Mercurial > repos > petr-novak > dante_ltr

comparison clean_dante_ltr.xml @ 12:ff01d4263391 draft

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"planemo upload commit 414119ad7c44562d2e956b765e97ca113bc35b2b-dirty"
author petr-novak
date Thu, 21 Jul 2022 08:23:15 +0000
parents 9de392f2fc02
children 559940c04c44
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11:54bd36973253 12:ff01d4263391
1 <tool id="clean_dante_ltr" name="DANTE_LTR retrotransposons filtering" version="0.1.6.1" python_template_version="3.5"> 1 <tool id="clean_dante_ltr" name="DANTE_LTR retrotransposons filtering" version="0.1.7.0" python_template_version="3.5">
2 <requirements> 2 <requirements>
3 3
4 <requirement type="package">r-optparse</requirement> 4 <requirement type="package">r-optparse</requirement>
5 <requirement type="package">blast</requirement> 5 <requirement type="package">blast</requirement>
6 <requirement type="package">bioconductor-bsgenome</requirement> 6 <requirement type="package">bioconductor-bsgenome</requirement>
32 <data name="dante_ltr_clean" format="gff3" 32 <data name="dante_ltr_clean" format="gff3"
33 label="Validated LTR retrotransposons annotation (GFF3) based on annotation 33 label="Validated LTR retrotransposons annotation (GFF3) based on annotation
34 $dante_ltr.hid and reference $reference.hid"/> 34 $dante_ltr.hid and reference $reference.hid"/>
35 <data name="rm_lib" format="fasta" label="Non-redundant library of LTR retrotransposons (FASTA) based on annotation $dante_ltr.hid and reference $reference.hid"/> 35 <data name="rm_lib" format="fasta" label="Non-redundant library of LTR retrotransposons (FASTA) based on annotation $dante_ltr.hid and reference $reference.hid"/>
36 36
37 <data name="te_full" format="fasta" label="Library of full length LTR retrotransposons (FASTA) based on annotation $dante_ltr.hid and reference $reference.hid"/> 37 <data name="te_full" format="fasta" label="Library of LTR retrotransposons (FASTA) based on annotation $dante_ltr.hid and reference $reference.hid"/>
38 38
39 <data name="ltr5" format="fasta" label="Library of 5'LTR of retrotransposons (FASTA) based on annotation $dante_ltr.hid and reference $reference.hid"/> 39 <data name="ltr5" format="fasta" label="Library of 5'LTR of retrotransposons (FASTA) based on annotation $dante_ltr.hid and reference $reference.hid"/>
40 40
41 <data name="ltr3" format="fasta" label="Library of 3'LTR of retrotransposons (FASTA) based on annotation $dante_ltr.hid and reference $reference.hid"/> 41 <data name="ltr3" format="fasta" label="Library of 3'LTR of retrotransposons (FASTA) based on annotation $dante_ltr.hid and reference $reference.hid"/>
42 42