Mercurial > repos > petr-novak > dante_ltr
view do_not_track_info/classification__domain_features_13100_2018_144_MOESM1_ESM.csv @ 7:c33d6583e548 draft
"planemo upload commit 50884f7f0269a0bbde078f24fe5020975693bcd9"
author | petr-novak |
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date | Fri, 24 Jun 2022 14:19:48 +0000 |
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original name REXdb name PROT-RT-RH-INT cluster [type_CL# (members)] Classification (new03) GAG PROT RT RH INT aRH CHD CHDCR eORF-3’F eORF-3’R eORF-5’F eORF-5’R TSD pbs complementary to 3' tRNA end pbs complementary to IR in 5'LTR pbs complementary to 1/2tRNA Acoerulea195_1 REXdb_ID13582 Ty3/gypsy_CL362 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCAAGG (tRNA-Met) - not tested Acoerulea195_100_rc REXdb_ID11935 Ty3/gypsy_CL258 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAAAGCCTGGTTTT (tRNA-Met) - not tested Acoerulea195_1003_rc REXdb_ID9299 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGAAGGGCT (tRNA-Asn) - not tested Acoerulea195_1004_rc REXdb_ID9320 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGGAGGGC (tRNA-Asn) - not tested Acoerulea195_1006_rc REXdb_ID12906 Ty3/gypsy_CL072 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_1010_rc REXdb_ID7619 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1012_rc REXdb_ID6639 Ty3/gypsy_CL110 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGTCGCTGC (tRNA-?) - not tested Acoerulea195_1017 REXdb_ID3879 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 - - not tested Acoerulea195_1019 REXdb_ID1 Ty1/copia_CL068 (13) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Acoerulea195_102_rc REXdb_ID13332 Ty3/gypsy_CL151 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Acoerulea195_1021 REXdb_ID7948 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_1028 REXdb_ID4819 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Acoerulea195_103_rc REXdb_ID3880 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_1031 REXdb_ID8469 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1034_rc REXdb_ID9716 Ty3/gypsy_CL198 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGAAGGGC (tRNA-Asn) - not tested Acoerulea195_1039 REXdb_ID4820 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Acoerulea195_1042_rc REXdb_ID8479 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1048 REXdb_ID3881 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_1049 REXdb_ID3882 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_1054 REXdb_ID7682 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1055 REXdb_ID7683 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1056 REXdb_ID7757 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1061_rc REXdb_ID4821 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_1064_rc REXdb_ID8602 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1067 REXdb_ID4822 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_1070 REXdb_ID7639 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1072 REXdb_ID7845 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGACTAAGGGGA (tRNA-Lys) - not tested Acoerulea195_1075 REXdb_ID7931 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1076_rc REXdb_ID7772 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1077 REXdb_ID7710 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1078_rc REXdb_ID7634 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1080_rc REXdb_ID7826 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1085_rc REXdb_ID7869 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_109_rc REXdb_ID13067 Ty3/gypsy_CL259 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Acoerulea195_1090_rc REXdb_ID4823 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_1098_rc REXdb_ID4824 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Acoerulea195_11 REXdb_ID7943 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1103 REXdb_ID3883 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_1105_rc REXdb_ID8548 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1109 REXdb_ID8562 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1115_rc REXdb_ID4616 Ty1/copia_CL181 (5) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAGACAATATTA not tested Acoerulea195_1116 REXdb_ID7790 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1117_rc REXdb_ID7831 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1118_rc REXdb_ID13081 Ty3/gypsy_CL363 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_1119_rc REXdb_ID3884 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_1122 REXdb_ID7940 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1124_rc REXdb_ID3885 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_1127_rc REXdb_ID7648 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1128 REXdb_ID7732 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_113_rc REXdb_ID7776 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1133 REXdb_ID7640 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1145_rc REXdb_ID7861 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1146_rc REXdb_ID8487 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1150 REXdb_ID9311 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGAAGGGC (tRNA-Asn) - not tested Acoerulea195_1155_rc REXdb_ID8540 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1156_rc REXdb_ID3886 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_1159_rc REXdb_ID8474 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1160 REXdb_ID7741 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1161_rc REXdb_ID7684 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1165 REXdb_ID3887 Ty1/copia_CL238 (4) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Acoerulea195_117 REXdb_ID8568 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1170 REXdb_ID7868 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1171 REXdb_ID7910 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1173 REXdb_ID3008 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCCGAGC (tRNA-?) - not tested Acoerulea195_1175 REXdb_ID7979 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1176 REXdb_ID7720 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1177 REXdb_ID3009 Ty1/copia_CL442 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_1179 REXdb_ID7762 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1180_rc REXdb_ID4825 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_1182_rc REXdb_ID8572 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1183_rc REXdb_ID9336 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGAAGGGC (tRNA-Asn) - not tested Acoerulea195_1185 REXdb_ID8490 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_119 REXdb_ID8507 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 - - not tested Acoerulea195_1190 REXdb_ID7631 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1193 REXdb_ID8586 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1195 REXdb_ID3888 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_1197_rc REXdb_ID8560 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1198_rc REXdb_ID8495 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_120_rc REXdb_ID8558 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1200_rc REXdb_ID7870 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGTCGACTG (tRNA-Asn) - not tested Acoerulea195_1205 REXdb_ID7832 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1208_rc REXdb_ID7846 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_121_rc REXdb_ID9322 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAGGAAGGGG (tRNA-Asn) - not tested Acoerulea195_1212 REXdb_ID7626 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1214_rc REXdb_ID8480 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1216 REXdb_ID3010 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCCGAGC (tRNA-?) - not tested Acoerulea195_1218 REXdb_ID11866 Ty3/gypsy_CL133 (6) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_1219_rc REXdb_ID3011 Ty1/copia_CL094 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAAGTTTT (tRNA-Met) - not tested Acoerulea195_122_rc REXdb_ID7773 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1227 REXdb_ID9337 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGGAGGGCT (tRNA-Asn) - not tested Acoerulea195_1233 REXdb_ID3012 Ty1/copia_CL094 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - + - 5 TGGTATCAGAGCCAAGTTTT (tRNA-Met) - not tested Acoerulea195_1234_rc REXdb_ID4826 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Acoerulea195_1238 REXdb_ID3889 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_124_rc REXdb_ID7784 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1240_rc REXdb_ID7698 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1241 REXdb_ID4827 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Acoerulea195_1244 REXdb_ID3013 Ty1/copia_CL094 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 4 TGGTATCAGAGCCAAGTTTT (tRNA-Met) - not tested Acoerulea195_1249 REXdb_ID7711 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1250_rc REXdb_ID4828 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_1252_rc REXdb_ID4617 Ty1/copia_CL181 (5) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - - not tested Acoerulea195_126 REXdb_ID9342 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGAAGGGCT (tRNA-Asn) - not tested Acoerulea195_1271_rc REXdb_ID7821 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1280_rc REXdb_ID13052 Ty3/gypsy_CL199 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Acoerulea195_1282 REXdb_ID13334 Ty3/gypsy_CL151 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_1286_rc REXdb_ID12909 Ty3/gypsy_CL072 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_1287 REXdb_ID7712 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1291_rc REXdb_ID7802 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_13_rc REXdb_ID7854 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1302 REXdb_ID7671 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1304 REXdb_ID8579 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1306 REXdb_ID8513 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1307_rc REXdb_ID12285 Ty3/gypsy_CL073 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel - + + + + - + - - - not tested not tested 5 TGGTATCAAAGCAAGGTTTCGA (tRNA-Ile) - not tested Acoerulea195_1308 REXdb_ID7886 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_131_rc REXdb_ID8508 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_1312 REXdb_ID4829 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTGTCAGAGGT (tRNA-Lys) - not tested Acoerulea195_1317 REXdb_ID7803 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1319_rc REXdb_ID2 Ty1/copia_CL068 (13) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGAC (tRNA-Met) - not tested Acoerulea195_132 REXdb_ID4618 Ty1/copia_CL443 (2) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - TTTAAGGTTGT not tested Acoerulea195_1322 REXdb_ID7672 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1327 REXdb_ID8570 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1328_rc REXdb_ID3 Ty1/copia_CL068 (13) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCC (tRNA-Met) - not tested Acoerulea195_1343 REXdb_ID4830 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCATAGC (tRNA-?) - not tested Acoerulea195_1348 REXdb_ID7774 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1349_rc REXdb_ID7763 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1355 REXdb_ID4831 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Acoerulea195_136 REXdb_ID4832 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Acoerulea195_1362_rc REXdb_ID11869 Ty3/gypsy_CL133 (6) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Acoerulea195_1366_rc REXdb_ID7879 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTAAGGGGA (tRNA-Lys) - not tested Acoerulea195_1375 REXdb_ID4833 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_1378 REXdb_ID12296 Ty3/gypsy_CL073 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAAAGCAAGGTTTCGA (tRNA-Ile) - not tested Acoerulea195_1383_rc REXdb_ID8039 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1385 REXdb_ID13336 Ty3/gypsy_CL151 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Acoerulea195_1389 REXdb_ID4834 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Acoerulea195_1390 REXdb_ID7905 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1391 REXdb_ID8043 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCTCCGACTG (tRNA-?) - not tested Acoerulea195_1397_rc REXdb_ID7921 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_14 REXdb_ID7999 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_1400 REXdb_ID3890 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_1401_rc REXdb_ID4 Ty1/copia_CL068 (13) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGAC (tRNA-Met) - not tested Acoerulea195_1405_rc REXdb_ID7891 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1406_rc REXdb_ID9304 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGGAGGGC (tRNA-Asn) - not tested Acoerulea195_141_rc REXdb_ID5 Ty1/copia_CL239 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGG (tRNA-Met) - not tested Acoerulea195_1410 REXdb_ID8041 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1413_rc REXdb_ID8018 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1422_rc REXdb_ID7699 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1426_rc REXdb_ID8481 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1429 REXdb_ID6 Ty1/copia_CL068 (13) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGAC (tRNA-Met) - not tested Acoerulea195_1434 REXdb_ID7622 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1437 REXdb_ID3891 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_1441_rc REXdb_ID3892 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_1444 REXdb_ID7911 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_145_rc REXdb_ID7862 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1453_rc REXdb_ID9751 Ty3/gypsy_CL364 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTGCTAGAAGAA (tRNA-Lys) - not tested Acoerulea195_1463 REXdb_ID3893 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_1467 REXdb_ID8482 