKLSSLKHVDVGACEHCILGKQKKVSFSRAGKTLKAEKLELVHTDVWGPAPVESVGNSHYYVTFIDDSTRKVWVYFLKNKSDVFSVFKRWKTKVENQTGLKVKNLKSDNGGEYDSQEFKDFCSEHGIRMIKTIPGTPEQNGVAERMNRTLNERARCMRIQSGLPKAFWAEAINTAAYLIN;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Gmax275_361_rc dante protein_domain 2777 3549 1427 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Tork;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Tork;Best_Hit=Ty1-RT__REXdb_ID5204|Class_I|LTR|Ty1/copia|Tork:2777-3549[100percent];Best_Hit_DB_Pos=1:258of258;DB_Seq=WELAMKDEMTSLQKNKTW-WSLTEFPEGKKALQNRWVYRLKEESDGRRRYKARLVVKGFQQKQGIDFTEIFSPVVKMTTIRVILSIVAAENLHLEQLDVKTAFLHGDLEEDIYMTQPEGFEVPGKENLVCKLHKSLYGLKQAPRQWYKKFNEFMSNSGFKRCDMDHCCYVKKYTNSYVILVVYVDDMLIAGSSMAEINRLKLQLAENFEMKDLGPAKQILGMRILRNRSEGILKLSQEKYIHKLLDRFYLGDSKTRNTP;Query_Seq=WELAMKDEMTSLQKNKTC/WSLTEFPEGKKALQNRWVYRLKEESDGRRRYKARLVVKGFQQKQGIDFTEIFSPVVKMTTIRVILSIVAAENLHLEQLDVKTAFLHGDLEEDIYMTQPEGFEVPGKENLVCKLHKSLYGLKQAPRQWYKKFNEFMSNSGFKRCDMDHCCYVKKYTNSYVILVVYVDDMLIAGSSMAEINRLKLQLAENFEMKDLGPAKQILGMRILRNRSEGILKLSQEKYIHKLLDRFYLGDSKTRNTP;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0 -Gmax275_361_rc dante protein_domain 3835 4212 702 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Tork;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Tork;Best_Hit=Ty1-RH__REXdb_ID5204|Class_I|LTR|Ty1/copia|Tork:3835-4212[100percent];Best_Hit_DB_Pos=1:126of126;DB_Seq=YADLGGDFDTKKSTTGYIFTLGGTTVSWKSKLQDRVALSTTEAEYIAISEAAKEMIWLKNFLNELGKEQDDAPMFSDSQSAISLAKNPVFHSRCKHIQLRYHFIRELINDGDLSLLKILGSENPAD;Query_Seq=YADLGGDFDTKKSTTGYIFTLGGTTVSWKSKLQDRVALSTTEAEYIAISEAAKEMIWLKNFLNELGKEQDDAPMFSDSQSAISLAKNPVFHSRCKHIQLRYHFIRELINDGDLSLLKILGSENPAD;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Sitalica164_1034 dante protein_domain 3004 3273 486 + . Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Angela;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Angela;Best_Hit=Ty1-GAG__REXdb_ID1933|Class_I|LTR|Ty1/copia|Angela:3004-3273[100percent];Best_Hit_DB_Pos=1:90of90;DB_Seq=MLACMEPELQMQFKTNHEAHDMIVALRDMFQTxARAERFNVSKAFVESKLAEGAAVGPHVIKMVGYTQRLEKLGFPLGQELATDFILSSL;Query_Seq=MLACMEPELQMQFKTNHEAHDMIVALRDMFQT*ARAERFNVSKAFVESKLAEGAAVGPHVIKMVGYTQRLEKLGFPLGQELATDFILSSL;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.0 -Sitalica164_1034 dante protein_domain 3691 3912 417 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Angela;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Angela;Best_Hit=Ty1-PROT__REXdb_ID1924|Class_I|LTR|Ty1/copia|Angela:3691-3912[100percent];Best_Hit_DB_Pos=1:74of74;DB_Seq=WVFDTGSVAHICNSMQGMIRSRSVERGEVDFRVGNNARVAALTVGTMQLHLPSGFIMELNNCYFVPSLSRNILS;Query_Seq=WVFDTGSVAHICNSMQGMIRSRSVERGEVDFRVGNNARVAALTVGTMQLHLPSGFIMELNNCYFVPSLSRNILS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Sitalica164_1034 dante protein_domain 4106 4696 1131 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Angela;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Angela;Best_Hit=Ty1-INT__REXdb_ID1933|Class_I|LTR|Ty1/copia|Angela:4106-4696[100percent];Best_Hit_DB_Pos=1:197of197;DB_Seq=PCRLGHISEKRMKKLHSDGLLTSFDFESYETCEACLLGKMTKTPFTGFPERAVDLLELVHSDVCGPMSTTARGGFQYFITFTDDFSRYGYVYLMRHKSETFEKFKEFQNEVENQCGKKIKALRSDRGGEYLSHEFSNHLKSCRIVPQLTPPGTPQRNGVSERRNRTLLDMVRSMMSQSDLPLSFWGYALETAAFTLN;Query_Seq=PCRLGHISEKRMKKLHSDGLLTSFDFESYETCEACLLGKMTKTPFTGFPERAVDLLELVHSDVCGPMSTTARGGFQYFITFTDDFSRYGYVYLMRHKSETFEKFKEFQNEVENQCGKKIKALRSDRGGEYLSHEFSNHLKSCRIVPQLTPPGTPQRNGVSERRNRTLLDMVRSMMSQSDLPLSFWGYALETAAFTLN;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Sitalica164_1034 dante protein_domain 5188 5945 1389 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Angela;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Angela;Best_Hit=Ty1-RT__REXdb_ID1933|Class_I|LTR|Ty1/copia|Angela:5188-5945[100percent];Best_Hit_DB_Pos=1:253of253;DB_Seq=WQSAMQSETESMGDNxVWNLVDPP-IECKWIYKKKKDMDGNVHIYKARLVAKGFQQVQGVDYDETFSPVVMLKSIRIILAIVAYFDYEIWQMDVKIAFLNGNLAEDVYMIQPEGFVDPKNAGKVCKFQRSIYGLKQASRSWNIRFDEVVKGFDFTKNEEESCVYKKVSGSSVVFLILYVDDILLIGNNIPMLESVKTSLKNSFSMKDLGEAAYILGIKIYRDRSRRLIGLSQDTYIDKVLKRFSMEEAKKGFLP;Query_Seq=WQSAMQSETESMGDN*VWNLVDPP/IECKWIYKKKKDMDGNVHIYKARLVAKGFQQVQGVDYDETFSPVVMLKSIRIILAIVAYFDYEIWQMDVKIAFLNGNLAEDVYMIQPEGFVDPKNAGKVCKFQRSIYGLKQASRSWNIRFDEVVKGFDFTKNEEESCVYKKVSGSSVVFLILYVDDILLIGNNIPMLESVKTSLKNSFSMKDLGEAAYILGIKIYRDRSRRLIGLSQDTYIDKVLKRFSMEEAKKGFLP;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=0.67;Hit_to_DB_Length=1.0 -Sitalica164_1034 dante protein_domain 6233 6619 727 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Angela;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Angela;Best_Hit=Ty1-RH__REXdb_ID1933|Class_I|LTR|Ty1/copia|Angela:6233-6619[100percent];Best_Hit_DB_Pos=1:129of129;DB_Seq=DASFQTDRDDLKSQSGFVFMLNGGAVSWKSSKQETVANSTTEVEYIAALEAAKEGVWIRNFLIGLGVFPNVSSPLNLYCDNNGAIAQAKEPRNHQKNKHVMRRFHLIRDFVNRGEIKICKIHTDLNISD;Query_Seq=DASFQTDRDDLKSQSGFVFMLNGGAVSWKSSKQETVANSTTEVEYIAALEAAKEGVWIRNFLIGLGVFPNVSSPLNLYCDNNGAIAQAKEPRNHQKNKHVMRRFHLIRDFVNRGEIKICKIHTDLNISD;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Spurpurea289_256_rc dante protein_domain 1045 1345 527 + . Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-GAG__REXdb_ID1014|Class_I|LTR|Ty1/copia|Ale:1045-1345[100percent];Best_Hit_DB_Pos=1:101of101;DB_Seq=LLGTIEPHLIANLRCFTMAQAMWAY-LRRIYHQDHSAQK-FQLExEINSYSQGNLTIEQFYSSFINIWSEYSAIVHAKVPTAALAALQAVHAESQRDQFFMKL;Query_Seq=LLGTIEPHLIANLRCFTMAQAMWAY/LRRIYHQDHSAQK/IQLE*EINSYSQGNLTIEQFYSSFINIWSEYSAIVHAKVPTAALAALQAVHAESQRDQFFMKL;Identity=0.96;Similarity=0.96;Relat_Length=1.0;Relat_Interruptions=1.5;Hit_to_DB_Length=1.02 -Spurpurea289_256_rc dante protein_domain 1817 2011 353 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-PROT__REXdb_ID1014|Class_I|LTR|Ty1/copia|Ale:1817-2011[100percent];Best_Hit_DB_Pos=1:65of65;DB_Seq=LLVDSGASNHMIDNTTDLHDVHEYDGTQSIQIVNGSTHPITAVGNLDSSIKDVFVSPKLSTSLIS;Query_Seq=LLVDSGASNHMIDNTTDLHDVHEYDGTQSIQIVNGSTHPITAVGNLDSSIKDVFVSPKLSTSLIS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Spurpurea289_256_rc dante protein_domain 2201 2790 1070 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-INT__REXdb_ID1014|Class_I|LTR|Ty1/copia|Ale:2201-2790[100percent];Best_Hit_DB_Pos=1:196of196;DB_Seq=HKKLGHPNSVVLTHLLKHGFLGNNNS-SSFDYAICRLGKSKTLPFPVHGNRASTLFEIVHYDVWGASPVISHGQYRYFVIFINDYSRFTWIYFLHSKAGMFSVFQKFVVLVETQFSTCIKILCSDS-GGxYMSNSFQNYLQQKGIISQRSCPYTPKQNGVAERKNRYLLDVVRALLIDSSVPTKFWVEALSTAVYLIN;Query_Seq=HKKLGHPNSVVLTHLLKHGFLGNNNS\SSFDYAICRLGKSKTLPFPVHGNRASTLFEIVHYDVWGASPVISHGQYRYFVIFINDYSRFTWIYFLHSKAGMFSVFQKFVVLVETQFSTCIKILCSDS\GG*YMSNSFQNYLQQKGIISQRSCPYTPKQNGVAERKNRYLLDVVRALLIDSSVPTKFWVEALSTAVYLIN;Identity=0.98;Similarity=0.98;Relat_Length=1.0;Relat_Interruptions=1.5;Hit_to_DB_Length=1.01 -Spurpurea289_256_rc dante protein_domain 3343 4106 1381 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RT__REXdb_ID1014|Class_I|LTR|Ty1/copia|Ale:3343-4106[100percent];Best_Hit_DB_Pos=1:255of255;DB_Seq=WQQAMQEEIQALQDNQTWDLMTCP-PGVKLIGCKWVYSVKFRSDGSLDQYKARLVALGNRQEYGIDYEETFALVAKMTIVRTILALATSQEWSLRQMDVKNTFLHGDFKEEIYMSPPSSMFKTPSSEVCQLRRSLYGLKQAPRVWFDKFRSTLLDFHFIQSQFDSSLFLHKTSAGIVLLLVYVDDIVITRSNTELLKHSQKHLQDSFHMKDLGTLxYFLGLEVxITPTVTLLHQHKYMEEVISLASFQMGNSVLTP;Query_Seq=WQQAMQEEIQALQDNQTWDLMTCP/TGVKLIGCKWVYSVKFRSDGSLDQYKARLVALGNRQEYGIDYEETFALVAKMTIVRTILALATSQEWSLRQMDVKNTFLHGDFKEEIYMSPPSSMFKTPSSEVCQLRRSLYGLKQAPRVWFDKFRSTLLDFHFIQSQFDSSLFLHKTSAGIVLLLVYVDDIVITRSNTELLKHSQKHLQDSFHMKDLGTL*YFLGLEV*ITPTVTLLHQHKYMEEVISLASFQMGNSVLTP;Identity=0.98;Similarity=0.98;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.0 -Spurpurea289_256_rc dante protein_domain 4373 4754 723 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RH__REXdb_ID1014|Class_I|LTR|Ty1/copia|Ale:4373-4754[100percent];Best_Hit_DB_Pos=1:127of127;DB_Seq=DADWAGCADTCRYVTGWCMFF-SNTLISWKSKKQDRVSKSSTESEYRAMSSAYSEITWLRGLLGELGFPQLQSTPLHADNTNAIQIAANPVFHERTKHNEVDCHSIRESFHxHEITLPHISTEHQTAD;Query_Seq=DADWAGCADTCRYVTGWCMFF\SNTLISWKSKKQDRVSKSSTESEYRAMSSAYSEITWLRGLLGELGFPQLQSTPLHADNTNAIQIAANPVFHERTKHNEVDCHSIRESFH*HEITLPHISTEHQTAD;Identity=0.98;Similarity=0.98;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.01 -Stuberosum206_200_rc dante protein_domain 635 935 264 + . Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-GAG__REXdb_ID1200|Class_I|LTR|Ty1/copia|Ale:635-935[100percent];Best_Hit_DB_Pos=1:102of102;DB_Seq=IMNAVRPGLLSSVVYASDAR-KVWLDLRERFDTVNGSRIFQLHREIHSLTQGTMSIADYHSKLRDLWDEYDAIMPCPSCPCPESKNFGEHCDYQRLLQFLMGL;Query_Seq=LMSAVSEDLLSGIVYATSAY\RE--DLKERFDKVNRMRIYQLHREINTLSQGTDSVSTY*TKLKNLWGEFDAFVPSPSCACPKSKEYANHLYQLRLIQFLSGL;Identity=0.53;Similarity=0.71;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.01 -Stuberosum206_200_rc dante protein_domain 1548 1760 189 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-PROT__REXdb_ID1200|Class_I|LTR|Ty1/copia|Ale:1548-1760[100percent];Best_Hit_DB_Pos=1:71of71;DB_Seq=WIIDTGASHHITSDLGLLDKAREVHAxRDSKVHLPNGKVAAVSHIGSTCVLANQSISNVLFLPDFKFNLLS;Query_Seq=WIIDSGASHHITADKHLLANSRCTTDPHHDKVNLPTGDKATISHIGEIFLFDNETVKDVLCVPDFKFNLLS;Identity=0.52;Similarity=0.66;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Stuberosum206_200_rc dante protein_domain 1977 2580 538 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-INT__REXdb_ID1202|Class_I|LTR|Ty1/copia|Ale:1977-2559[96percent];Best_Hit_DB_Pos=1:194of194;DB_Seq=HKRLGHAPIDVIKRHESLSYLSNKDQS---HCTVCPISKQTKLPFALSTHKSKAV-FELLHCDLWGPYRVPTHNGKRFFVTIVDDYSRYTWIFLVTSKVDTIVVIKHFLLQVQNVFSTTVKTFRTDNGCEFFSKDFQNLMCEMGIIHQSTCVYTPQQNGIAERKHRTILAVARSLRFQASIPLRYWGECVTTAVYILN;Query_Seq=HRRLGHPSSHILKCLDLLH--SNKDVELLNSCLVCPLAKQTRLSFPISNSKT-SV\FELVHMDLWGPYKIPTFDKKHYFLTIVDDYSRYTWIHLLQLKSETIVAIKNFLLMIKNQFGHTIKTVRSDNGTEFFNSQCKELFLNLGISDQSNCPHIPQQNGVVERKHRHILNVARAIRFQACMPLRYWGLCVKATVYLIN;Identity=0.54;Similarity=0.7;Relat_Length=1.0;Relat_Interruptions=0.5;Hit_to_DB_Length=1.02 -Stuberosum206_200_rc dante protein_domain 3252 3996 798 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RT__REXdb_ID1202|Class_I|LTR|Ty1/copia|Ale:3252-3996[100percent];Best_Hit_DB_Pos=1:256of256;DB_Seq=WVKAMELEIAALESNKTWSIVDLPPGKKPIGCKWIYKIKFLA-SGEVERFKARLVAKGFSQQEGLDYGETFSRVAKMVTVRSVVALAASRGWFIYQMDVHNAFLNGDLHEEVYMVIPNGFARQGECQKVCKLHKSLYGLKQAPRQWNMKLTEALVQMGFKQSHYDYSLFTKQAGDAVVVILVYVDDLLITGSSHELLCRTRQDIQKRFKMKDLGELKFFLGIEFSRSSKGILMTQRKYALELVSETGLGGAKPVHTP;Query_Seq=WIDAMKLEIKALEDNKTWMVVDLRKDKHAVGSKWI-------\NGEVERFKARLVAKGYSQHEGIHYHDTFSPVAKMVTVRCVIALAVSKGWSLYQMDVYNAFLQGDVDEEVYIEMPEGFRTQGTT-KVCKLIKSLYGLKQASRQWNIKLTNTLLSAGFIQSSHDYSLFTLKKPEGMVIILIYVDDLLITGDNEALIKEVNETLHKQFKLKDLGELKYFLGIEVLRSKNGIILNQRKYMLELISNTGLSGAKTTATP;Identity=0.61;Similarity=0.74;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0 -Stuberosum206_200_rc dante protein_domain 4084 4200 82 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RH__REXdb_ID3204|Class_I|LTR|Ty1/copia|Ivana:4084-4200[100percent];Best_Hit_DB_Pos=12:50of134;DB_Seq=YRSLIGCLMYLTATRPDIMHAVSLLSKKQEIIAQSTAEA;Query_Seq=YQRLVGKLMYATITRPDISYAVQTLSQFMQHPKRSHWEA;Identity=0.49;Similarity=0.64;Relat_Length=0.291;Relat_Interruptions=0.0;Hit_to_DB_Length=0.29 -Stuberosum206_200_rc dante protein_domain 4291 4653 479 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RH__REXdb_ID1202|Class_I|LTR|Ty1/copia|Ale:4291-4638[95percent];Best_Hit_DB_Pos=1:116of127;DB_Seq=DSDWGACLETRKSVTGYLVKFGGGLISWKSKKQGTVSRSSAEAEFRSMAACAAEVTWLIGLYKELGVSLTLPIKMVCDSKAAIQIAANPIFHERTKHIDIDCHFVRERICQGILQT;Query_Seq=DSDWAACPKTRRSVTGYIVKFGESIVSWKSKKQQTISRSSAEAEYRSMTSAVAEVTWLIGLFKELNVSIQMPITVLSDSKSAIQLAANPVFHERTKHIEIDCHFIRDKVKAGVIQT;Identity=0.68;Similarity=0.88;Relat_Length=0.913;Relat_Interruptions=0.0;Hit_to_DB_Length=0.91 -Vvinifera145_640 dante protein_domain 1451 1663 387 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-PROT__REXdb_ID2615|Class_I|LTR|Ty1/copia|Bianca:1451-1663[100percent];Best_Hit_DB_Pos=1:71of71;DB_Seq=CLADCATTHTILQDKRYFLELTLIKANVSNIYGTTNLVEGSGRANITLSNGTRFHINDALYSSKSRRNLLS;Query_Seq=CLADCATTHTILQDKRYFLELTLIKANVSNIYGTTNLVEGSGRANITLSNGTRFHINDALYSSKSRRNLLS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Vvinifera145_640 dante protein_domain 1880 2488 1166 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-INT__REXdb_ID2615|Class_I|LTR|Ty1/copia|Bianca:1880-2488[100percent];Best_Hit_DB_Pos=1:203of203;DB_Seq=HDRLGHPGSSMMRRIIEHSHGHPLKNQKILSPNEYSCAACLQGKLIIRPSFTKVISESPIFLERIHGDICGPIHPPCGPFRYFMILIDASTRWSHVCLLSTRNVAFARLLAQIIRLRAQFPDYPIKTIRLDNVGEFTSQTFIDYCMLVxINIEHPVAHTHTQNGLAESFIKRLQLIARPLLMKTKLPTSAWGHAIMHTAVLVR;Query_Seq=HDRLGHPGSSMMRRIIEHSHGHPLKNQKILSPNEYSCAACLQGKLIIRPSFTKVISESPIFLERIHGDICGPIHPPCGPFRYFMILIDASTRWSHVCLLSTRNVAFARLLAQIIRLRAQFPDYPIKTIRLDNVGEFTSQTFIDYCMLV*INIEHPVAHTHTQNGLAESFIKRLQLIARPLLMKTKLPTSAWGHAIMHTAVLVR;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0 -Vvinifera145_640 dante protein_domain 3419 4212 1416 