Mercurial > repos > petr-novak > dante_ltr

diff tests.sh @ 13:559940c04c44 draft

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"planemo upload commit 139c041f671459192beb10ae45a8b371367c23b6"
author petr-novak
date Thu, 11 Aug 2022 07:29:06 +0000
parents ff01d4263391
children
line wrap: on
line diff
--- a/tests.sh	Thu Jul 21 08:23:15 2022 +0000
+++ b/tests.sh	Thu Aug 11 07:29:06 2022 +0000
@@ -41,6 +41,10 @@
 -S 10000000
 cat tmp/test_output5_statistics.csv
 
-echo "Running tests 4, filtering gff"
+echo "Running tests 6, filtering gff"
 ./clean_ltr.R -g tmp/test_output5.gff3 -s test_data/sample_genome.fasta \
 -o tmp/test_output6 -c $NCPU_TO_USE
+
+/detect_putative_ltr_wrapper.py -s test_data/sample_genome_part.fasta \
+-g test_data/sample_DANTE_part.gff3 -o tmp/test_output7 -c $NCPU_TO_USE \
+-S 10000000 -M 2
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