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1468 REXdb_ID8549 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_147 REXdb_ID7944 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1471 REXdb_ID7653 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTAA (tRNA-Lys) - not tested Acoerulea195_1472_rc REXdb_ID7761 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1475 REXdb_ID9323 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGAAGGGC (tRNA-Asn) - not tested Acoerulea195_1478_rc REXdb_ID4835 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCATAGC (tRNA-?) - not tested Acoerulea195_148 REXdb_ID7777 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1481_rc REXdb_ID11936 Ty3/gypsy_CL258 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATTGGTGG (tRNA-Thr) - not tested Acoerulea195_1488 REXdb_ID3894 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_149_rc REXdb_ID3014 Ty1/copia_CL444 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_1495 REXdb_ID7958 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1498 REXdb_ID4836 Ty1/copia_CL240 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_15 REXdb_ID4837 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Acoerulea195_1514_rc REXdb_ID8529 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1518_rc REXdb_ID13583 Ty3/gypsy_CL365 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Acoerulea195_1520_rc REXdb_ID3895 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_1521 REXdb_ID7778 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1522_rc REXdb_ID4838 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 4 TGGCATCAGAGC (tRNA-Met) - not tested Acoerulea195_1526_rc REXdb_ID7721 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1527_rc REXdb_ID4839 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Acoerulea195_1530 REXdb_ID9329 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGGAGGGCTT (tRNA-Asn) - not tested Acoerulea195_1535 REXdb_ID4840 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Acoerulea195_1536 REXdb_ID7928 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1539_rc REXdb_ID9737 Ty3/gypsy_CL260 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCTG (tRNA-Lys) - not tested Acoerulea195_154_rc REXdb_ID8471 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1544_rc REXdb_ID13472 Ty3/gypsy_CL261 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Acoerulea195_1546_rc REXdb_ID3015 Ty1/copia_CL445 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_1548 REXdb_ID7838 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1551_rc REXdb_ID8499 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1553 REXdb_ID8002 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_1558 REXdb_ID7874 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1561 REXdb_ID8530 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1564 REXdb_ID6643 Ty3/gypsy_CL110 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 - - not tested Acoerulea195_1570 REXdb_ID7623 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1572_rc REXdb_ID3896 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_1574_rc REXdb_ID3897 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_1575_rc REXdb_ID8502 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_1576_rc REXdb_ID7995 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_1578 REXdb_ID7839 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1580 REXdb_ID4841 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Acoerulea195_1582 REXdb_ID3898 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_1584 REXdb_ID2694 Ty1/copia_CL084 (10) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAAAAG (tRNA-?) - not tested Acoerulea195_1588 REXdb_ID7860 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1591 REXdb_ID8578 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1593_rc REXdb_ID7912 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1598_rc REXdb_ID7949 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1599_rc REXdb_ID7887 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_16 REXdb_ID3899 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_1600 REXdb_ID7759 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1602 REXdb_ID7796 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1603_rc REXdb_ID9321 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGAAGGGC (tRNA-Asn) - not tested Acoerulea195_1604_rc REXdb_ID4842 Ty1/copia_CL240 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 - - not tested Acoerulea195_1606 REXdb_ID13584 Ty3/gypsy_CL366 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGAGTGGGATT (tRNA-Leu) - not tested Acoerulea195_1611 REXdb_ID4843 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAACAG (tRNA-Ser) - not tested Acoerulea195_1614_rc REXdb_ID7990 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCTGACTG (tRNA-?) - not tested Acoerulea195_1617 REXdb_ID7673 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1621_rc REXdb_ID8535 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1623_rc REXdb_ID7985 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1626_rc REXdb_ID7918 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1634_rc REXdb_ID3900 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_1640_rc REXdb_ID8027 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGAGGGGATT (tRNA-Lys) - not tested Acoerulea195_1641_rc REXdb_ID7649 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1644_rc REXdb_ID9347 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGGAGGGCTTC (tRNA-Asn) - not tested Acoerulea195_1645_rc REXdb_ID12912 Ty3/gypsy_CL072 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Acoerulea195_1646_rc REXdb_ID12913 Ty3/gypsy_CL072 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 - - not tested Acoerulea195_1648 REXdb_ID8593 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTGTCGACTG (tRNA-Leu) - not tested Acoerulea195_1649 REXdb_ID11790 Ty3/gypsy_CL068 (14) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_1652 REXdb_ID7620 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1653 REXdb_ID8472 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1655_rc REXdb_ID7827 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTA (tRNA-Lys) - not tested Acoerulea195_1657_rc REXdb_ID8026 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGTGGGAATCGA (tRNA-Lys) - not tested Acoerulea195_167_rc REXdb_ID7752 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1684 REXdb_ID3016 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Acoerulea195_1686 REXdb_ID4619 Ty1/copia_CL085 (10) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAGACATAA not tested Acoerulea195_1687 REXdb_ID7847 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_169_rc REXdb_ID7635 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1702 REXdb_ID8561 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1707 REXdb_ID3901 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_1720_rc REXdb_ID7722 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1726 REXdb_ID4844 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_1732 REXdb_ID1789 Ty1/copia_CL148 (6) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Acoerulea195_1735_rc REXdb_ID4845 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_1741_rc REXdb_ID7650 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1742 REXdb_ID8473 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1743_rc REXdb_ID8512 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1765 REXdb_ID3902 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_1767 REXdb_ID6642 Ty3/gypsy_CL110 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 - - not tested Acoerulea195_1770 REXdb_ID4846 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Acoerulea195_1771 REXdb_ID7636 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1776 REXdb_ID7975 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_1779 REXdb_ID4620 Ty1/copia_CL085 (10) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAGACATAA not tested Acoerulea195_179 REXdb_ID7967 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1791 REXdb_ID7779 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1798_rc REXdb_ID8531 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1799 REXdb_ID8536 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_180_rc REXdb_ID12914 Ty3/gypsy_CL072 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_1801_rc REXdb_ID7654 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1810_rc REXdb_ID4847 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGCCT (tRNA-Met) - not tested Acoerulea195_1812 REXdb_ID7991 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1817 REXdb_ID7655 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1821_rc REXdb_ID7637 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1823 REXdb_ID9340 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGAAGGGC (tRNA-Asn) - not tested Acoerulea195_1830_rc REXdb_ID8476 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1831 REXdb_ID7906 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_184_rc REXdb_ID9314 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGGAGGGCTCG (tRNA-Asn) - not tested Acoerulea195_1844_rc REXdb_ID8565 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1846_rc REXdb_ID7840 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_185 REXdb_ID7897 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1852 REXdb_ID7913 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_186_rc REXdb_ID3903 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_1860 REXdb_ID4848 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Acoerulea195_1861_rc REXdb_ID2695 Ty1/copia_CL084 (10) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_1862 REXdb_ID7811 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1864 REXdb_ID4621 Ty1/copia_CL069 (13) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 TGGAGAAATCAG (tRNA-Ala) CTTAAGGTGTTA not tested Acoerulea195_1868 REXdb_ID11799 Ty3/gypsy_CL068 (14) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_1869 REXdb_ID7952 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_187_rc REXdb_ID7922 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1875 REXdb_ID4849 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Acoerulea195_1884_rc REXdb_ID13054 Ty3/gypsy_CL199 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Acoerulea195_1885 REXdb_ID8019 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_1886_rc REXdb_ID6753 Ty3/gypsy_CL367 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGTCG (tRNA-Asp) - not tested Acoerulea195_1888_rc REXdb_ID7955 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1889_rc REXdb_ID8003 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1890 REXdb_ID7855 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1891 REXdb_ID7871 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1892_rc REXdb_ID8501 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCAACTG (tRNA-?) - not tested Acoerulea195_1900 REXdb_ID8511 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1906 REXdb_ID3904 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_1908 REXdb_ID8603 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_191_rc REXdb_ID9316 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGAAGGGC (tRNA-Asn) - not tested Acoerulea195_1912 REXdb_ID8520 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1913 REXdb_ID8037 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGATTA (tRNA-?) - not tested Acoerulea195_1919 REXdb_ID6641 Ty3/gypsy_CL110 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila - + + + + - - - + - not tested not tested 5 - - not tested Acoerulea195_192_rc REXdb_ID8504 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1922 REXdb_ID8031 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTGATTG (tRNA-?) - not tested Acoerulea195_1923_rc REXdb_ID7895 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1924 REXdb_ID8014 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_1930_rc REXdb_ID7 Ty1/copia_CL239 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAAG (tRNA-?) - not tested Acoerulea195_1932_rc REXdb_ID7898 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1934 REXdb_ID8600 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - + - - 4 TGGCACCGACTG (tRNA-Lys) - not tested Acoerulea195_1938_rc REXdb_ID3905 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_1946 REXdb_ID7723 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1949 REXdb_ID7980 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1950_rc REXdb_ID8477 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1952 REXdb_ID4850 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAAAGC (tRNA-?) - not tested Acoerulea195_1953_rc REXdb_ID8030 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1955_rc REXdb_ID1790 Ty1/copia_CL148 (6) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Acoerulea195_1958_rc REXdb_ID8483 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_1961_rc REXdb_ID9327 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 4 - - not tested Acoerulea195_1962_rc REXdb_ID7733 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1963_rc REXdb_ID7992 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1965_rc REXdb_ID7700 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1971 REXdb_ID7641 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1972_rc REXdb_ID3017 Ty1/copia_CL094 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAAGTTTT (tRNA-Met) - not tested Acoerulea195_1977_rc REXdb_ID13400 Ty3/gypsy_CL200 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Acoerulea195_1980_rc REXdb_ID3906 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_1983_rc REXdb_ID7982 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 - - not tested Acoerulea195_1986_rc REXdb_ID13053 Ty3/gypsy_CL199 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Acoerulea195_1987_rc REXdb_ID11793 Ty3/gypsy_CL068 (14) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAAAGCG (tRNA-Met) - not tested Acoerulea195_1989_rc REXdb_ID7764 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_1990_rc REXdb_ID3907 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_1998 REXdb_ID3908 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2 