Mercurial > repos > petr-novak > dante_ltr

comparison clean_dante_ltr.xml @ 17:d1c3b29b1478 draft

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planemo upload commit ce025ba66edc87ff8ced32d5fdb36109f12cebf0-dirty
author petr-novak
date Thu, 10 Aug 2023 12:22:28 +0000
parents 7ec262f92d89
children
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16:7ec262f92d89 17:d1c3b29b1478
1 <tool id="clean_dante_ltr" name="DANTE_LTR retrotransposons filtering" version="0.2.2.4" python_template_version="3.5"> 1 <tool id="clean_dante_ltr" name="DANTE_LTR retrotransposons filtering" version="@TOOL_VERSION@" python_template_version="3.5">
2 <requirements> 2 <macros>
3 <requirement type="package" version="0.2.2.4">dante_ltr</requirement> 3 <import>macros.xml</import>
4 </requirements> 4 </macros>
5 <expand macro="requirements" />
5 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
6 clean_ltr.R --gff3 '$dante_ltr' --reference_sequence '$reference' --output output --cpu \${GALAXY_SLOTS:-1} 7 clean_ltr.R --gff3 '$dante_ltr' --reference_sequence '$reference' --output output --cpu \${GALAXY_SLOTS:-1}
7 && 8 &&
8 mv output_clean.gff3 $dante_ltr_clean 9 mv output_clean.gff3 $dante_ltr_clean
9 && 10 &&