Mercurial > repos > petr-novak > dante_ltr

comparison clean_dante_ltr.xml @ 16:7ec262f92d89 draft

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planemo upload commit ba9c740b818bbd5b5a7a5e2afbea827f5bb91419
author petr-novak
date Wed, 10 May 2023 13:07:41 +0000
parents 0ea5d893a057
children d1c3b29b1478
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15:0ea5d893a057 16:7ec262f92d89
1 <tool id="clean_dante_ltr" name="DANTE_LTR retrotransposons filtering" version="0.2.2.2" python_template_version="3.5"> 1 <tool id="clean_dante_ltr" name="DANTE_LTR retrotransposons filtering" version="0.2.2.4" python_template_version="3.5">
2 <requirements> 2 <requirements>
3 <requirement type="package">dante_ltr=0.2.2.2</requirement> 3 <requirement type="package" version="0.2.2.4">dante_ltr</requirement>
4 </requirements> 4 </requirements>
5 <command detect_errors="exit_code"><![CDATA[ 5 <command detect_errors="exit_code"><![CDATA[
6 clean_ltr.R --gff3 '$dante_ltr' --reference_sequence '$reference' --output output --cpu \${GALAXY_SLOTS:-1} 6 clean_ltr.R --gff3 '$dante_ltr' --reference_sequence '$reference' --output output --cpu \${GALAXY_SLOTS:-1}
7 && 7 &&
8 mv output_clean.gff3 $dante_ltr_clean 8 mv output_clean.gff3 $dante_ltr_clean