REXdb_ID12908 Ty3/gypsy_CL072 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_200 REXdb_ID4851 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_2004_rc REXdb_ID3909 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2005_rc REXdb_ID9333 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAAAGGAGGGCTTGAAC (tRNA-Asn) - not tested Acoerulea195_2011 REXdb_ID9317 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGAGAAGAAAG (tRNA-Ser) - not tested Acoerulea195_2012 REXdb_ID3018 Ty1/copia_CL442 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_2014_rc REXdb_ID7785 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2017 REXdb_ID11794 Ty3/gypsy_CL068 (14) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_2022 REXdb_ID7875 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 4 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2023_rc REXdb_ID7812 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2030_rc REXdb_ID7713 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2036 REXdb_ID3019 Ty1/copia_CL445 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_2047_rc REXdb_ID9344 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGGAGGGCTTGAA (tRNA-Asn) - not tested Acoerulea195_2055_rc REXdb_ID4852 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTAACAGAGC (tRNA-Met) - not tested Acoerulea195_2056_rc REXdb_ID4853 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork - + + + + - - - - - not tested not tested 4 TGGGTTATAAAT (tRNA-?) - not tested Acoerulea195_2058 REXdb_ID8589 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 4 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_206_rc REXdb_ID8 Ty1/copia_CL068 (13) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGAC (tRNA-Met) - not tested Acoerulea195_2060 REXdb_ID4854 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Acoerulea195_2061_rc REXdb_ID7848 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2062_rc REXdb_ID7797 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2069 REXdb_ID9719 Ty3/gypsy_CL201 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_2072_rc REXdb_ID4855 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Acoerulea195_2075 REXdb_ID4856 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGCCT (tRNA-Met) - not tested Acoerulea195_2077_rc REXdb_ID9 Ty1/copia_CL068 (13) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGTAG (tRNA-?) - not tested Acoerulea195_2082_rc REXdb_ID7863 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2088 REXdb_ID3910 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_209 REXdb_ID7724 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2090 REXdb_ID7981 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCCGACTAA (tRNA-Lys) - not tested Acoerulea195_2092_rc REXdb_ID4857 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_2096_rc REXdb_ID7923 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2097_rc REXdb_ID7734 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCACCGACTG (tRNA-Lys) - not tested Acoerulea195_2099_rc REXdb_ID7685 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_210 REXdb_ID7742 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2101 REXdb_ID7888 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2106_rc REXdb_ID11801 Ty3/gypsy_CL068 (14) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_2107 REXdb_ID4622 Ty1/copia_CL085 (10) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAGACATAA not tested Acoerulea195_2110_rc REXdb_ID7950 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTAA (tRNA-Lys) - not tested Acoerulea195_2115 REXdb_ID4858 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Acoerulea195_2117_rc REXdb_ID7686 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2119 REXdb_ID10 Ty1/copia_CL068 (13) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGAC (tRNA-Met) - not tested Acoerulea195_212_rc REXdb_ID4861 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_2125 REXdb_ID4859 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_2126_rc REXdb_ID4860 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_2133 REXdb_ID3911 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2140 REXdb_ID7687 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2141 REXdb_ID8576 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2143_rc REXdb_ID8588 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGTCGACTG (tRNA-Asn) - not tested Acoerulea195_2144 REXdb_ID9303 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGGAGGGC (tRNA-Asn) - not tested Acoerulea195_2148_rc REXdb_ID8582 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCTGGAGTCA (tRNA-His) - not tested Acoerulea195_2150 REXdb_ID8595 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - - - - 5 TGGCGTCGACTG (tRNA-Asn) - not tested Acoerulea195_2152 REXdb_ID4862 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Acoerulea195_2153_rc REXdb_ID3912 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_216_rc REXdb_ID8587 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 - - not tested Acoerulea195_2160_rc REXdb_ID4863 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_2165 REXdb_ID8515 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTAA (tRNA-Lys) - not tested Acoerulea195_2166_rc REXdb_ID11867 Ty3/gypsy_CL133 (6) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_2167_rc REXdb_ID7880 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_217 REXdb_ID3020 Ty1/copia_CL317 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCACAGCCAGGTT (tRNA-Met) - not tested Acoerulea195_2175 REXdb_ID7674 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2177 REXdb_ID7765 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_218_rc REXdb_ID4864 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Acoerulea195_2180_rc REXdb_ID8594 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Acoerulea195_2182_rc REXdb_ID9315 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGGAGGGC (tRNA-Asn) - not tested Acoerulea195_2183 REXdb_ID1791 Ty1/copia_CL446 (2) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTATCTAGAG (tRNA-?) - not tested Acoerulea195_2186 REXdb_ID7959 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_2189 REXdb_ID8580 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_219 REXdb_ID7983 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2190 REXdb_ID3913 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2192_rc REXdb_ID8566 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2193 REXdb_ID13335 Ty3/gypsy_CL151 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Acoerulea195_2196 REXdb_ID9312 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGGAGGGC (tRNA-Asn) - not tested Acoerulea195_2202_rc REXdb_ID7780 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2206 REXdb_ID7786 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2208 REXdb_ID7656 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2213_rc REXdb_ID12297 Ty3/gypsy_CL073 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAGAGCTAGGTTTCGA (tRNA-Met) - not tested Acoerulea195_2214 REXdb_ID8563 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2215_rc REXdb_ID3914 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_222_rc REXdb_ID13403 Ty3/gypsy_CL202 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTAGCAGATA (tRNA-Val) - not tested Acoerulea195_2224 REXdb_ID7864 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2229 REXdb_ID8505 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2231_rc REXdb_ID9718 Ty3/gypsy_CL198 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCTACAAG (tRNA-?) - not tested Acoerulea195_2232 REXdb_ID7956 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_2235 REXdb_ID3915 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2240 REXdb_ID7813 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2245_rc REXdb_ID7781 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2249_rc REXdb_ID4865 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_225_rc REXdb_ID3917 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2250_rc REXdb_ID3916 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2253_rc REXdb_ID8000 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2254_rc REXdb_ID12289 Ty3/gypsy_CL073 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAAAGCTAAGTTTCG (tRNA-Met) - not tested Acoerulea195_2256 REXdb_ID6645 Ty3/gypsy_CL110 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila - + + + + - - - + - not tested not tested 5 - - not tested Acoerulea195_2262 REXdb_ID8573 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_227 REXdb_ID8592 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCTGGAGTCA (tRNA-His) - not tested Acoerulea195_2272 REXdb_ID8518 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2279 REXdb_ID7814 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_228_rc REXdb_ID4866 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTT (tRNA-Met) - not tested Acoerulea195_2280 REXdb_ID7892 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCTACTG (tRNA-?) - not tested Acoerulea195_2282_rc REXdb_ID4623 Ty1/copia_CL085 (10) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAGACATAA not tested Acoerulea195_2283_rc REXdb_ID3918 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2288_rc REXdb_ID8023 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCACCGACTA (tRNA-?) - not tested Acoerulea195_229_rc REXdb_ID7900 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2294 REXdb_ID4867 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAAGCCAA (tRNA-Met) - not tested Acoerulea195_2299 REXdb_ID8543 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2308_rc REXdb_ID7745 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_231 REXdb_ID8585 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2315_rc REXdb_ID7960 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2316_rc REXdb_ID7924 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGATTG (tRNA-Lys) - not tested Acoerulea195_2322_rc REXdb_ID7984 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTAA (tRNA-Lys) - not tested Acoerulea195_2323_rc REXdb_ID8532 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTA (tRNA-?) - not tested Acoerulea195_2324_rc REXdb_ID7632 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2331_rc REXdb_ID13401 Ty3/gypsy_CL200 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAAAGCA (tRNA-Ile) - not tested Acoerulea195_2333 REXdb_ID3919 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2336 REXdb_ID7688 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2337_rc REXdb_ID7881 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGAGGGGA (tRNA-Lys) - not tested Acoerulea195_2338 REXdb_ID4868 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Acoerulea195_2341_rc REXdb_ID7689 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2342_rc REXdb_ID7755 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2345 REXdb_ID3920 Ty1/copia_CL238 (4) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Acoerulea195_2348 REXdb_ID7953 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2349 REXdb_ID4869 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Acoerulea195_2354 REXdb_ID7714 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2355_rc REXdb_ID7822 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2359 REXdb_ID4870 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Acoerulea195_236 REXdb_ID3921 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCC (tRNA-?) - not tested Acoerulea195_2364 REXdb_ID11 Ty1/copia_CL241 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGACT (tRNA-?) - not tested Acoerulea195_2366_rc REXdb_ID7986 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGTCGACTGT (tRNA-Asn) - not tested Acoerulea195_2371_rc REXdb_ID7657 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2376_rc REXdb_ID7954 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGTCGACTG (tRNA-Asn) - not tested Acoerulea195_2380 REXdb_ID7627 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGAGGGGA (tRNA-Lys) - not tested Acoerulea195_2382 REXdb_ID3922 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_239 REXdb_ID2696 Ty1/copia_CL084 (10) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGTAG (tRNA-?) - not tested Acoerulea195_2395 REXdb_ID11800 Ty3/gypsy_CL068 (14) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_2397 REXdb_ID7804 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2398 REXdb_ID7725 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_240 REXdb_ID7629 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2403 REXdb_ID7791 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_2404 REXdb_ID7808 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2405_rc REXdb_ID8509 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2407_rc REXdb_ID9720 Ty3/gypsy_CL201 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_241 REXdb_ID7658 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTAAGGGGA (tRNA-Lys) - not tested Acoerulea195_2411_rc REXdb_ID7828 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2414 REXdb_ID7841 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2416_rc REXdb_ID4871 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_2419 REXdb_ID8521 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_242 REXdb_ID3923 Ty1/copia_CL238 (4) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Acoerulea195_2420_rc REXdb_ID8555 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2421_rc REXdb_ID7842 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2423 REXdb_ID7642 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2427 REXdb_ID3924 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCA (tRNA-?) - not tested Acoerulea195_2428_rc REXdb_ID7904 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2429_rc REXdb_ID8519 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2434 REXdb_ID7996 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 4 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_2435 REXdb_ID8006 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2439 REXdb_ID4872 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGCCT (tRNA-Met) - not tested Acoerulea195_2440_rc REXdb_ID7876 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTA (tRNA-Lys) - not tested Acoerulea195_2441 REXdb_ID8503 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2442 REXdb_ID8015 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_2443_rc REXdb_ID7701 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2445 REXdb_ID7901 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_245_rc REXdb_ID3926 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2453 REXdb_ID3925 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2456 REXdb_ID3021 Ty1/copia_CL094 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAAGTTTT (tRNA-Met) - not tested Acoerulea195_2459 REXdb_ID7702 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2460_rc REXdb_ID1792 Ty1/copia_CL148 (6) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Acoerulea195_2469 REXdb_ID4873 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_2471 REXdb_ID4874 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_2473 REXdb_ID4875 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Acoerulea195_2477 REXdb_ID3022 Ty1/copia_CL317 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCACAGCCAGGTT (tRNA-Met) - not tested Acoerulea195_2478 REXdb_ID7659 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2487_rc REXdb_ID7932 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2494_rc REXdb_ID3927 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2495_rc REXdb_ID3928 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 4 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2497 REXdb_ID9738 Ty3/gypsy_CL260 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCACCCACCGTGGGGCT (tRNA-Lys) - not tested Acoerulea195_2499 REXdb_ID3929 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_25_rc REXdb_ID8551 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2512 REXdb_ID9305 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAAAGGAGGGCTTGAAC (tRNA-Asn) - not tested Acoerulea195_2521_rc REXdb_ID8016 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_2524 REXdb_ID7833 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2525 REXdb_ID7644 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2527_rc REXdb_ID8496 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_253_rc REXdb_ID6012 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTGCCGGGGA (tRNA-Asp) - not tested Acoerulea195_2531_rc REXdb_ID13068 Ty3/gypsy_CL259 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Acoerulea195_2533 REXdb_ID7902 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2534_rc REXdb_ID7961 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_2539 REXdb_ID7769 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - + not tested not tested 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_254_rc REXdb_ID7882 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2546 REXdb_ID8571 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_255 REXdb_ID8001 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2561_rc REXdb_ID4876 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Acoerulea195_2562_rc REXdb_ID3930 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2567_rc REXdb_ID8510 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2568_rc REXdb_ID7675 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2569 REXdb_ID7823 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_257 REXdb_ID7893 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_2570 REXdb_ID11797 Ty3/gypsy_CL068 (14) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAAAAG (tRNA-?) - not tested Acoerulea195_2571_rc REXdb_ID11868 Ty3/gypsy_CL133 (6) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_2573_rc REXdb_ID7787 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2575_rc REXdb_ID8025 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2579 REXdb_ID7703 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2591_rc REXdb_ID8042 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_2593_rc REXdb_ID3931 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_26_rc REXdb_ID7691 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2614_rc REXdb_ID9313 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCTAGAAGGAGGGC (tRNA-Asn) - not tested Acoerulea195_2619_rc REXdb_ID8583 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2625 REXdb_ID7766 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2626 REXdb_ID7914 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2629 REXdb_ID7896 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2634_rc REXdb_ID4877 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_2639_rc REXdb_ID7865 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2640_rc REXdb_ID3932 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2641_rc REXdb_ID8036 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_2645_rc REXdb_ID3023 Ty1/copia_CL094 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAAGTTTT (tRNA-Met) - not tested Acoerulea195_2647_rc REXdb_ID7987 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2648_rc REXdb_ID8470 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_265 REXdb_ID3933 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2654_rc REXdb_ID7782 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2658 REXdb_ID3934 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2659_rc REXdb_ID4878 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 - - not tested Acoerulea195_266 REXdb_ID8494 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACCGA (tRNA-Lys) - not tested Acoerulea195_2663_rc REXdb_ID3935 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2666_rc REXdb_ID8032 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_2667_rc REXdb_ID3024 Ty1/copia_CL242 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Acoerulea195_2669_rc REXdb_ID3025 Ty1/copia_CL242 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Acoerulea195_2674 REXdb_ID3936 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2678 REXdb_ID8028 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCACCGACTGT (tRNA-Lys) - not tested Acoerulea195_2684_rc REXdb_ID3937 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2686_rc REXdb_ID8524 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2688 REXdb_ID3938 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2694_rc REXdb_ID8497 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2697_rc REXdb_ID7849 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGAGGGGA (tRNA-Lys) - not tested Acoerulea195_2698_rc REXdb_ID7690 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2701_rc REXdb_ID8597 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCTGGAGTCA (tRNA-His) - not tested Acoerulea195_2715 REXdb_ID3026 Ty1/copia_CL243 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGCGC (tRNA-?) - not tested Acoerulea195_2716 REXdb_ID3939 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 4 - - not tested Acoerulea195_2718_rc REXdb_ID3940 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_272_rc REXdb_ID3029 Ty1/copia_CL243 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAAGGTTT (tRNA-Met) - not tested Acoerulea195_2720_rc REXdb_ID3941 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2721_rc REXdb_ID7834 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2722 REXdb_ID3027 Ty1/copia_CL447 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTAGGTT (tRNA-Met) - not tested Acoerulea195_2724 REXdb_ID12287 Ty3/gypsy_CL073 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAAAGCTAAGTTTCG (tRNA-Met) - not tested Acoerulea195_2725_rc REXdb_ID3942 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2726_rc REXdb_ID3028 Ty1/copia_CL094 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAAGTTTT (tRNA-Met) - not tested Acoerulea195_2728_rc REXdb_ID2697 Ty1/copia_CL084 (10) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGTAG (tRNA-?) - not tested Acoerulea195_2730 REXdb_ID8556 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2733 REXdb_ID11795 Ty3/gypsy_CL068 (14) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_2734 REXdb_ID7974 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_2735 REXdb_ID7929 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2736 REXdb_ID12294 Ty3/gypsy_CL073 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAAAGCAAGGTTTCGA (tRNA-Ile) - not tested Acoerulea195_2738_rc REXdb_ID4879 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 - - not tested Acoerulea195_2739_rc REXdb_ID7829 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2740_rc REXdb_ID8029 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2745_rc REXdb_ID3943 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2750 REXdb_ID3944 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2753 REXdb_ID3945 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2755_rc REXdb_ID8537 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2759_rc REXdb_ID4880 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_2760 REXdb_ID4881 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAAAG (tRNA-?) - not tested Acoerulea195_2772 REXdb_ID11802 Ty3/gypsy_CL068 (14) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAAAAC (tRNA-Met) - not tested Acoerulea195_2775_rc REXdb_ID3946 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAATCG (tRNA-?) - not tested Acoerulea195_2776_rc REXdb_ID9306 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGGAGGGC (tRNA-Asn) - not tested Acoerulea195_2779 REXdb_ID13402 Ty3/gypsy_CL200 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Acoerulea195_2782 REXdb_ID7770 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2794_rc REXdb_ID7660 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2797_rc REXdb_ID7936 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGAGGGGA (tRNA-Lys) - not tested Acoerulea195_2803_rc REXdb_ID3947 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2811_rc REXdb_ID7704 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2816_rc REXdb_ID8598 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2819 REXdb_ID7883 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_282_rc REXdb_ID7676 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2830_rc REXdb_ID3948 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2834 REXdb_ID7978 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_2838 REXdb_ID9308 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGGAGGGCTTG (tRNA-Asn) - not tested Acoerulea195_2839_rc REXdb_ID7726 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2841_rc REXdb_ID8552 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2842_rc REXdb_ID7824 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2847_rc REXdb_ID3949 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2850_rc REXdb_ID8013 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_2862 REXdb_ID3950 Ty1/copia_CL238 (4) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAAAGCCTAGTT (tRNA-Met) - not tested Acoerulea195_2865_rc REXdb_ID7856 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_287_rc REXdb_ID12907 Ty3/gypsy_CL072 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_2871 REXdb_ID7758 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2874 REXdb_ID8559 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2876 REXdb_ID3951 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2879_rc REXdb_ID7997 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_288 REXdb_ID4882 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Acoerulea195_2880 REXdb_ID3952 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_2884 REXdb_ID7907 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - - not tested not tested 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_2886_rc REXdb_ID3953 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2892 REXdb_ID9351 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGGGCTAGAAG (tRNA-Asn) - not tested Acoerulea195_2894_rc REXdb_ID9309 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGGAGGGCT (tRNA-Asn) - not tested Acoerulea195_2899 REXdb_ID8564 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2901_rc REXdb_ID7638 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2902 REXdb_ID11803 Ty3/gypsy_CL068 (14) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_2905 REXdb_ID7735 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2906 REXdb_ID7815 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2909_rc REXdb_ID7816 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_291_rc REXdb_ID8596 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2912_rc REXdb_ID8488 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2913 REXdb_ID12916 Ty3/gypsy_CL072 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_2915 REXdb_ID3030 Ty1/copia_CL447 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCCGAGC (tRNA-?) - not tested Acoerulea195_2919_rc REXdb_ID7933 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_292_rc REXdb_ID9717 Ty3/gypsy_CL198 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - - - - 5 TGGCACTAGAAGGAGGGC (tRNA-Asn) - not tested Acoerulea195_2921 REXdb_ID8525 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2922 REXdb_ID8491 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_2923 REXdb_ID7925 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2925 REXdb_ID8574 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2926_rc REXdb_ID7715 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2929_rc REXdb_ID12 Ty1/copia_CL239 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGG (tRNA-Met) - not tested Acoerulea195_2931_rc REXdb_ID7798 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTAAGGGGA (tRNA-Lys) - not tested Acoerulea195_2935_rc REXdb_ID7788 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2938 REXdb_ID4883 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Acoerulea195_294 REXdb_ID8484 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_2943_rc REXdb_ID3954 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2965 REXdb_ID7645 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2966_rc REXdb_ID9345 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGAAGGGCT (tRNA-Asn) - not tested Acoerulea195_2967 REXdb_ID7850 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGTCGACTGT (tRNA-Asn) - not tested Acoerulea195_2968 