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RT__REXdb_ID2615|Class_I|LTR|Ty1/copia|Bianca:3428-4212[98percent];Best_Hit_DB_Pos=1:262of262;DB_Seq=WKEAIHAELNSLTKREVFGPVVQTPEDVKPVGCKWVFVRKRNENNEIIRYKAQLVAQGFSxRPGIDYEETYSPVMDAITFRFLISLAVSERLDIRLMDVITTYLYGSMDNDIYM-MKIPExFKLPEANNTKPRSMYSIKLQRSxYGLKxSGRMWYNRLSEYLLKEGYVNNPICPCIFIKSEMGFAIIIVYVDDLNLVGTLEELTRTTNYLKKEFETKDLGKTKSCLGLQIEHFPNGVLVHQSTFIKKVLKCFYMDKAHHLSSP;Query_Seq=WKEAIHAELNSLTKREVFGPVVQTPEDVKPVGCKWVFVRKRNENNEIIRYKAQLVAQGFS*RPGIDYEETYSPVMDAITFRFLISLAVSERLDIRLMDVITTYLYGSMDNDIYI/MKIPE*FKLPEANNTKPRSMYSIKLQRS*YGLK*SGRMWYNRLSEYLLKEGYVNNPICPCIFIKSEMGFAIIIVYVDDLNLVGTLEELTRTTNYLKKEFETKDLGKTKSCLGLQIEHFPNGVLVHQSTFIKKVLKCFYMDKAHHLSSP;Identity=0.98;Similarity=0.98;Relat_Length=1.0;Relat_Interruptions=1.67;Hit_to_DB_Length=1.0 -Vvinifera145_640 dante protein_domain 4507 4908 760 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RH__REXdb_ID2615|Class_I|LTR|Ty1/copia|Bianca:4507-4908[100percent];Best_Hit_DB_Pos=1:134of134;DB_Seq=DAGYFSDPHKGRSxIRYVFNCNGTAISWRSVKQTMVVTSSNHSEILAIHEASRECIWLRSMIQHIRESCGLSSIKGDPTILFEDNVACIAQIAEGYIKGDRTKHISPKFFYTHELQKSGEIDVQQIRSSDNLAD;Query_Seq=DAGYFSDPHKGRS*IRYVFNCNGTAISWRSVKQTMVVTSSNHSEILAIHEASRECIWLRSMIQHIRESCGLSSIKGDPTILFEDNVACIAQIAEGYIKGDRTKHISPKFFYTHELQKSGEIDVQQIRSSDNLAD;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=0.5;Hit_to_DB_Length=1.0 -Fexcel_5 dante protein_domain 527 859 447 + . Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-GAG__REXdb_ID3008|Class_I|LTR|Ty1/copia|Ivana:581-859[83percent];Best_Hit_DB_Pos=1:93of93;DB_Seq=LFQSIDKSILKTIAQKETPKQLWDSMKVKYQGNARVQRAQLQILRRNFEVLEMKLGESVTNYFARVMLVANDMRNLGENMPDVKIVEKILRTL;Query_Seq=LFHSIDKSILKTITQKETSRQLWESMRIKYQGNARVQRAQLQTLRRDFEVLEMKLGESMTNYFARVMLVANDMRNCGEDMPDVKIVEKILRTL;Identity=0.87;Similarity=0.96;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Fexcel_5 dante protein_domain 1241 1453 312 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-PROT__REXdb_ID3199|Class_I|LTR|Ty1/copia|Ivana:1241-1453[100percent];Best_Hit_DB_Pos=1:71of71;DB_Seq=WFLDSGCSNHMTGDKQWFVHLDETFRHTVKLGNNTKMTVMGKGSIKLRVNGINQVITEVYYLPELKNNLLS;Query_Seq=WFLDSGCSNHMTGNKQWFTELDEGYRHSVKLGNNMKMAVMGKGSIKLQVGEVKQVVSDVYYIPDLKNNLLS;Identity=0.75;Similarity=0.89;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Fexcel_5 dante protein_domain 1646 2281 875 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-INT__REXdb_ID3824|Class_I|LTR|Ty1/copia|Ivana:1646-2245[94percent];Best_Hit_DB_Pos=1:200of200;DB_Seq=HCRYGHLSFKGLRTLQYKKMVRGLPQLKASSKVCTDCMVGKQHRDAIPKRSLWRASQRLQLVHADICEPIKPVSNSKKRYLISFIDDYSRKVWIYFLTEKSEAFTTFKNYKNLVEKETGAFICCLRTDRGGEFTSLEFNAFCKTNGISRQLTAAYTPQQNGVAERKNRTIMNMVRSMLSEKQVPKNFWPEAVNWTAHVLN;Query_Seq=HQRFGHLSHKGLLTLQCKKLVKGLPQFKSTSRVCTICMIGKQHRDTIPKKSKWRASERLQLIHADICGPVTPTSNSGKRYMLSFIDDYSRKIWVYFLVEKSETFAWFKVFKSLVEKELGLYICCLRTDRGGEFTSKEFNEFCTVHGIKRQLTTAYTPQQNGVAERKNRTIMNMVRCLLTEKKIPKAFWPEAVKWTAHILN;Identity=0.74;Similarity=0.85;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Fexcel_5 dante protein_domain 2849 3641 1121 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RT__REXdb_ID3636|Class_I|LTR|Ty1/copia|Ivana:2864-3633[97percent];Best_Hit_DB_Pos=1:257of257;DB_Seq=WKAAMDLEIDAIVKNRTWDLVDLPMGAKKIGVKWVYKTKLNENGEVDKYKARLVAKGYAQEHGIDYNEVFAPVARWDTIRMV-LAVAAQKGWMVFQLDVKSAFLHGDLKEAVFVEQPQGYEQEGSKEKVYKLKKALYGLKQAPRAWYSKIENYFLKEGFERCNHESTLFVKTNAGGKVLIISLYVDDLIFTGNDACLIEKFKCSMKSEFEMTDLGKMRYFLGVEVLQSAKGIHLCQKKYANDVLNRFGMKECNPVKNP;Query_Seq=WRSAMDLEIESIIKNKTWELVDLPVGAKRIGVKWVYKTKLNEKGEFDKCKARLVAKGYAQEYGIDYNEVFAPVARWDTIRMG/LALAAQKGWTVFQLDVKSAFLHGELREAVYVDQPLGYIKEGEENKVYKLKKALYGLKQAPRAWYSRIEGYFVKAGFEKCSYEHTLFIKVEGEGKILIVSLYVDDLIFTGNDVCMIENFKSSMMHEFEMTDLGKMKYFLGVEIKQSVEGIHLCQSKYAREVLDRFGMANSNPVRNP;Identity=0.76;Similarity=0.88;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0 -Fexcel_5 dante protein_domain 3661 3774 114 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RH__REXdb_ID3204|Class_I|LTR|Ty1/copia|Ivana:3661-3774[100percent];Best_Hit_DB_Pos=1:38of134;DB_Seq=DDGADKVDEAIYRSLIGCLMYLTATRPDIMHAVSLLSK;Query_Seq=EDGGAEVDGTLYKQLVGSLMYLNATRPDLMYVVCLISR;Identity=0.53;Similarity=0.76;Relat_Length=0.284;Relat_Interruptions=0.0;Hit_to_DB_Length=0.28 -Fexcel_5 dante protein_domain 3901 4281 568 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RH__REXdb_ID3539|Class_I|LTR|Ty1/copia|Ivana:3901-4281[100percent];Best_Hit_DB_Pos=1:127of127;DB_Seq=DSDYAGDTEDRRSTSGYVFLLSGGAVAWSSRKQPVVTLSTTEAEYVAAAACACHSIWMKRVLNSLGFSSCKCVKIFCDNSSTIKLSKNPVLHGRTKHIDIKFHFLRDLVKEGVVELVHCGTSEQMAD;Query_Seq=DSDYAGDSDDSRSTSGFAFMLSGGAVSWSSRKQSVVTLSTTEAEYVAAAACACQSIWMQRVFNKLSHTQCKCVTIFCDNSSTIKLSKNPVFHGRSKHINVRFHFLRDLTKDGIVKLEFCGSSEQLAD;Identity=0.76;Similarity=0.9;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Pabies_54 dante protein_domain 1207 1476 481 + . Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Gymco-II;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Gymco-II;Best_Hit=Ty1-GAG__REXdb_ID2667|Class_I|LTR|Ty1/copia|Gymco-II:1207-1476[100percent];Best_Hit_DB_Pos=1:90of90;DB_Seq=IADSINDHLIPCVSSKNTLKEMFDSLSKLYEGKNINRKMNLRSQLKNTKMQKGETIQEYFSRISEIKKQxKAIGDSIDEDEFVMTALNGL;Query_Seq=IADSINDHLIPCVSSKNTLKEMFDSLSKLYEGKNINRKMNLRSQLKNTKMQKGETIQEYFSRISEIKKQ*KAIGDSIDEDEFVMTALNGL;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.0 -Pabies_54 dante protein_domain 1966 2183 374 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Gymco-II;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Gymco-II;Best_Hit=Ty1-PROT__REXdb_ID2667|Class_I|LTR|Ty1/copia|Gymco-II:1966-2183[100percent];Best_Hit_DB_Pos=1:73of73;DB_Seq=WLIDSGASKHMTRx-ESTLSCISENKFSQKVTLGDDYQYPIKGVGESNYKLDSENSIKMKDVLYVPGLKKNLLS;Query_Seq=WLIDSGASKHMTGK/ESTLSCISENKFSQKVTLGDDYQYPIKGVGESNYKLDSENSIKMKDVLYVPGLKKNLLS;Identity=0.96;Similarity=0.96;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.01 -Pabies_54 dante protein_domain 2370 3035 1130 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Gymco-II;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Gymco-II;Best_Hit=Ty1-INT__REXdb_ID2667|Class_I|LTR|Ty1/copia|Gymco-II:2370-2963[89percent];Best_Hit_DB_Pos=1:198of198;DB_Seq=HRRLAHINYKALPYICKVVTGLPELKVDQEGICNGCAQGKNIKNPFPKRDSKAEGVLELIHSDVCGPMPSSSISGYVYYVSFIDDYSRKTWIYFLKSKDEVFSKFKEFKALIENLSERKIKILRSDNGGAYTSKEFVNFCRDVGINKELTTPYNPQQNGVAERKNRTIMEVVKTMIHDQDLPMCLWAEAAMAVVYVQN;Query_Seq=HRRLAHINYKALPYICKVVTGLPELKVDQEGICNGCAQGKNIKNPFPKRDSKAEGVLELIHSDVCGPMPSSSISGYVYYVSFIDDYSRKTWIYFLKSKDEVFSKFKEFKALIENLSERKIKILRSDNGGAYTSKEFVNFCRDVGINKELTTPYNPQQNGVAERKNRTIMEVVKTMIHDQDLPMCLWAEAAMAVVYVQN;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Pabies_54 