Mercurial > repos > petr-novak > dante_ltr

comparison dante_ltr_search.xml @ 1:c1498f679b50 draft

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"planemo upload commit e3385df50052b11d3bdd5c997abae5fb1b87ed56"
author petr-novak
date Wed, 09 Mar 2022 09:31:31 +0000
parents 7b0bbe7477c4
children f131886ea194
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0:7b0bbe7477c4 1:c1498f679b50
1 <tool id="dante_ltr_search" name="DANTE_LTR transposable element identification" version="0.1.0" python_template_version="3.5"> 1 <tool id="dante_ltr_search" name="DANTE_LTR transposable element identification" version="0.1.0" python_template_version="3.5">
2 <requirements> 2 <requirements>
3 <requirement type="package">blast</requirement> 3 <requirement type="package">blast</requirement>
4 <requirement type="package">r-optparse</requirement> 4 <requirement type="package">r-optparse</requirement>
5 <requirement type="package">bioconductor-bsgenome</requirement> 5 <requirement type="package">bioconductor-bsgenome</requirement>
6 <requirement type="package">biocondutor-biostrings</requirement> 6 <requirement type="package">bioconductor-biostrings</requirement>
7 <requirement type="package">bioconductor-rtracklayer</requirement> 7 <requirement type="package">bioconductor-rtracklayer</requirement>
8 8
9 </requirements> 9 </requirements>
10 <command detect_errors="exit_code"><![CDATA[ 10 <command detect_errors="exit_code"><![CDATA[
11 Rscript ${__tool_directory__}/extract_putative_ltr.R --gff3 '$dante' --reference_sequence '$reference' --output output --cpu 32 11 Rscript ${__tool_directory__}/extract_putative_ltr.R --gff3 '$dante' --reference_sequence '$reference' --output output --cpu 32