REXdb_ID8492 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_297_rc REXdb_ID7630 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTAAGGGGA (tRNA-Lys) - not tested Acoerulea195_2970 REXdb_ID7946 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - + not tested not tested 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2973 REXdb_ID7746 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTG (tRNA-Lys) - not tested Acoerulea195_2976_rc REXdb_ID13585 Ty3/gypsy_CL368 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_298_rc REXdb_ID13405 Ty3/gypsy_CL202 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTAGCAGATA (tRNA-Val) - not tested Acoerulea195_2984 REXdb_ID7843 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2985_rc REXdb_ID7805 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2989_rc REXdb_ID7760 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_299 REXdb_ID9349 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGGAGGGC (tRNA-Asn) - not tested Acoerulea195_2992 REXdb_ID7937 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_2994_rc REXdb_ID3955 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_2995_rc REXdb_ID4884 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAAGCC (tRNA-Met) - not tested Acoerulea195_2996 REXdb_ID9339 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGGAGGGC (tRNA-Asn) - not tested Acoerulea195_301_rc REXdb_ID2698 Ty1/copia_CL084 (10) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_3011_rc REXdb_ID7643 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3012_rc REXdb_ID3956 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_3017 REXdb_ID6640 Ty3/gypsy_CL110 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 4 - - not tested Acoerulea195_3019_rc REXdb_ID3957 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_3022 REXdb_ID4885 Ty1/copia_CL240 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 4 TGGTATCAGAGCCG (tRNA-Met) - not tested Acoerulea195_3024 REXdb_ID4886 Ty1/copia_CL240 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_3027 REXdb_ID4887 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCCGAGC (tRNA-?) - not tested Acoerulea195_3028 REXdb_ID1820 Ty1/copia_CL448 (2) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTC (tRNA-Met) - not tested Acoerulea195_3032 REXdb_ID7894 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3035 REXdb_ID8516 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_3039 REXdb_ID8567 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_304 REXdb_ID4624 Ty1/copia_CL085 (10) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAGACATAA not tested Acoerulea195_3041 REXdb_ID3958 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_3044 REXdb_ID8506 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_3046 REXdb_ID7661 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3047_rc REXdb_ID7705 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3048 REXdb_ID3031 Ty1/copia_CL094 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAAGTTTT (tRNA-Met) - not tested Acoerulea195_3049_rc REXdb_ID13586 Ty3/gypsy_CL369 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Acoerulea195_3050_rc REXdb_ID12911 Ty3/gypsy_CL072 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_3051_rc REXdb_ID8533 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_3052 REXdb_ID4888 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_3057_rc REXdb_ID4889 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_306_rc REXdb_ID13 Ty1/copia_CL239 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGA (tRNA-Met) - not tested Acoerulea195_3061 REXdb_ID2699 Ty1/copia_CL084 (10) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATTAAGAG (tRNA-?) - not tested Acoerulea195_3066 REXdb_ID3959 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_3069 REXdb_ID9334 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAAAGGAGGGCTTGAAC (tRNA-Asn) - not tested Acoerulea195_307 REXdb_ID7817 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3071_rc REXdb_ID3960 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_3072_rc REXdb_ID7806 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3074 REXdb_ID9324 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGGAGGGCTTG (tRNA-Asn) - not tested Acoerulea195_3080_rc REXdb_ID7747 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3084 REXdb_ID7965 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_3087 REXdb_ID8581 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_3091_rc REXdb_ID7857 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3099 REXdb_ID8008 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_310_rc REXdb_ID7951 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTGACTG (tRNA-?) - not tested Acoerulea195_3104 REXdb_ID7749 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3107 REXdb_ID9346 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTTTTGCTACT (tRNA-His) - not tested Acoerulea195_3117 REXdb_ID4625 Ty1/copia_CL181 (5) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - TTAAGACAATATTAC not tested Acoerulea195_3118_rc REXdb_ID11798 Ty3/gypsy_CL068 (14) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_3119_rc REXdb_ID11955 Ty3/gypsy_CL370 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 6 TGGCATCAAAGC (tRNA-?) - not tested Acoerulea195_312 REXdb_ID4626 Ty1/copia_CL181 (5) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAGACAATATTA not tested Acoerulea195_3120_rc REXdb_ID4890 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_3122 REXdb_ID7651 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3125_rc REXdb_ID4891 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAAC (tRNA-Met) - not tested Acoerulea195_3126 REXdb_ID7633 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3127 REXdb_ID3961 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_3128_rc REXdb_ID7889 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3130 REXdb_ID8550 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGAGGGGA (tRNA-Lys) - not tested Acoerulea195_3133_rc REXdb_ID7646 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3135 REXdb_ID7884 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_314 REXdb_ID12286 Ty3/gypsy_CL073 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAAAGCTAAGTTTCG (tRNA-Met) - not tested Acoerulea195_3142 REXdb_ID9332 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGAAGGGCTTG (tRNA-Asn) - not tested Acoerulea195_3144 REXdb_ID7792 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_315_rc REXdb_ID9325 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - + not tested not tested 5 TGGCGCTAGAAGGAGGGC (tRNA-Asn) - not tested Acoerulea195_3153 REXdb_ID7706 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGAGGGGA (tRNA-Lys) - not tested Acoerulea195_3156_rc REXdb_ID7756 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3159_rc REXdb_ID8514 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_316 REXdb_ID9752 Ty3/gypsy_CL371 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_3160_rc REXdb_ID8040 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_3162_rc REXdb_ID3032 Ty1/copia_CL243 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGCGC (tRNA-?) - not tested Acoerulea195_3163_rc REXdb_ID8522 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_3166 REXdb_ID7662 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3169 REXdb_ID3962 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_3176_rc REXdb_ID7692 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3178 REXdb_ID7693 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3188_rc REXdb_ID4892 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_3201 REXdb_ID4627 Ty1/copia_CL443 (2) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 4 TGGTTTTATATA (tRNA-Gln) - not tested Acoerulea195_3204_rc REXdb_ID4893 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGCCT (tRNA-Met) - not tested Acoerulea195_3206_rc REXdb_ID8500 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_3208 REXdb_ID7938 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_3209_rc REXdb_ID3033 Ty1/copia_CL243 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAAGCAAGGTTTG (tRNA-Ile) - not tested Acoerulea195_3217_rc REXdb_ID8493 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_3226_rc REXdb_ID2700 Ty1/copia_CL084 (10) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_3228_rc REXdb_ID9318 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGAGACGAAGG (tRNA-Ala) - not tested Acoerulea195_3244_rc REXdb_ID7835 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3246_rc REXdb_ID7969 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3249 REXdb_ID8584 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_3252_rc REXdb_ID7767 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3253_rc REXdb_ID7663 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3255_rc REXdb_ID8486 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_326 REXdb_ID7872 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3262 REXdb_ID7962 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3269 REXdb_ID7877 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3278 REXdb_ID9352 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGAAGGGCT (tRNA-Asn) - not tested Acoerulea195_3279 REXdb_ID7727 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_328 REXdb_ID7926 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_3283 REXdb_ID7664 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3288 REXdb_ID7793 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_329 REXdb_ID7866 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3293 REXdb_ID3963 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_3297_rc REXdb_ID7878 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3298 REXdb_ID7707 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3302_rc REXdb_ID7818 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3304_rc REXdb_ID8038 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCACCGACTA (tRNA-?) - not tested Acoerulea195_3309_rc REXdb_ID3964 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 4 - - not tested Acoerulea195_3310 REXdb_ID4894 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Acoerulea195_3319 REXdb_ID7930 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTGACTG (tRNA-?) - not tested Acoerulea195_3330_rc REXdb_ID1821 Ty1/copia_CL448 (2) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTC (tRNA-Met) - not tested Acoerulea195_3332 REXdb_ID13082 Ty3/gypsy_CL372 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Acoerulea195_3335_rc REXdb_ID4628 Ty1/copia_CL085 (10) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAGACATAATT not tested Acoerulea195_3339 REXdb_ID7988 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_3343_rc REXdb_ID7621 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3346 REXdb_ID7665 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3347_rc REXdb_ID3965 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_3355 REXdb_ID9331 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGGAGGGCTTG (tRNA-Asn) - not tested Acoerulea195_336_rc REXdb_ID3034 Ty1/copia_CL317 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGACC (tRNA-Met) - not tested Acoerulea195_3361 REXdb_ID3966 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_3362_rc REXdb_ID3967 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_3381_rc REXdb_ID7908 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3389 REXdb_ID4895 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGGGC (tRNA-?) - not tested Acoerulea195_339_rc REXdb_ID7666 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3392 REXdb_ID7708 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_3397_rc REXdb_ID3968 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - + - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_3407 REXdb_ID8526 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_342_rc REXdb_ID8546 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_351_rc REXdb_ID11796 Ty3/gypsy_CL068 (14) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_354 REXdb_ID7736 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGTCGACTG (tRNA-Asn) - not tested Acoerulea195_357 REXdb_ID9307 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGAAGGGC (tRNA-Asn) - not tested Acoerulea195_358 REXdb_ID7915 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_359_rc REXdb_ID9338 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGGAGGGCTTGA (tRNA-Asn) - not tested Acoerulea195_36_rc REXdb_ID7809 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_360_rc REXdb_ID7799 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGTCGACTG (tRNA-Asn) - not tested Acoerulea195_361_rc REXdb_ID4896 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Acoerulea195_363 REXdb_ID8538 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_364_rc REXdb_ID6644 Ty3/gypsy_CL110 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCG (tRNA-Asp) - not tested Acoerulea195_368 REXdb_ID7728 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_37 REXdb_ID7743 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGAGGGGA (tRNA-Lys) - not tested Acoerulea195_370 REXdb_ID8541 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_371 REXdb_ID8475 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_374_rc REXdb_ID7970 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_378_rc REXdb_ID7729 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_381 REXdb_ID7941 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCAACTG (tRNA-?) - not tested Acoerulea195_383 REXdb_ID4897 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Acoerulea195_384 REXdb_ID12910 Ty3/gypsy_CL072 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_392 REXdb_ID8569 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_394_rc REXdb_ID4898 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Acoerulea195_399 REXdb_ID7945 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_400_rc REXdb_ID14 Ty1/copia_CL449 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCA (tRNA-Ile) - not tested Acoerulea195_405 REXdb_ID7694 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_406_rc REXdb_ID7916 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_411 