dante protein_domain 3600 4315 1347 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Gymco-II;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Gymco-II;Best_Hit=Ty1-RT__REXdb_ID2667|Class_I|LTR|Ty1/copia|Gymco-II:3600-4315[100percent];Best_Hit_DB_Pos=1:239of239;DB_Seq=WADAMTEEYQSIIKNDVWQIVPKPKSKDMVSSKWLFKIKHAADGSIEKYKARFVPRGFSQKEGIDYEETFAPVARYTSIRTIIALAAKMKWKLHQMYVKTTFLNGVIEEEVYIEQPQGFEVEDRKSHVCRLKKALYRLKQAPRAWYGRIDSFLTSLGFTKSKVDSNLYFKIMNDEPVILLLYVDDLFLTREEKIITEC-HYFLGLEVWQSPERIFLNQGKYTVEILKRFDMLECKPMNTP;Query_Seq=WADAMTEEYQSIIKNDVWQIVPKPKSKDMVSSKWLFKIKHAADGSIEKYKARFVPRGFSQKEGIDYEETFAPVARYTSIRTIIALAAKMKWKLHQMYVKTTFLNGVIEEEVYIEQPQGFEVEDRKSHVCRLKKALYRLKQAPRAWYGRIDSFLTSLGFTKSKVDSNLYFKIMNDEPVILLLYVDDLFLTREEKIITEC/HYFLGLEVWQSPERIFLNQGKYTVEILKRFDMLECKPMNTP;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0 -Pabies_54 dante protein_domain 4343 4456 102 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RH__REXdb_ID3204|Class_I|LTR|Ty1/copia|Ivana:4343-4456[100percent];Best_Hit_DB_Pos=1:38of134;DB_Seq=DDGADKVDEAIYRSLIGCLMYLTATRPDIMHAVSLLSK;Query_Seq=DTSSDLIDATLYRQIIGLLMYLTNTRPNICFAVNTLSQ;Identity=0.53;Similarity=0.68;Relat_Length=0.284;Relat_Interruptions=0.0;Hit_to_DB_Length=0.28 -Pabies_54 dante protein_domain 4583 4966 675 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Gymco-II;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Gymco-II;Best_Hit=Ty1-RH__REXdb_ID2667|Class_I|LTR|Ty1/copia|Gymco-II:4583-4966[100percent];Best_Hit_DB_Pos=1:128of128;DB_Seq=DSDWAGSVADRKSTSGCCFSLGSAMISWQSRKQSSVALSIAEAEYIVACSASCEAIWLRKLLIGLF-DLEMEATTILCDNQSCIKM-XXXNPVFHDRSKHIEIRYHYIRDMVQRGALKLQYISTDEQVAD;Query_Seq=DSDWAGSVADRKSTSGCCFSLGSAMISWQSRKQSSVALSIAEAEYIVACSASCEAIWLRKLLIGLL/DLEMEATTILCDNQSCIKM\XXXNPVFHDRSKHIEIRYHYIRDMVQRGALKLQYISTDEQVAD;Identity=0.95;Similarity=0.95;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.02 -Wicker_Bianca_AF521177-1 dante protein_domain 683 830 86 + . Name=RH;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Region_Hits_Classifications=RH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Best_Hit=Ty3-RH__REXdb_ID8306|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:683-830[100percent];Best_Hit_DB_Pos=57:105of253;DB_Seq=SAHPHPVSTRPG-REQGGEAPEPNGGLRPPTAGAGPPPACPTVPGAPDPQ;Query_Seq=SHHPHLEHPDQG\EEEGMEAMGSSSSLRPPSPAIPPPPPAPPLPLTPPPE;Identity=0.4;Similarity=0.48;Relat_Length=0.194;Relat_Interruptions=1.0;Hit_to_DB_Length=0.2 -Wicker_Bianca_AF521177-1 dante protein_domain 2214 2483 350 + . Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-GAG__REXdb_ID2562|Class_I|LTR|Ty1/copia|Bianca:2214-2483[100percent];Best_Hit_DB_Pos=1:90of90;DB_Seq=LRHHLHPDLKSEYMTEKDPLVLWQSLKDRFDQQGSIVLPQAQHDWITLRFQDYKSVAAYNSALHRIISQLRLCGQKITDAEMIEKTLSTF;Query_Seq=LRHHLHSDLKSEYLMEEDPLVLWNSLKERYDQQRAVMLPEAQREWSLIRFQDFKSVAAYNSAVHKVNSKLRFCNQEISEEDLIEKTLCTF;Identity=0.64;Similarity=0.87;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Wicker_Bianca_AF521177-1 dante protein_domain 3336 3548 307 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-PROT__REXdb_ID2563|Class_I|LTR|Ty1/copia|Bianca:3336-3548[100percent];Best_Hit_DB_Pos=1:71of71;DB_Seq=CLVDSCTTNSILRETKYFQTLTKRTGNVLTIAGRDATIVGSGRATITLPMGTQVTIEDALLYPDSTRTLLS;Query_Seq=CLVDSCTSNTILREIKYFQTLTKRKGNIMTIDSRDASIIGSGRATLVLPMGSTIAIEDALLYPQSTRTLLS;Identity=0.76;Similarity=0.89;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Wicker_Bianca_AF521177-1 dante protein_domain 3762 4370 921 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-INT__REXdb_ID2589|Class_I|LTR|Ty1/copia|Bianca:3762-4370[100percent];Best_Hit_DB_Pos=1:203of203;DB_Seq=HDRLGHPGIGMMRKIISNSNGHELNTAKFPKSSDFMCTSCATGKLILRPSPVKIQNEPLKFLERIQGDICGPIQPTSGPFRYFMVLIDASTRWSHVCLLSTRNHAFAKIIAQLIKLRAHNPEHQIQSIRMDNAAEFSSKAFNDYCMALGIQVQHSVPYVHTQNGLAESLIKRIKLIARPLIQNCNLPTSCWGHAVLHAADLIQ;Query_Seq=HDRLGHPGVGMMTKIIDNSIGHSLPTINFSKLSDFVCTACATGKLIIKPSYLKVKNESLNFLERIQGDICGPIQALSGPFRYFMVLIYASTRWSHVCLLSTRNHAFSQLIDQIIKLRANHPKNRIKTIRMDNAAEFSSRAFNDYCMAMGIHLEHFVPYVHTQNGLAESLIKRVKLVARPLLQNCNLPASCWAHAVLHAADLIQ;Identity=0.77;Similarity=0.89;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -Wicker_Bianca_AF521177-1 dante protein_domain 5271 6058 1172 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RT__REXdb_ID2589|Class_I|LTR|Ty1/copia|Bianca:5280-6058[98percent];Best_Hit_DB_Pos=1:260of260;DB_Seq=WKEAIKAEIASLTKRGVFTKAIPTPSKVFPVGFKWVFVRKRNENNEVVRYKARLVAQGFTQRPGIDYNETYSPVMSGITFRYLISLAVQNHLSMQLMDVVTAYLYGSLDSDIYMKVPDGIQIPNPNANRNMYCVKLQKSLYGLKQSGRMWYNRLSEFLLNKGYTNNDDCPCVFIKKSQTGFCIISVYVDDLNIIGSPKDIEEARKHL-KTEFEMKDLGKTKYCLGLQIEHRPLGILVHQSAYIQKILEKFNMDKSYPNKTP;Query_Seq=WKEAIEAEVRSLNKREVFSSVIPTPHNVFPVGAKWVFVRKRNENNEVVRYKARLVAQGFTQRPDIDYDDTYSPVMSGITFRYLISLAVQMNLSMQLMDVVTTYLYGSLKSDIYMKVPE*LKMSNPKENRNAYCVKLQKSLYGLKQSGRMWYNRLSEFLIQKGYSNNDDCPCVLIKKSSNGFCIISVYVDDLNIMGSTPDIEEAHNHL/NGEFEMKDLGKTKFCLGLQLEHLPSGILVYQPAYIQKVLENFNMDKSYPTKTP;Identity=0.81;Similarity=0.87;Relat_Length=1.0;Relat_Interruptions=0.67;Hit_to_DB_Length=1.0 -Wicker_Bianca_AF521177-1 dante protein_domain 6353 6767 384 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RH__REXdb_ID2595|Class_I|LTR|Ty1/copia|Bianca:6353-6767[100percent];Best_Hit_DB_Pos=1:133of133;DB_Seq=DAGYLSDPHNARSQSGFVFLHGGTAISWKSSKQTLVATSTNHS-EIISLFEASRECVWLRRMINHIQKSCGIGSIESPTIIYEDNAACVAQMQTRYIKTNI---TKHISPKWFFPHVLQKKGEINIL--QIKSCENLAD;Query_Seq=DXCYLSDPHNVRSQTGFVFLYGGTAFSWKSTKQTLLATSTNHS\ELVAFFEAS*DCVWLRRMINPIQTSCGVGSLGSPTIIYEDNAASPLSQNANVVYVRK*YPHTYILPKVILILSALQKGWRNLIFSQIKSCANLAD;Identity=0.59;Similarity=0.7;Relat_Length=1.0;Relat_Interruptions=1.5;Hit_to_DB_Length=1.05 diff -r cc10173bd0c5 -r ed4d9ede9cb4 tmp/single_fasta.gff3 --- a/tmp/single_fasta.gff3 Wed Jul 03 08:10:33 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,26 +0,0 @@ -##gff-version 3 -##----------------------------------------------- -##PIPELINE VERSION : dante-rv-3081(adb2509) -##PROTEIN DATABASE VERSION : Viridiplantae_v3.0_pdb -##----------------------------------------------- -scaffold146.1|size86774 dante protein_domain 976 1289 293 