Mercurial > repos > petr-novak > dante

changeset 27:064d80d1fa28 draft

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planemo upload commit d8e871f6da54e3feb0b30e5926115c8f6c6a0890
author petr-novak
date Thu, 02 Feb 2023 09:48:58 +0000
parents 02c6dff8c381
children a9c81555f2fb
files dante.xml dante_gff_output_filtering.xml dante_gff_to_dna.xml dante_gff_to_tabular.xml summarize_gff.xml
diffstat 5 files changed, 10 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/dante.xml	Tue Jan 31 15:58:34 2023 +0000
+++ b/dante.xml	Thu Feb 02 09:48:58 2023 +0000
@@ -1,7 +1,7 @@
-<tool id="dante" name="Domain based ANnotation of Transposable Elements - DANTE" version="1.1.7">
+<tool id="dante" name="Domain based ANnotation of Transposable Elements - DANTE" version="1.1.8"">
   <description> Tool for annotation of transposable elements based on the similarity to conserved protein domains database. </description>
   <requirements>
-    <requirement type="package">dante=0.1.7</requirement>
+    <requirement type="package">dante=0.1.8</requirement>
   </requirements>
   <stdio>
     <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" />
--- a/dante_gff_output_filtering.xml	Tue Jan 31 15:58:34 2023 +0000
+++ b/dante_gff_output_filtering.xml	Thu Feb 02 09:48:58 2023 +0000
@@ -1,7 +1,7 @@
-<tool id="domains_filter" name="Protein Domains Filter" version="1.1.7">
+<tool id="domains_filter" name="Protein Domains Filter" version="1.1.8"">
   <description> Tool for filtering of gff3 output from DANTE. Filtering can be performed based domain type and alignment quality. </description>
     <requirements>
-        <requirement type="package">dante=0.1.7</requirement>
+        <requirement type="package">dante=0.1.8</requirement>
     </requirements>
     <stdio>
         <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" />
--- a/dante_gff_to_dna.xml	Tue Jan 31 15:58:34 2023 +0000
+++ b/dante_gff_to_dna.xml	Thu Feb 02 09:48:58 2023 +0000
@@ -1,7 +1,7 @@
-<tool id="domains_extract" name="Extract Domains Nucleotide Sequences" version="1.1.7">
+<tool id="domains_extract" name="Extract Domains Nucleotide Sequences" version="1.1.8"">
   <description> Tool to extract nucleotide sequences of protein domains found by DANTE </description>
   <requirements>
-    <requirement type="package">dante=0.1.7</requirement>
+    <requirement type="package">dante=0.1.8</requirement>
   </requirements>
   <command>
     TEMP_DIR_LINEAGES=\$(mktemp -d) &amp;&amp;
--- a/dante_gff_to_tabular.xml	Tue Jan 31 15:58:34 2023 +0000
+++ b/dante_gff_to_tabular.xml	Thu Feb 02 09:48:58 2023 +0000
@@ -1,6 +1,6 @@
-<tool id="gff_to_tabular" name="Convert dante gff3 to tab delimited file" version="1.1.7" python_template_version="3.5">
+<tool id="gff_to_tabular" name="Convert dante gff3 to tab delimited file" version="1.1.8"" python_template_version="3.5">
     <requirements>
-        <requirement type="package">dante=0.1.7</requirement>
+        <requirement type="package">dante=0.1.8</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         summarize_gff.R '$inputgff' '$output'
--- a/summarize_gff.xml	Tue Jan 31 15:58:34 2023 +0000
+++ b/summarize_gff.xml	Thu Feb 02 09:48:58 2023 +0000
@@ -1,6 +1,6 @@
-<tool id="gff_summary" name="Summarize gff3 output from DANTE" version="0.1.7" python_template_version="3.5">
+<tool id="gff_summary" name="Summarize gff3 output from DANTE" version="1.1.8" python_template_version="3.5">
     <requirements>
-        <requirement type="package">dante=0.1.7</requirement>
+        <requirement type="package">dante=0.1.8</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         summarize_gff.R '$inputgff' '$output' '$group'