REXdb_ID7716 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_412_rc REXdb_ID3969 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_414_rc REXdb_ID7783 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_419_rc REXdb_ID4899 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Acoerulea195_423 REXdb_ID7730 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_43 REXdb_ID9319 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAAAGGAGGGCTTGAAC (tRNA-Asn) - not tested Acoerulea195_430_rc REXdb_ID8489 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_432_rc REXdb_ID9310 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGAAGGGT (tRNA-Asn) - not tested Acoerulea195_438 REXdb_ID7748 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_44_rc REXdb_ID7810 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_443 REXdb_ID4900 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Acoerulea195_448_rc REXdb_ID7851 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_449 REXdb_ID9350 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGAAGGGCT (tRNA-Asn) - not tested Acoerulea195_456_rc REXdb_ID7667 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCAACTG (tRNA-?) - not tested Acoerulea195_46_rc REXdb_ID3035 Ty1/copia_CL242 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Acoerulea195_466_rc REXdb_ID7744 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_47 REXdb_ID15 Ty1/copia_CL068 (13) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGTAG (tRNA-?) - not tested Acoerulea195_472 REXdb_ID7628 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_474_rc REXdb_ID8004 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTAA (tRNA-Lys) - not tested Acoerulea195_475_rc REXdb_ID7717 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_476 REXdb_ID7718 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGAGGGGA (tRNA-Lys) - not tested Acoerulea195_477 REXdb_ID16 Ty1/copia_CL241 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGACT (tRNA-?) - not tested Acoerulea195_482_rc REXdb_ID7775 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_485 REXdb_ID7858 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCACCGACTG (tRNA-Lys) - not tested Acoerulea195_488 REXdb_ID7737 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTAAGGGGA (tRNA-Lys) - not tested Acoerulea195_49 REXdb_ID7957 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_495_rc REXdb_ID7754 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_498 REXdb_ID7652 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGAGGGGA (tRNA-Lys) - not tested Acoerulea195_5_rc REXdb_ID4903 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Acoerulea195_503 REXdb_ID3970 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_506_rc REXdb_ID7830 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_509_rc REXdb_ID7668 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_510 REXdb_ID13404 Ty3/gypsy_CL202 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTAGCAGATA (tRNA-Val) - not tested Acoerulea195_513_rc REXdb_ID4901 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 4 - - not tested Acoerulea195_515_rc REXdb_ID17 Ty1/copia_CL068 (13) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGAC (tRNA-Met) - not tested Acoerulea195_518_rc REXdb_ID3971 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_52 REXdb_ID4902 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGCCT (tRNA-Met) - not tested Acoerulea195_520 REXdb_ID3972 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_521_rc REXdb_ID7947 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - + not tested not tested 5 TGGCGCCGACTGAGGGGA (tRNA-Lys) - not tested Acoerulea195_522_rc REXdb_ID3973 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_525 REXdb_ID7789 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGAGGGGA (tRNA-Lys) - not tested Acoerulea195_528 REXdb_ID12917 Ty3/gypsy_CL072 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_529_rc REXdb_ID4629 Ty1/copia_CL069 (13) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 TGGAGAAATCAG (tRNA-Ala) CTTAAGGTGTTATT not tested Acoerulea195_53_rc REXdb_ID7927 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_534 REXdb_ID3974 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_537_rc REXdb_ID8024 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGTGGGAATCGA (tRNA-Lys) - not tested Acoerulea195_541_rc REXdb_ID7890 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_543 REXdb_ID7819 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_545 REXdb_ID7971 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_546 REXdb_ID7993 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_550 REXdb_ID8033 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - not tested not tested - - 5 TGGCGCCGACTA (tRNA-Lys) - not tested Acoerulea195_553 REXdb_ID3975 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_554_rc REXdb_ID3976 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_556_rc REXdb_ID8599 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCATCGACTG (tRNA-?) - not tested Acoerulea195_557_rc REXdb_ID7942 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_559_rc REXdb_ID4630 Ty1/copia_CL085 (10) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAGACATA not tested Acoerulea195_560_rc REXdb_ID3977 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_561_rc REXdb_ID7695 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_567_rc REXdb_ID3978 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_569 REXdb_ID7624 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_57_rc REXdb_ID8544 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_575 REXdb_ID12290 Ty3/gypsy_CL073 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAAAGCTAAGTTTCG (tRNA-Met) - not tested Acoerulea195_58_rc REXdb_ID3979 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_582_rc REXdb_ID8022 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGACGACTG (tRNA-?) - not tested Acoerulea195_583_rc REXdb_ID9343 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAAAGGAGGGCTTGAAC (tRNA-Asn) - not tested Acoerulea195_585_rc REXdb_ID7885 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_586_rc REXdb_ID7919 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_587_rc REXdb_ID7972 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_59_rc REXdb_ID2701 Ty1/copia_CL084 (10) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_592 REXdb_ID13473 Ty3/gypsy_CL261 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAAAGCC (tRNA-Met) - not tested Acoerulea195_595 REXdb_ID7909 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_597 REXdb_ID8020 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_598 REXdb_ID12292 Ty3/gypsy_CL073 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAGAGCTAGGTTTCGA (tRNA-Met) - not tested Acoerulea195_602 REXdb_ID7917 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTGCCGACTG (tRNA-?) - not tested Acoerulea195_607_rc REXdb_ID8035 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTAA (tRNA-Lys) - not tested Acoerulea195_61 REXdb_ID12291 Ty3/gypsy_CL073 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAGAGCTAGGTTTCGA (tRNA-Met) - not tested Acoerulea195_611_rc REXdb_ID9330 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAAAGGAGGGCTTGAAC (tRNA-Asn) - not tested Acoerulea195_616_rc REXdb_ID3980 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_617_rc REXdb_ID7731 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_620 REXdb_ID4904 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Acoerulea195_621_rc REXdb_ID7800 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_622 REXdb_ID8005 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGAGGGGA (tRNA-Lys) - not tested Acoerulea195_624 REXdb_ID8545 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_638 REXdb_ID7750 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_641 REXdb_ID4905 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_642 REXdb_ID9300 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGAAGGGC (tRNA-Asn) - not tested Acoerulea195_645 REXdb_ID3981 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_648_rc REXdb_ID7794 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_653 REXdb_ID6646 Ty3/gypsy_CL110 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 - - not tested Acoerulea195_661 REXdb_ID8577 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_663_rc REXdb_ID13333 Ty3/gypsy_CL151 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAAAGCG (tRNA-Met) - not tested Acoerulea195_665 REXdb_ID7677 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_667_rc REXdb_ID4631 Ty1/copia_CL085 (10) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAGACATAA not tested Acoerulea195_669 REXdb_ID7669 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_67 REXdb_ID11870 Ty3/gypsy_CL133 (6) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_670_rc REXdb_ID12288 Ty3/gypsy_CL073 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAAAGCTAAGTTTCG (tRNA-Met) - not tested Acoerulea195_675_rc REXdb_ID7753 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_677_rc REXdb_ID7678 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_678_rc REXdb_ID1793 Ty1/copia_CL148 (6) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTATCACAGCCAGGTT (tRNA-Met) - not tested Acoerulea195_680_rc REXdb_ID4906 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Acoerulea195_684_rc REXdb_ID7852 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_686_rc REXdb_ID8557 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_687 REXdb_ID7939 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_688_rc REXdb_ID9326 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAAAGGAGGGCTTGAAC (tRNA-Asn) - not tested Acoerulea195_689_rc REXdb_ID1794 Ty1/copia_CL148 (6) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Acoerulea195_692_rc REXdb_ID3982 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_693_rc REXdb_ID18 Ty1/copia_CL241 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGACT (tRNA-?) - not tested Acoerulea195_696 REXdb_ID1795 Ty1/copia_CL148 (6) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Acoerulea195_699_rc REXdb_ID12293 Ty3/gypsy_CL073 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAAAGCTAAGTTTCG (tRNA-Met) - not tested Acoerulea195_7_rc REXdb_ID7697 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_701_rc REXdb_ID7670 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_707 REXdb_ID7709 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_71 REXdb_ID7836 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_715_rc REXdb_ID3036 Ty1/copia_CL094 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAAGCCAAGTTTT (tRNA-Met) - not tested Acoerulea195_716 REXdb_ID8498 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_720 REXdb_ID7679 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_722_rc REXdb_ID4907 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 - - not tested Acoerulea195_723 REXdb_ID4908 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Acoerulea195_725 REXdb_ID7680 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_729_rc REXdb_ID9721 Ty3/gypsy_CL201 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_734 REXdb_ID7837 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGTCGACTG (tRNA-Asn) - not tested Acoerulea195_736_rc REXdb_ID7934 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Acoerulea195_739_rc REXdb_ID7825 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCACCGACTG (tRNA-Lys) - not tested Acoerulea195_74_rc REXdb_ID3037 Ty1/copia_CL242 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Acoerulea195_742 REXdb_ID4909 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 4 - - not tested Acoerulea195_748 REXdb_ID8017 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_75 REXdb_ID4910 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_750 REXdb_ID3983 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_752 REXdb_ID7696 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_760 REXdb_ID7681 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTAAGGGGA (tRNA-Lys) - not tested Acoerulea195_761 REXdb_ID8007 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGTCGACTG (tRNA-Asn) - not tested Acoerulea195_764 REXdb_ID7903 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - not tested not tested - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_765 REXdb_ID7963 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_766 REXdb_ID7994 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_768_rc REXdb_ID3984 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_769_rc REXdb_ID7998 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_778_rc REXdb_ID3985 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_779_rc REXdb_ID3986 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_780 REXdb_ID8527 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_781_rc REXdb_ID9335 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGAAGGGCTTA (tRNA-Asn) - not tested Acoerulea195_782 REXdb_ID8547 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACAGA (tRNA-Ser) - not tested Acoerulea195_783_rc REXdb_ID7989 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_784_rc REXdb_ID4911 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Acoerulea195_794_rc REXdb_ID7751 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_795 REXdb_ID11871 Ty3/gypsy_CL133 (6) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_796 REXdb_ID7738 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_798 REXdb_ID3987 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 4 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_808 REXdb_ID4632 Ty1/copia_CL181 (5) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - - not tested Acoerulea195_81_rc REXdb_ID7964 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_812 REXdb_ID9348 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 4 TGGTGCTAGAAGAAGGGCTTGAA (tRNA-Lys) - not tested Acoerulea195_814 REXdb_ID8517 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_817 REXdb_ID7739 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_818_rc REXdb_ID19 Ty1/copia_CL068 (13) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Acoerulea195_819 