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RH__REXdb_ID2558|Class_I|LTR|Ty1/copia|Bianca:976-1289[100percent];Best_Hit_DB_Pos=26:134of134;DB_Seq=ISWRSVKQTITATSSNHAELLALHEASRECVWLRSMIQHIQKNCG-LSSGRMDATIIYEDNTACIAQLKEGYIKGDRTKHISPKFF-FTHDLQKDGDISIQQIRSCDNLAD;Query_Seq=ISWRSTKQTIVAISSNHVELLAIHDTSRECVWLRFMIESI-----\IMXXXXXXXXXXXXXXXXXXQLKE*YIKCDRTKHISPKFF\FTQDLQKNGDVIIQQIRSNDNVVD;Identity=0.59;Similarity=0.66;Relat_Length=0.813;Relat_Interruptions=1.5;Hit_to_DB_Length=0.83 -scaffold146.1|size86774 dante protein_domain 6810 7049 153 + . Name=PROT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Region_Hits_Classifications=PROT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Best_Hit=Ty3-PROT__REXdb_ID9702|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:6810-7049[100percent];Best_Hit_DB_Pos=1:80of80;DB_Seq=LVDDGSKVNLLPYRVFQQMGIPEEQLVRDQAPVKGIGGVPVLVEGKVKLALTLGEAPRTRTHYAVFLVVKPPLSYNAILG;Query_Seq=LVDSGASCNLMSKRVMKQMGIPDEKLEFLDATLYAFDRRTIIPAGKIQLPVTLGEEERTRSEMVEFIIVDMDLAYNAILG;Identity=0.44;Similarity=0.62;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -scaffold146.1|size86774 dante protein_domain 7656 8296 . + . Name=RT/INT;Final_Classification=Ambiguous_domain;Region_Hits_Classifications_=RT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand[246bp],INT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand[468bp] -scaffold146.1|size86774 dante protein_domain 8756 9241 538 + . Name=RT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat;Region_Hits_Classifications=RT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand[486bp],RT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Ogre[441bp];Best_Hit=Ty3-RT__REXdb_ID8210|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:8801-9241[90percent];Best_Hit_DB_Pos=27:173of173;DB_Seq=DFTDLNKACPKDSFPLPHIDRLVDSTAGNELLTFMDAFSGYNQIMMNPEDQEKTSFITDRGIYCYKVMPFGLKNAGATYQRLVNKMFHNHLGKTMEVYIDDMLVKSLKKEDHVKHLEECFDILNKYQMKLNPAKCTFGVPSGEFLGY;Query_Seq=DFKGVNKHCQPDPFPLPHIDRLVDAVAGSSLLSTMDAYSGYHQISLAREDQAKSSFLTEDGVFCYVVMPFGLRNAGATYQRLVNKIFADLLGKEMEIYVDDMIVKSLNDEDHIIYLSHCFEVCRTHRLKLNPAKCCFGVRSGKFLGY;Identity=0.63;Similarity=0.8;Relat_Length=0.85;Relat_Interruptions=0.0;Hit_to_DB_Length=0.85 -scaffold146.1|size86774 dante protein_domain 9433 9781 343 + . Name=RH;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Region_Hits_Classifications=RH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Best_Hit=Ty3-RH__REXdb_ID9729|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:9434-9772[97percent];Best_Hit_DB_Pos=1:113of149;DB_Seq=WTEECEEAFQKLKEYLGSPHLLVKPIQGEPLFLYLAVSEHATSSVLVREDDGVQRPIYYTSRALVDAETRYLSLEKIVLALIVSARRLRPYFQAHTIIVLTDQPIRQVLAKPD;Query_Seq=WTDQCDRAFKELKTYLASPPLIVSPTPTETLGLYLAVSEHAVSSVLVAERDGVQHPVYYVSHTLLPAESRYSTVEKFVLALLKSVAKLRHYFESRKVIVYTDQPIKAVLGQSD;Identity=0.58;Similarity=0.73;Relat_Length=0.758;Relat_Interruptions=0.0;Hit_to_DB_Length=0.76 -scaffold146.1|size86774 dante protein_domain 10810 11667 747 + . Name=INT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Region_Hits_Classifications=INT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Best_Hit=Ty3-INT__REXdb_ID9633|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:10819-11667[98percent];Best_Hit_DB_Pos=30:310of310;DB_Seq=RDTHQYVQRCIQCQKFAPLIHKPGEEMTIMSAPCPFAQWGIDLVGPFPQTAGRKKFFIVAVDYFTKWVEAEALSKITEDEVMHFIWKYICCRFGLPRSLVSDNGTQFNGKKIRAWCEEMKITQKFVAVAHPQANGQVESTNRTIVNGLKKRIDELGGSWVDELPSVLWSYRTSAKAATGETPFRLTYGTEAVIPVEVAMDTLRIATF--DEEANDGALRTRLDEIFDLREAAYLHMERSKNLIKARYDQGVRSRSFQIGDLILRRADALKHTGKLEANWEGPY;Query_Seq=RDAMDCVRRCQSCQYFAPINRKPGAEITLTELPCPFDRWGIDILGPFPQSVRQRRFCIVAVEYHSKWIEAEAVASITSEAVKKFVMNNIIVRFGCPRVLVSDNGPQFISDKFATFCEEYGIQQRTSSVYHPQTNGQAEASNKIILHGLRRNLDSLGGSWPDQLPHVLWAYRTTPKSSTGETPFSLVYGSEAVAPVESTIITPRIAAYMHTESANTEFRELDLDLLEERRNEVYGRVRKQQRALRKRYNQRVRPRQFEKGDLILRSVESQGHKGKLDRAWEGPY;Identity=0.49;Similarity=0.66;Relat_Length=0.906;Relat_Interruptions=0.0;Hit_to_DB_Length=0.91 -scaffold146.1|size86774 dante protein_domain 14592 14828 289 + . Name=PROT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Region_Hits_Classifications=PROT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Best_Hit=Ty3-PROT__REXdb_ID6659|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila:14592-14828[100percent];Best_Hit_DB_Pos=1:80of80;DB_Seq=MLDLGASINVMPYSIYNSLNLGPMEETCIIIQLADRSNAYPKGVMEDVLVQVNELVFPADFYILKMEDELSPNPTPILLG;Query_Seq=MVDLGASINLMPYSIYSALQLGPLQGTAIVIKLADRSNTHPEGVIEDVLVQVNNLVFPADFYVLKM-GKAENNDCPLLLG;Identity=0.68;Similarity=0.84;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -scaffold146.1|size86774 dante protein_domain 15420 15995 871 + . Name=RT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Region_Hits_Classifications=RT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Best_Hit=Ty3-RT__REXdb_ID6635|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila:15420-15995[100percent];Best_Hit_DB_Pos=1:192of192;DB_Seq=IYPITDSKWVAPIHVVPKKTGITLVKNKNDELIPTRISSGWRMCVDYRKLNLATRKDHFPLPFMDQMLERLAGKSFYCFLDGYSGYNQIVINPEDQEKTTFTCPFGTYAYRRMPFGLCNAPATFQRCMMSIFSDYVERIIEVFMDDFTVYGDSFDKCLENLSLILKRCIETNLVLNYEKCYFMVEQGIVLGH;Query_Seq=IYAISDSDWVSPVHVVPKKTGFTVERNKNGELVPKRVTNGWRVCIDYRKLNDATRKDHFPLPFIDQMLERLAGKKFYCFLDGYSGYNQVAIAPEDQEKTTFTCTYGTYAFRKMPFGLCNAPATFQRCMLSIFSEFTGKFIEVFMDDFTVYGDSFEGALENLEKVLQRCVEKKLVLNSEKCHFMVRQGIVLGH;Identity=0.76;Similarity=0.88;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -scaffold146.1|size86774 dante protein_domain 16188 16634 623 + . Name=RH;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Region_Hits_Classifications=RH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Best_Hit=Ty3-RH__REXdb_ID6648|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila:16188-16634[100percent];Best_Hit_DB_Pos=1:149of149;DB_Seq=FNEACKVAFDKLKELLTSAPIIQPPDWSLPFEIMCDASNYVVGAVLGQRVGRAAHVIYYTSRTLDSAQCNYSTTEKELLAIVFALEKFRSYLLGTKVIIFSDHAALRYLLAKKEAKPRLIRWILLLQEFNLEIRDKKGTENLVADHLSR;Query_Seq=FNQECQEAFNKLKSLLTAAPIIQPPNWELPFELMCDASNYALGAVLGQKIEGKRHVIYYASKTLSEAQIHYTTTEKELLAIVYALEKFRSYLLGTKITVHSDHAALRHLLSKKESKPRLIRWILLLQEFDLEIKDRAGTENAVADNLSR;Identity=0.74;Similarity=0.87;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -scaffold146.1|size86774 dante protein_domain 24522 24659 149 + . