Mercurial > repos > petr-novak > dante_ltr
diff extract_putative_ltr.R @ 9:1aa578e6c8b3 draft
"planemo upload commit 9488b982bae902f1868785ec4ad47134dac50ff3"
author | petr-novak |
---|---|
date | Wed, 29 Jun 2022 09:25:54 +0000 |
parents | 9de392f2fc02 |
children |
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--- a/extract_putative_ltr.R Tue Jun 28 12:33:22 2022 +0000 +++ b/extract_putative_ltr.R Wed Jun 29 09:25:54 2022 +0000 @@ -77,6 +77,10 @@ g <- rtracklayer::import("/mnt/raid/users/petr/workspace/ltr_finder_test/test_data/DANTE_filtered_part.gff3") s <- readDNAStringSet("/mnt/raid/users/petr/workspace/ltr_finder_test/test_data/Rbp_part.fa") + # oriza + g <- rtracklayer::import("/mnt/raid/users/petr/workspace/dante_ltr/test_data/big_test_data/DANTE_full_oryza.gff3") + s <- readDNAStringSet("/mnt/raid/users/petr/workspace/dante_ltr/test_data/big_test_data/o_sativa_msu7.0.fasta") + g <- rtracklayer::import("/mnt/raid/users/petr/workspace/dante_ltr/test_data /DANTE_Vfaba_chr5.gff3") s <- readDNAStringSet("/mnt/ceph/454_data/Vicia_faba_assembly/assembly/ver_210910