REXdb_ID8010 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_82 REXdb_ID3988 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_824 REXdb_ID3989 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_830 REXdb_ID11792 Ty3/gypsy_CL068 (14) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_834 REXdb_ID8528 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_842 REXdb_ID7801 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_85_rc REXdb_ID12918 Ty3/gypsy_CL072 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_850_rc REXdb_ID8012 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_852_rc REXdb_ID7807 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_854 REXdb_ID4912 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATTAGAGC (tRNA-?) - not tested Acoerulea195_855_rc REXdb_ID7771 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_857_rc REXdb_ID9328 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGAAGGGC (tRNA-Asn) - not tested Acoerulea195_863 REXdb_ID8478 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_865 REXdb_ID4913 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_867_rc REXdb_ID4633 Ty1/copia_CL069 (13) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 TGGAGAAATCAG (tRNA-Ala) CTTAAGGTGTTATT not tested Acoerulea195_87 REXdb_ID7935 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_871_rc REXdb_ID3038 Ty1/copia_CL444 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_874_rc REXdb_ID4914 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_878 REXdb_ID4915 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_880_rc REXdb_ID4916 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_881 REXdb_ID12295 Ty3/gypsy_CL073 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAAAGCAAGGTTTCGA (tRNA-Ile) - not tested Acoerulea195_882_rc REXdb_ID4917 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_883_rc REXdb_ID8553 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_884 REXdb_ID20 Ty1/copia_CL241 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGACT (tRNA-?) - not tested Acoerulea195_892_rc REXdb_ID4634 Ty1/copia_CL085 (10) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAGACATAATTT not tested Acoerulea195_894_rc REXdb_ID7740 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTGACTG (tRNA-?) - not tested Acoerulea195_896_rc REXdb_ID7966 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGTCGACTG (tRNA-Asn) - not tested Acoerulea195_9 REXdb_ID7719 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_905 REXdb_ID8021 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_906_rc REXdb_ID8554 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_909_rc REXdb_ID7859 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_913_rc REXdb_ID7899 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_914_rc REXdb_ID8011 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_918 REXdb_ID7844 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_919_rc REXdb_ID8034 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTAT (tRNA-Lys) - not tested Acoerulea195_922_rc REXdb_ID3990 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_927_rc REXdb_ID3991 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Acoerulea195_93_rc REXdb_ID7853 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_931_rc REXdb_ID1796 Ty1/copia_CL446 (2) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTATCTAGAG (tRNA-?) - not tested Acoerulea195_935 REXdb_ID3992 Ty1/copia_CL005 (110) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Acoerulea195_936_rc REXdb_ID7977 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_94_rc REXdb_ID8485 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_942 REXdb_ID9301 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGGAGGGC (tRNA-Asn) - not tested Acoerulea195_945 REXdb_ID7768 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_946 REXdb_ID9302 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTGCTAGAAGGAGGGC (tRNA-Asn) - not tested Acoerulea195_949_rc REXdb_ID9341 Ty3/gypsy_CL028 (54) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGAAGGGC (tRNA-Asn) - not tested Acoerulea195_95_rc REXdb_ID8542 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_953 REXdb_ID4918 Ty1/copia_CL012 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Acoerulea195_954 REXdb_ID8009 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_955 REXdb_ID21 Ty1/copia_CL449 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Acoerulea195_956_rc REXdb_ID8523 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_958 REXdb_ID12915 Ty3/gypsy_CL072 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Acoerulea195_96 REXdb_ID8539 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_962 REXdb_ID4635 Ty1/copia_CL085 (10) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAGACATAA not tested Acoerulea195_964 REXdb_ID7920 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_967_rc REXdb_ID4919 Ty1/copia_CL018 (43) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_968_rc REXdb_ID7820 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_97 REXdb_ID8591 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 4 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_971 REXdb_ID8575 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCTGGAGTCA (tRNA-His) - not tested Acoerulea195_972 REXdb_ID7625 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_976_rc REXdb_ID7973 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_977 REXdb_ID7867 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_980 REXdb_ID11791 Ty3/gypsy_CL068 (14) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Acoerulea195_983_rc REXdb_ID7873 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGT (tRNA-Lys) - not tested Acoerulea195_986 REXdb_ID8534 Ty3/gypsy_CL015 (133) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGA (tRNA-Lys) - not tested Acoerulea195_987 REXdb_ID7647 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Acoerulea195_991_rc REXdb_ID7795 Ty3/gypsy_CL002 (423) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTG (tRNA-Lys) - not tested Ahalleri264_3_rc REXdb_ID22 Ty1/copia_CL450 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAGG (tRNA-Met) - not tested Ahalleri264_5_rc REXdb_ID13260 Ty3/gypsy_CL099 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ahalleri264_6_rc REXdb_ID3039 Ty1/copia_CL451 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Alyrata107_10 REXdb_ID23 Ty1/copia_CL149 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Alyrata107_100 REXdb_ID11681 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Alyrata107_1002_rc REXdb_ID8044 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_1003 REXdb_ID13474 Ty3/gypsy_CL262 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGGTGAAA (tRNA-Undet) - not tested Alyrata107_1004 REXdb_ID8252 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1005 REXdb_ID3993 Ty1/copia_CL061 (14) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Alyrata107_1006_rc REXdb_ID24 Ty1/copia_CL182 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Alyrata107_101_rc REXdb_ID8083 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1010_rc REXdb_ID8064 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGTA (tRNA-Lys) - not tested Alyrata107_1011 REXdb_ID1797 Ty1/copia_CL452 (2) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 4 TGGTATCAGAGCCA (tRNA-Met) - not tested Alyrata107_1013_rc REXdb_ID8707 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_1015_rc REXdb_ID2360 Ty1/copia_CL031 (26) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAT (tRNA-Ile) Alyrata107_1016 REXdb_ID8135 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1017_rc REXdb_ID3040 Ty1/copia_CL244 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 4 - - not tested Alyrata107_102_rc REXdb_ID8177 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_1022 REXdb_ID2361 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGA (tRNA-Ile) Alyrata107_1023 REXdb_ID25 Ty1/copia_CL032 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Alyrata107_1024 REXdb_ID8046 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1027_rc REXdb_ID11725 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGATTC (tRNA-Met) - not tested Alyrata107_1028 REXdb_ID8141 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1029_rc REXdb_ID26 Ty1/copia_CL032 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Alyrata107_103 REXdb_ID8153 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1033_rc REXdb_ID8128 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1034 REXdb_ID9542 Ty3/gypsy_CL056 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAGGAGGGGAT (tRNA-Lys) - not tested Alyrata107_1036 REXdb_ID8273 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 4 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1037_rc REXdb_ID8084 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1038 REXdb_ID8164 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 4 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1039 REXdb_ID8059 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1040_rc REXdb_ID9550 Ty3/gypsy_CL056 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAGGAGGGGAT (tRNA-Lys) - not tested Alyrata107_1041_rc REXdb_ID8105 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1042 REXdb_ID3041 Ty1/copia_CL451 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Alyrata107_1044_rc REXdb_ID2702 Ty1/copia_CL654 (1) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Alyrata107_1045 REXdb_ID8272 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1046_rc REXdb_ID2362 Ty1/copia_CL031 (26) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAT (tRNA-Ile) Alyrata107_1048 REXdb_ID4920 Ty1/copia_CL245 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Alyrata107_1049_rc REXdb_ID8154 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_105 REXdb_ID8159 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1052_rc REXdb_ID9561 Ty3/gypsy_CL057 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Alyrata107_1053_rc REXdb_ID8106 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1054_rc REXdb_ID9565 Ty3/gypsy_CL057 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGTCAGGTAGGGG (tRNA-Arg) - not tested Alyrata107_1057 REXdb_ID11685 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Alyrata107_1058_rc REXdb_ID11684 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Alyrata107_1059 REXdb_ID8246 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1062_rc REXdb_ID8094 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_1064_rc REXdb_ID9545 Ty3/gypsy_CL056 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAGGAGGGGAT (tRNA-Lys) - not tested Alyrata107_1066 REXdb_ID8275 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1068_rc REXdb_ID8078 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_107_rc REXdb_ID3042 Ty1/copia_CL244 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 4 - - not tested Alyrata107_1071_rc REXdb_ID8240 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_1072_rc REXdb_ID2363 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 4 - - CGTTATCAGCACGA (tRNA-Ile) Alyrata107_1073_rc REXdb_ID8721 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_1074 REXdb_ID8250 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - + - - 5 TGGCGCCGCCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_1075_rc REXdb_ID8248 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Alyrata107_1079_rc REXdb_ID8065 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_108_rc REXdb_ID8200 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1080 REXdb_ID8743 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_1082 REXdb_ID2364 Ty1/copia_CL031 (26) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 TGGAAAAAAATAT (tRNA-Ser) - CGTTATCAGCACGAT (tRNA-Ile) Alyrata107_1083_rc REXdb_ID8280 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1086 REXdb_ID8216 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1087_rc REXdb_ID3994 Ty1/copia_CL061 (14) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGA (tRNA-Met) - not tested Alyrata107_1088 REXdb_ID9566 Ty3/gypsy_CL057 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Alyrata107_1091_rc REXdb_ID8755 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1094 REXdb_ID8165 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1096_rc REXdb_ID12830 Ty3/gypsy_CL053 (20) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Alyrata107_1097_rc REXdb_ID4921 Ty1/copia_CL183 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTAC (tRNA-Met) - not tested Alyrata107_1098_rc REXdb_ID2365 Ty1/copia_CL031 (26) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - TGTTATCAGCACGAT (tRNA-Ile) Alyrata107_1099_rc REXdb_ID8066 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGGGAAAGAGAGG (tRNA-Ser) - not tested Alyrata107_11 REXdb_ID9569 Ty3/gypsy_CL057 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Alyrata107_1100_rc REXdb_ID2366 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Alyrata107_1102_rc REXdb_ID9555 Ty3/gypsy_CL056 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGGAGGGGTT (tRNA-Asn) - not tested Alyrata107_1103_rc REXdb_ID27 Ty1/copia_CL246 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Alyrata107_1106_rc REXdb_ID13352 Ty3/gypsy_CL164 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Alyrata107_1109 REXdb_ID2367 Ty1/copia_CL031 (26) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAT (tRNA-Ile) Alyrata107_1113 REXdb_ID8171 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTG (tRNA-Lys) - not tested Alyrata107_1118_rc REXdb_ID28 Ty1/copia_CL318 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Alyrata107_1120_rc REXdb_ID8178 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_1123_rc REXdb_ID8142 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1124_rc REXdb_ID9573 Ty3/gypsy_CL057 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Alyrata107_1130_rc REXdb_ID29 Ty1/copia_CL319 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Alyrata107_1131 REXdb_ID8148 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_1135 REXdb_ID8747 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_1137 REXdb_ID8060 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1139 