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-PROT__REXdb_ID2599|Class_I|LTR|Ty1/copia|Bianca:24531-24659[93percent];Best_Hit_DB_Pos=29:71of71;DB_Seq=STISGTTNLVEGSGRANIMLPNGTRFHINDALYSSKSRRNLLS;Query_Seq=STIVCEANIVEGSGRATVVLPSGTHIRIDDALYANKSRRNLLS;Identity=0.65;Similarity=0.77;Relat_Length=0.606;Relat_Interruptions=0.0;Hit_to_DB_Length=0.61 -scaffold146.1|size86774 dante protein_domain 24873 25481 913 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-INT__REXdb_ID2558|Class_I|LTR|Ty1/copia|Bianca:24873-25481[100percent];Best_Hit_DB_Pos=1:203of203;DB_Seq=HERLGHPGSIMMRKIIEHSCGHQLKSREILQSNKFSCTSCSQGKLITRPSPTKIGSESLNFLERIHGDICGPIHPPCGPFRYFMVLIDASTRWSHVCLLSTRNQAFARLLAQLIRIRAHFPDYPVKKIRLDNAAEFSSQTFNDYCMSIGIDIEHPVAHVHTQNGLAESFIKRIQLIARPLLMRCKLPISTWGHAILHAATLIR;Query_Seq=HDRLGHPGMIMMRKIIRTTSGHSLKNREILHPREYICTACAQGKLITRPSPVKIMNERITFLERIQGDICGPIHPACGPFRYFIVLIDASSRWSHVSLLSTRNHAFARLLSQIIRLRAHFPDYPVKKIRLDNAAEFTSRTFNNYCLAMGIDVEHPVEYVHTQNGLAESLIKRLQLIARPLLMKSKLPVTCWGHAIIHASSLIR;Identity=0.75;Similarity=0.9;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -scaffold146.1|size86774 dante protein_domain 26313 27428 1060 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RT__REXdb_ID2558|Class_I|LTR|Ty1/copia|Bianca:26322-27032[63percent];Best_Hit_DB_Pos=1:237of262;DB_Seq=WKDAIKAELYSLNKRKVFGPVVRTPKGVKPVGYKWVFVRKRNENGEIARYKARLVAQGFSQRPGIDFNETYSPVVDATTFRYLISLIAYEGLNLHMMDVVTAYLYGSLDSDIYMKIPEGFNLPDTNSSGSREDYSIKLNKSLYGLKQSGRMWYNRLSEYLLKEGYKNDSVCPCIFMKRSENEFAIIAVYVDDINIIGTPEELPKAIDCLKKEFEMKDLGKTKFCLGLQIEHLNNGIF;Query_Seq=WKDAIESELKSLNKRDVFGPVVRTPEGVQPVGYKWVFVRKRNDKGEISRYKARLVAQGFSQRPGIDYDETYSPVMDATTFRFLISLAIEYGLDLQLMDVVTAYLYGSLDCEIYMKIPEGFHMPERYSSEPRTDYAIKLNKSLYGLKQSGRMWYNRLSEYLIKEGYKNNLVCPCVFMKKFENEFVIIAVYVDDINIVGTQKALLDAVNCLKREFEMKDLGRTKYCLGLQIEYLKNGIF;Identity=0.78;Similarity=0.91;Relat_Length=0.905;Relat_Interruptions=0.0;Hit_to_DB_Length=0.9 -scaffold146.1|size86774 dante protein_domain 27723 28124 581 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RH__REXdb_ID2558|Class_I|LTR|Ty1/copia|Bianca:27723-28124[100percent];Best_Hit_DB_Pos=1:134of134;DB_Seq=DAGYLSDPHHGRSQTGYLFTSGNTAISWRSVKQTITATSSNHAELLALHEASRECVWLRSMIQHIQKNCGLSSGRMDATIIYEDNTACIAQLKEGYIKGDRTKHISPKFFFTHDLQKDGDISIQQIRSCDNLAD;Query_Seq=DAGYRSDPHNGRSQTGYVFLNKGAAISWRSTKQTIAATSSNHAELLAIHETSRECVWLRSMIESIYNACGLFTDKMPPTVLYEDNSACIIQLKEGYIKGDRTKHISPKFFFTHDLQKNGEVIIQQIRSSDNVAD;Identity=0.75;Similarity=0.84;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -scaffold146.1|size86774 dante protein_domain 9780 9956 178 - . Name=INT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Region_Hits_Classifications=INT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Best_Hit=Ty3-INT__REXdb_ID9635|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:9783-9956[98percent];Best_Hit_DB_Pos=1:58of310;DB_Seq=HRGGCGEHGGARALIQKLHRAGYYWPGMKRDTHQYVQRCIQCQKFAPLIHKPGEEMTI;Query_Seq=HSGLCGNHPGARSLALRIQRAGYYWPTLLRDAMDCVRRCQSCQYFAPINRKPGAEITL;Identity=0.53;Similarity=0.69;Relat_Length=0.187;Relat_Interruptions=0.0;Hit_to_DB_Length=0.19 -scaffold146.1|size86774 dante protein_domain 10299 10658 303 - . Name=aRH;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat;Region_Hits_Classifications=aRH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand[360bp],aRH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Ogre[360bp],aRH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|TatII[360bp];Best_Hit=Ty3-aRH__REXdb_ID9546|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:10299-10658[100percent];Best_Hit_DB_Pos=1:121of121;DB_Seq=WILHVDGASSKQGSGIGIRLQSPYGEVIEQSFCLAFNASNNEAEYESLLAGLRLAVGIGVTKLRAFCNSQLVANQFSGDYEAKDSRMEAYLAQVQELSKKFLSFELARIPRSENSAADSLA;Query_Seq=WNMYIDG-STQSGAGVGVHYITPYGDWINLAVKLQFPATNNVAEYEALLAGMNFALSLGVTRLKTFSDSQLVVEQFSGHFQAKEPMLEAYKSRSQLLAAKFSEFSLEHIPRESNRAADSLA;Identity=0.49;Similarity=0.7;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -scaffold146.1|size86774 dante protein_domain 10701 10817 136 - . Name=RH;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat;Region_Hits_Classifications=RH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Ogre[99bp],RH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand[117bp];Best_Hit=Ty3-RH__REXdb_ID8372|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:10701-10817[100percent];Best_Hit_DB_Pos=279:317of317;DB_Seq=NREGTGRVVKWAIELSEFDLHFEPRHAIKSQALADFVVE;Query_Seq=NTDHTSRLAKWAIKVSAMDIAFEPRKAIKGQALADFVVE;Identity=0.64;Similarity=0.77;Relat_Length=0.123;Relat_Interruptions=0.0;Hit_to_DB_Length=0.12 -scaffold146.1|size86774 dante protein_domain 16797 17666 1057 - . Name=INT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Region_Hits_Classifications=INT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Best_Hit=Ty3-INT__REXdb_ID6633|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila:16812-17666[98percent];Best_Hit_DB_Pos=1:285of313;DB_Seq=HSHSYGGHFGAKRTAHKVLESGFYWPSIFKDAYHFCKSCEKCQRTGNITHKNQMPLTNILVSEIFDVWGIDFMGPFPSSFGNLYILLVVDYVSKWIEAKATRTNDAKVVLDFVRTHIFNRFGIPKAIISDRGTHFCNRSMEALLRKYHVTHRTSTAYHPQTNGQAEISNREIKSILEKIVQPNRRDWSLRLGDALWAYRTAYKSPIGMSPYRMIYGKACHLPVELEHKAFWAIKQCNMDYDAAGIARKLQLQELEEIRNDAYENARIYKEKTKNLHDRMLTRKEF;Query_Seq=HASDYGGHFGPNRTARRILDVGFYWPSIFRDVYQFCRTCDACQRVGNITNRREMPQNYILANEIFDIWGLDFMGPFPQSQGNNYILVAVDYVSKWVEAIPTRTDDGKTVTEFLRKNIFTRYGVPKAIISDRGTHFCNSTMRAMMKKYNVIHKTTTAYHPQGNGQAEATNREIKSILEKVVNKKRSNWSQKLPDALWAYRTAYKTPIGTTPFRLIYGKHCNLPVGLEHKAYWAIREMNFEEGGDAELRQMQLQELDALRLEAYDNSRIYKERLKTYHDKKLLQQNF;Identity=0.61;Similarity=0.79;Relat_Length=0.911;Relat_Interruptions=0.0;Hit_to_DB_Length=0.91 -scaffold146.1|size86774 dante protein_domain 18554 18811 306 - . Name=INT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Region_Hits_Classifications=INT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Best_Hit=Ty3-INT__REXdb_ID6693|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila:18554-18802[96percent];Best_Hit_DB_Pos=231:313of313;DB_Seq=WALRLLNFDNNACGEKRKLQLQELEEMRLNAYESSRIYKERTKAYHDKKLQRREFQPGQQVLLFNSRLRLFPGKLKSKWSGPF;Query_Seq=WAIREMNFEEGGDAELRQMQLQELDALRLEAYDNSRIYKERLKAYHDKKILQQNFREGQQVLLFNSKLRLFPGKLKSRWMGPF;Identity=0.65;Similarity=0.82;Relat_Length=0.265;Relat_Interruptions=0.0;Hit_to_DB_Length=0.27 -scaffold146.1|size86774 dante protein_domain 19158 19478 197 - . Name=INT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Region_Hits_Classifications=INT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Best_Hit=Ty3-INT__REXdb_ID6659|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila:19182-19448[83percent];Best_Hit_DB_Pos=216:304of314;DB_Seq=YGKPCHLPVELEHKAWWAVKQCNMELDVAGQHRxLQLQELEEIRNDAYESSxIYKEKTKAFHDKQILRKNFEVGQKVLIFHSRLKLFPG;Query_Seq=FGKQCKVLVGMEHENYWEIREMNYEEGADVEQKQMQLQKMDALKLEAYDNSRIDKEKLKAHHAKRILQQNCKKRQQVLIFDSKLKMFPG;Identity=0.42;Similarity=0.71;Relat_Length=0.283;Relat_Interruptions=0.0;Hit_to_DB_Length=0.28 -scaffold146.1|size86774 dante protein_domain 19976 20212 259 - . Name=PROT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Region_Hits_Classifications=PROT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Best_Hit=Ty3-PROT__REXdb_ID6659|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila:19976-20212[100percent];Best_Hit_DB_Pos=1:80of80;DB_Seq=MLDLGASINVMPYSIYNSLNLGPMEETCIIIQLADRSNAYPKGVMEDVLVQVNELVFPADFYILKMEDELSPNPTPILLG;Query_Seq=MVDLGASINLMPYYIYSALKLGSLQGTAIIIKLADRSETHPEGVVKDVLAQVNNLVFPADFYVLKM-GEAENDDCPLLLG;Identity=0.62;Similarity=0.79;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -scaffold146.1|size86774 dante protein_domain 28912 29124 216 - . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-PROT__REXdb_ID2599|Class_I|LTR|Ty1/copia|Bianca:28912-29124[100percent];Best_Hit_DB_Pos=1:71of71;DB_Seq=CLADCATTHTILRDKRYFLELTLIKANVSTISGTTNLVEGSGRANIMLPNGTRFHINDALYSSKSRRNLLS;Query_Seq=CLVDSATTHTILKNMRYFTSFEKRDVNIATIVCEANIVEGSGRAVIVLPSGTHIRIDDALYANKSRRNLLS;Identity=0.59;Similarity=0.7;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 diff -r cc10173bd0c5 -r ed4d9ede9cb4 tmp/single_fasta_filtered.gff3 --- a/tmp/single_fasta_filtered.gff3 Wed Jul 03 08:10:33 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,33 +0,0 @@ -##gff-version 3 -##----------------------------------------------- -##PIPELINE VERSION : dante-rv-3081(adb2509) -##PROTEIN DATABASE VERSION : Viridiplantae_v3.0_pdb -##----------------------------------------------- -##CLASSIFICATION ORIGINAL_COUNTS FILTERED_COUNTS -##Ambiguous_domain 1 0 -##Class_I|LTR|Ty1/copia|Bianca 6 5 -##Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila 7 5 -##Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat 3 2 -##Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand 4 2 -##----------------------------------------------- -##SEQ DOMAIN COUNTS -##scaffold146.1|size86774 INT 3 -##scaffold146.1|size86774 PROT 4 -##scaffold146.1|size86774 RH 3 -##scaffold146.1|size86774 RT 3 -##scaffold146.1|size86774 aRH 1 -##----------------------------------------------- -scaffold146.1|size86774 dante protein_domain 976 1289 293 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RH__REXdb_ID2558|Class_I|LTR|Ty1/copia|Bianca:976-1289[100percent];Best_Hit_DB_Pos=26:134of134;DB_Seq=ISWRSVKQTITATSSNHAELLALHEASRECVWLRSMIQHIQKNCG-LSSGRMDATIIYEDNTACIAQLKEGYIKGDRTKHISPKFF-FTHDLQKDGDISIQQIRSCDNLAD;Query_Seq=ISWRSTKQTIVAISSNHVELLAIHDTSRECVWLRFMIESI-----\IMXXXXXXXXXXXXXXXXXXQLKE*YIKCDRTKHISPKFF\FTQDLQKNGDVIIQQIRSNDNVVD;Identity=0.59;Similarity=0.66;Relat_Length=0.813;Relat_Interruptions=1.5;Hit_to_DB_Length=0.83 -scaffold146.1|size86774 dante protein_domain 6810 7049 153 + . Name=PROT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Region_Hits_Classifications=PROT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Best_Hit=Ty3-PROT__REXdb_ID9702|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:6810-7049[100percent];Best_Hit_DB_Pos=1:80of80;DB_Seq=LVDDGSKVNLLPYRVFQQMGIPEEQLVRDQAPVKGIGGVPVLVEGKVKLALTLGEAPRTRTHYAVFLVVKPPLSYNAILG;Query_Seq=LVDSGASCNLMSKRVMKQMGIPDEKLEFLDATLYAFDRRTIIPAGKIQLPVTLGEEERTRSEMVEFIIVDMDLAYNAILG;Identity=0.44;Similarity=0.62;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -scaffold146.1|size86774 dante protein_domain 8756 9241 538 + . Name=RT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat;Region_Hits_Classifications=RT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand[486bp],RT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Ogre[441bp];Best_Hit=Ty3-RT__REXdb_ID8210|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:8801-9241[90percent];Best_Hit_DB_Pos=27:173of173;DB_Seq=DFTDLNKACPKDSFPLPHIDRLVDSTAGNELLTFMDAFSGYNQIMMNPEDQEKTSFITDRGIYCYKVMPFGLKNAGATYQRLVNKMFHNHLGKTMEVYIDDMLVKSLKKEDHVKHLEECFDILNKYQMKLNPAKCTFGVPSGEFLGY;Query_Seq=DFKGVNKHCQPDPFPLPHIDRLVDAVAGSSLLSTMDAYSGYHQISLAREDQAKSSFLTEDGVFCYVVMPFGLRNAGATYQRLVNKIFADLLGKEMEIYVDDMIVKSLNDEDHIIYLSHCFEVCRTHRLKLNPAKCCFGVRSGKFLGY;Identity=0.63;Similarity=0.8;Relat_Length=0.85;Relat_Interruptions=0.0;Hit_to_DB_Length=0.85 -scaffold146.1|size86774 dante protein_domain 10810 11667 747 + . Name=INT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Region_Hits_Classifications=INT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Best_Hit=Ty3-INT__REXdb_ID9633|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:10819-11667[98percent];Best_Hit_DB_Pos=30:310of310;DB_Seq=RDTHQYVQRCIQCQKFAPLIHKPGEEMTIMSAPCPFAQWGIDLVGPFPQTAGRKKFFIVAVDYFTKWVEAEALSKITEDEVMHFIWKYICCRFGLPRSLVSDNGTQFNGKKIRAWCEEMKITQKFVAVAHPQANGQVESTNRTIVNGLKKRIDELGGSWVDELPSVLWSYRTSAKAATGETPFRLTYGTEAVIPVEVAMDTLRIATF--DEEANDGALRTRLDEIFDLREAAYLHMERSKNLIKARYDQGVRSRSFQIGDLILRRADALKHTGKLEANWEGPY;Query_Seq=RDAMDCVRRCQSCQYFAPINRKPGAEITLTELPCPFDRWGIDILGPFPQSVRQRRFCIVAVEYHSKWIEAEAVASITSEAVKKFVMNNIIVRFGCPRVLVSDNGPQFISDKFATFCEEYGIQQRTSSVYHPQTNGQAEASNKIILHGLRRNLDSLGGSWPDQLPHVLWAYRTTPKSSTGETPFSLVYGSEAVAPVESTIITPRIAAYMHTESANTEFRELDLDLLEERRNEVYGRVRKQQRALRKRYNQRVRPRQFEKGDLILRSVESQGHKGKLDRAWEGPY;Identity=0.49;Similarity=0.66;Relat_Length=0.906;Relat_Interruptions=0.0;Hit_to_DB_Length=0.91 -scaffold146.1|size86774 dante protein_domain 14592 14828 289 + . Name=PROT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Region_Hits_Classifications=PROT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Best_Hit=Ty3-PROT__REXdb_ID6659|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila:14592-14828[100percent];Best_Hit_DB_Pos=1:80of80;DB_Seq=MLDLGASINVMPYSIYNSLNLGPMEETCIIIQLADRSNAYPKGVMEDVLVQVNELVFPADFYILKMEDELSPNPTPILLG;Query_Seq=MVDLGASINLMPYSIYSALQLGPLQGTAIVIKLADRSNTHPEGVIEDVLVQVNNLVFPADFYVLKM-GKAENNDCPLLLG;Identity=0.68;Similarity=0.84;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -scaffold146.1|size86774 dante protein_domain 15420 15995 871 + . Name=RT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Region_Hits_Classifications=RT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Best_Hit=Ty3-RT__REXdb_ID6635|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila:15420-15995[100percent];Best_Hit_DB_Pos=1:192of192;DB_Seq=IYPITDSKWVAPIHVVPKKTGITLVKNKNDELIPTRISSGWRMCVDYRKLNLATRKDHFPLPFMDQMLERLAGKSFYCFLDGYSGYNQIVINPEDQEKTTFTCPFGTYAYRRMPFGLCNAPATFQRCMMSIFSDYVERIIEVFMDDFTVYGDSFDKCLENLSLILKRCIETNLVLNYEKCYFMVEQGIVLGH;Query_Seq=IYAISDSDWVSPVHVVPKKTGFTVERNKNGELVPKRVTNGWRVCIDYRKLNDATRKDHFPLPFIDQMLERLAGKKFYCFLDGYSGYNQVAIAPEDQEKTTFTCTYGTYAFRKMPFGLCNAPATFQRCMLSIFSEFTGKFIEVFMDDFTVYGDSFEGALENLEKVLQRCVEKKLVLNSEKCHFMVRQGIVLGH;Identity=0.76;Similarity=0.88;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -scaffold146.1|size86774 dante protein_domain 16188 16634 623 + . Name=RH;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Region_Hits_Classifications=RH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Best_Hit=Ty3-RH__REXdb_ID6648|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila:16188-16634[100percent];Best_Hit_DB_Pos=1:149of149;DB_Seq=FNEACKVAFDKLKELLTSAPIIQPPDWSLPFEIMCDASNYVVGAVLGQRVGRAAHVIYYTSRTLDSAQCNYSTTEKELLAIVFALEKFRSYLLGTKVIIFSDHAALRYLLAKKEAKPRLIRWILLLQEFNLEIRDKKGTENLVADHLSR;Query_Seq=FNQECQEAFNKLKSLLTAAPIIQPPNWELPFELMCDASNYALGAVLGQKIEGKRHVIYYASKTLSEAQIHYTTTEKELLAIVYALEKFRSYLLGTKITVHSDHAALRHLLSKKESKPRLIRWILLLQEFDLEIKDRAGTENAVADNLSR;Identity=0.74;Similarity=0.87;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -scaffold146.1|size86774 dante protein_domain 24873 25481 913 + . Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-INT__REXdb_ID2558|Class_I|LTR|Ty1/copia|Bianca:24873-25481[100percent];Best_Hit_DB_Pos=1:203of203;DB_Seq=HERLGHPGSIMMRKIIEHSCGHQLKSREILQSNKFSCTSCSQGKLITRPSPTKIGSESLNFLERIHGDICGPIHPPCGPFRYFMVLIDASTRWSHVCLLSTRNQAFARLLAQLIRIRAHFPDYPVKKIRLDNAAEFSSQTFNDYCMSIGIDIEHPVAHVHTQNGLAESFIKRIQLIARPLLMRCKLPISTWGHAILHAATLIR;Query_Seq=HDRLGHPGMIMMRKIIRTTSGHSLKNREILHPREYICTACAQGKLITRPSPVKIMNERITFLERIQGDICGPIHPACGPFRYFIVLIDASSRWSHVSLLSTRNHAFARLLSQIIRLRAHFPDYPVKKIRLDNAAEFTSRTFNNYCLAMGIDVEHPVEYVHTQNGLAESLIKRLQLIARPLLMKSKLPVTCWGHAIIHASSLIR;Identity=0.75;Similarity=0.9;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -scaffold146.1|size86774 dante protein_domain 26313 27428 1060 + . Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RT__REXdb_ID2558|Class_I|LTR|Ty1/copia|Bianca:26322-27032[63percent];Best_Hit_DB_Pos=1:237of262;DB_Seq=WKDAIKAELYSLNKRKVFGPVVRTPKGVKPVGYKWVFVRKRNENGEIARYKARLVAQGFSQRPGIDFNETYSPVVDATTFRYLISLIAYEGLNLHMMDVVTAYLYGSLDSDIYMKIPEGFNLPDTNSSGSREDYSIKLNKSLYGLKQSGRMWYNRLSEYLLKEGYKNDSVCPCIFMKRSENEFAIIAVYVDDINIIGTPEELPKAIDCLKKEFEMKDLGKTKFCLGLQIEHLNNGIF;Query_Seq=WKDAIESELKSLNKRDVFGPVVRTPEGVQPVGYKWVFVRKRNDKGEISRYKARLVAQGFSQRPGIDYDETYSPVMDATTFRFLISLAIEYGLDLQLMDVVTAYLYGSLDCEIYMKIPEGFHMPERYSSEPRTDYAIKLNKSLYGLKQSGRMWYNRLSEYLIKEGYKNNLVCPCVFMKKFENEFVIIAVYVDDINIVGTQKALLDAVNCLKREFEMKDLGRTKYCLGLQIEYLKNGIF;Identity=0.78;Similarity=0.91;Relat_Length=0.905;Relat_Interruptions=0.0;Hit_to_DB_Length=0.9 -scaffold146.1|size86774 dante protein_domain 27723 28124 581 + . Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RH__REXdb_ID2558|Class_I|LTR|Ty1/copia|Bianca:27723-28124[100percent];Best_Hit_DB_Pos=1:134of134;DB_Seq=DAGYLSDPHHGRSQTGYLFTSGNTAISWRSVKQTITATSSNHAELLALHEASRECVWLRSMIQHIQKNCGLSSGRMDATIIYEDNTACIAQLKEGYIKGDRTKHISPKFFFTHDLQKDGDISIQQIRSCDNLAD;Query_Seq=DAGYRSDPHNGRSQTGYVFLNKGAAISWRSTKQTIAATSSNHAELLAIHETSRECVWLRSMIESIYNACGLFTDKMPPTVLYEDNSACIIQLKEGYIKGDRTKHISPKFFFTHDLQKNGEVIIQQIRSSDNVAD;Identity=0.75;Similarity=0.84;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -scaffold146.1|size86774 dante protein_domain 10299 10658 303 - . Name=aRH;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat;Region_Hits_Classifications=aRH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand[360bp],aRH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Ogre[360bp],aRH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|TatII[360bp];Best_Hit=Ty3-aRH__REXdb_ID9546|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:10299-10658[100percent];Best_Hit_DB_Pos=1:121of121;DB_Seq=WILHVDGASSKQGSGIGIRLQSPYGEVIEQSFCLAFNASNNEAEYESLLAGLRLAVGIGVTKLRAFCNSQLVANQFSGDYEAKDSRMEAYLAQVQELSKKFLSFELARIPRSENSAADSLA;Query_Seq=WNMYIDG-STQSGAGVGVHYITPYGDWINLAVKLQFPATNNVAEYEALLAGMNFALSLGVTRLKTFSDSQLVVEQFSGHFQAKEPMLEAYKSRSQLLAAKFSEFSLEHIPRESNRAADSLA;Identity=0.49;Similarity=0.7;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -scaffold146.1|size86774 dante protein_domain 16797 17666 1057 - . Name=INT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Region_Hits_Classifications=INT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Best_Hit=Ty3-INT__REXdb_ID6633|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila:16812-17666[98percent];Best_Hit_DB_Pos=1:285of313;DB_Seq=HSHSYGGHFGAKRTAHKVLESGFYWPSIFKDAYHFCKSCEKCQRTGNITHKNQMPLTNILVSEIFDVWGIDFMGPFPSSFGNLYILLVVDYVSKWIEAKATRTNDAKVVLDFVRTHIFNRFGIPKAIISDRGTHFCNRSMEALLRKYHVTHRTSTAYHPQTNGQAEISNREIKSILEKIVQPNRRDWSLRLGDALWAYRTAYKSPIGMSPYRMIYGKACHLPVELEHKAFWAIKQCNMDYDAAGIARKLQLQELEEIRNDAYENARIYKEKTKNLHDRMLTRKEF;Query_Seq=HASDYGGHFGPNRTARRILDVGFYWPSIFRDVYQFCRTCDACQRVGNITNRREMPQNYILANEIFDIWGLDFMGPFPQSQGNNYILVAVDYVSKWVEAIPTRTDDGKTVTEFLRKNIFTRYGVPKAIISDRGTHFCNSTMRAMMKKYNVIHKTTTAYHPQGNGQAEATNREIKSILEKVVNKKRSNWSQKLPDALWAYRTAYKTPIGTTPFRLIYGKHCNLPVGLEHKAYWAIREMNFEEGGDAELRQMQLQELDALRLEAYDNSRIYKERLKTYHDKKLLQQNF;Identity=0.61;Similarity=0.79;Relat_Length=0.911;Relat_Interruptions=0.0;Hit_to_DB_Length=0.91 -scaffold146.1|size86774 dante protein_domain 19976 20212 259 - . Name=PROT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Region_Hits_Classifications=PROT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Best_Hit=Ty3-PROT__REXdb_ID6659|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila:19976-20212[100percent];Best_Hit_DB_Pos=1:80of80;DB_Seq=MLDLGASINVMPYSIYNSLNLGPMEETCIIIQLADRSNAYPKGVMEDVLVQVNELVFPADFYILKMEDELSPNPTPILLG;Query_Seq=MVDLGASINLMPYYIYSALKLGSLQGTAIIIKLADRSETHPEGVVKDVLAQVNNLVFPADFYVLKM-GEAENDDCPLLLG;Identity=0.62;Similarity=0.79;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0 -scaffold146.1|size86774 dante protein_domain 28912 29124 216 - . Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-PROT__REXdb_ID2599|Class_I|LTR|Ty1/copia|Bianca:28912-29124[100percent];Best_Hit_DB_Pos=1:71of71;DB_Seq=CLADCATTHTILRDKRYFLELTLIKANVSTISGTTNLVEGSGRANIMLPNGTRFHINDALYSSKSRRNLLS;Query_Seq=CLVDSATTHTILKNMRYFTSFEKRDVNIATIVCEANIVEGSGRAVIVLPSGTHIRIDDALYANKSRRNLLS;Identity=0.59;Similarity=0.7;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0