REXdb_ID3043 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Alyrata107_1141_rc REXdb_ID8243 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGG (tRNA-Lys) - not tested Alyrata107_1142_rc REXdb_ID8149 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1143 REXdb_ID4636 Ty1/copia_CL247 (4) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTAAGACAGAATT not tested Alyrata107_1146 REXdb_ID4637 Ty1/copia_CL247 (4) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTAAGACAGAATTT not tested Alyrata107_1147 REXdb_ID3995 Ty1/copia_CL061 (14) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Alyrata107_1148_rc REXdb_ID3044 Ty1/copia_CL320 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Alyrata107_1149 REXdb_ID4638 Ty1/copia_CL107 (8) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAAGAGTATTT not tested Alyrata107_115_rc REXdb_ID8129 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_1150_rc REXdb_ID8067 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1151 REXdb_ID11872 Ty3/gypsy_CL134 (6) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGAC (tRNA-Met) - not tested Alyrata107_1152_rc REXdb_ID2368 Ty1/copia_CL031 (26) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - - Alyrata107_1154 REXdb_ID8708 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_1156 REXdb_ID8172 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1160_rc REXdb_ID8232 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_1164 REXdb_ID11804 Ty3/gypsy_CL087 (11) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Alyrata107_1166_rc REXdb_ID30 Ty1/copia_CL149 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Alyrata107_1167_rc REXdb_ID13353 Ty3/gypsy_CL164 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Alyrata107_1168 REXdb_ID8723 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1169 REXdb_ID8258 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 - - not tested Alyrata107_1170_rc REXdb_ID3996 Ty1/copia_CL061 (14) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Alyrata107_1171_rc REXdb_ID8255 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_118 REXdb_ID8763 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGTCGTCTGTGGG (tRNA-Lys) - not tested Alyrata107_1185 REXdb_ID11815 Ty3/gypsy_CL082 (12) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Alyrata107_1187 REXdb_ID8150 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1189_rc REXdb_ID8274 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1192_rc REXdb_ID9722 Ty3/gypsy_CL203 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCTAG (tRNA-Lys) - not tested Alyrata107_1194_rc REXdb_ID8085 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 4 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1195_rc REXdb_ID8182 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_12 REXdb_ID9551 Ty3/gypsy_CL056 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGGAGGGGTT (tRNA-Asn) - not tested Alyrata107_120 REXdb_ID8175 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1202_rc REXdb_ID5734 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAG (tRNA-Asp) - not tested Alyrata107_121 REXdb_ID8179 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGTA (tRNA-Lys) - not tested Alyrata107_1212 REXdb_ID9724 Ty3/gypsy_CL203 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCCACCGTGGGGC (tRNA-Lys) - not tested Alyrata107_1214_rc REXdb_ID8217 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + not tested not tested 5 TGGCGCCGCCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_1217 REXdb_ID8201 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1219_rc REXdb_ID8726 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_122_rc REXdb_ID3997 Ty1/copia_CL061 (14) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Alyrata107_1223_rc REXdb_ID8266 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_1226 REXdb_ID1822 Ty1/copia_CL248 (4) Class_I::LTR::Ty1/copia::Angela - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Alyrata107_1228_rc REXdb_ID8086 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_123 REXdb_ID8136 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_1230 REXdb_ID8107 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAATT (tRNA-Lys) - not tested Alyrata107_1233_rc REXdb_ID8130 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1239_rc REXdb_ID8219 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_124_rc REXdb_ID9564 Ty3/gypsy_CL057 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Alyrata107_1241_rc REXdb_ID8155 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1245_rc REXdb_ID8744 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_1248 REXdb_ID9567 Ty3/gypsy_CL057 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Alyrata107_1250_rc REXdb_ID2369 Ty1/copia_CL031 (26) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAT (tRNA-Ile) Alyrata107_1254_rc REXdb_ID8095 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1256 REXdb_ID2370 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 4 - - CGTTATCAGCACGA (tRNA-Ile) Alyrata107_1257 REXdb_ID8718 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_126_rc REXdb_ID2372 Ty1/copia_CL031 (26) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAT (tRNA-Ile) Alyrata107_1267_rc REXdb_ID2371 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Alyrata107_1268 REXdb_ID3045 Ty1/copia_CL062 (14) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Alyrata107_1269_rc REXdb_ID31 Ty1/copia_CL319 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Alyrata107_1276 REXdb_ID8051 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGTA (tRNA-Lys) - not tested Alyrata107_1277_rc REXdb_ID8183 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1278 REXdb_ID9572 Ty3/gypsy_CL057 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Alyrata107_1279_rc REXdb_ID32 Ty1/copia_CL450 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAGG (tRNA-Met) - not tested Alyrata107_128 REXdb_ID8214 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1280_rc REXdb_ID8238 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_1281_rc REXdb_ID5752 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCA (tRNA-Asp) - not tested Alyrata107_1283_rc REXdb_ID8262 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTTTG (tRNA-?) - not tested Alyrata107_1284_rc REXdb_ID2373 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Alyrata107_1288 REXdb_ID9554 Ty3/gypsy_CL056 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - + - - 5 TGGCGCTAGAGGAGGGGAT (tRNA-Lys) - not tested Alyrata107_1292 REXdb_ID11683 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Alyrata107_13_rc REXdb_ID3047 Ty1/copia_CL062 (14) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Alyrata107_130 REXdb_ID13355 Ty3/gypsy_CL164 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Alyrata107_1300_rc REXdb_ID8215 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1302 REXdb_ID11682 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Alyrata107_1305_rc REXdb_ID11496 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 4 - - not tested Alyrata107_132 REXdb_ID8207 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_134 REXdb_ID8096 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1346 REXdb_ID9556 Ty3/gypsy_CL056 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAGGAGGGGAT (tRNA-Lys) - not tested Alyrata107_1349_rc REXdb_ID33 Ty1/copia_CL032 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCG (tRNA-Met) - not tested Alyrata107_135_rc REXdb_ID4639 Ty1/copia_CL453 (2) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 TGGTTCCATTAC (tRNA-Glu) CTTGAGCGAAAAA not tested Alyrata107_1355 REXdb_ID34 Ty1/copia_CL032 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Alyrata107_1360 REXdb_ID5753 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCA (tRNA-Asp) - not tested Alyrata107_1368 REXdb_ID8137 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_137_rc REXdb_ID3046 Ty1/copia_CL108 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGTATTCGAT (tRNA-Met) - not tested Alyrata107_1376 REXdb_ID11729 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGATTC (tRNA-Met) - not tested Alyrata107_1377_rc REXdb_ID8108 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1379 REXdb_ID8118 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1380_rc REXdb_ID8151 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1383 REXdb_ID8087 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1386 REXdb_ID9563 Ty3/gypsy_CL057 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Alyrata107_1387 REXdb_ID8088 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_139_rc REXdb_ID8173 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1391_rc REXdb_ID8749 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGAGAT (tRNA-Lys) - not tested Alyrata107_1392_rc REXdb_ID8263 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1394_rc REXdb_ID8195 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_1396_rc REXdb_ID9553 Ty3/gypsy_CL056 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCTAGAAGGAGGGG (tRNA-Asn) - not tested Alyrata107_1398 REXdb_ID8225 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_14_rc REXdb_ID2374 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Alyrata107_1404 REXdb_ID8731 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_141_rc REXdb_ID8156 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCATCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_1410 REXdb_ID3048 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Alyrata107_1412_rc REXdb_ID35 Ty1/copia_CL149 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Alyrata107_1413_rc REXdb_ID3998 Ty1/copia_CL061 (14) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Alyrata107_1418_rc REXdb_ID4640 Ty1/copia_CL453 (2) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 TGGTTCCATTAC (tRNA-Glu) CTTGAGCGAAAAA not tested Alyrata107_1419 REXdb_ID36 Ty1/copia_CL032 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Alyrata107_142 REXdb_ID8719 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_1424_rc REXdb_ID3049 Ty1/copia_CL125 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Alyrata107_144 REXdb_ID8724 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_15_rc REXdb_ID3051 Ty1/copia_CL321 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Alyrata107_150 REXdb_ID3050 Ty1/copia_CL184 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Alyrata107_151 REXdb_ID8766 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_152_rc REXdb_ID4922 Ty1/copia_CL183 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Alyrata107_156 REXdb_ID8109 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_157_rc REXdb_ID4641 Ty1/copia_CL107 (8) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAAGAGTATTT not tested Alyrata107_158_rc REXdb_ID2375 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Alyrata107_160_rc REXdb_ID8079 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_165 REXdb_ID3052 Ty1/copia_CL322 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Alyrata107_170 REXdb_ID37 Ty1/copia_CL149 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Alyrata107_174_rc REXdb_ID12840 Ty3/gypsy_CL053 (20) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Alyrata107_175_rc REXdb_ID8190 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_18 REXdb_ID3999 Ty1/copia_CL061 (14) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Alyrata107_181 REXdb_ID8284 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_186 REXdb_ID5754 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGT (tRNA-Asn) - not tested Alyrata107_188_rc REXdb_ID8235 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_191_rc REXdb_ID8271 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_193_rc REXdb_ID8281 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGTCCCCTG (tRNA-Ser) - not tested Alyrata107_197_rc REXdb_ID5745 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCGTTGCCAT (tRNA-Asp) - not tested Alyrata107_198_rc REXdb_ID8138 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_20 REXdb_ID8143 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGTAT (tRNA-Lys) - not tested Alyrata107_201_rc REXdb_ID5806 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCA (tRNA-Asp) - not tested Alyrata107_203_rc REXdb_ID5750 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAG (tRNA-Asp) - not tested Alyrata107_207 REXdb_ID8285 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_21_rc REXdb_ID2376 Ty1/copia_CL031 (26) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAT (tRNA-Ile) Alyrata107_210_rc REXdb_ID8239 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_211 REXdb_ID8191 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_212 REXdb_ID8713 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_213_rc REXdb_ID8765 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_214_rc REXdb_ID9557 Ty3/gypsy_CL056 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAGGAGGGGAT (tRNA-Lys) - not tested Alyrata107_215_rc REXdb_ID8758 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGGGCCGTCTG (tRNA-?) - not tested Alyrata107_217 REXdb_ID8097 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_22 REXdb_ID4923 Ty1/copia_CL183 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTAGGTT (tRNA-Met) - not tested Alyrata107_222_rc REXdb_ID4642 Ty1/copia_CL107 (8) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAAGAGTATTT not tested Alyrata107_224_rc REXdb_ID8762 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - + not tested not tested 5 TGGCACCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_225_rc REXdb_ID11518 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Alyrata107_227 REXdb_ID8735 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_228_rc REXdb_ID9558 Ty3/gypsy_CL056 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGAGCTAGAAGGAGGGGTT (tRNA-Asn) - not tested Alyrata107_229_rc REXdb_ID8760 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_230 REXdb_ID8733 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_233_rc REXdb_ID8209 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_234_rc REXdb_ID2377 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Alyrata107_235_rc REXdb_ID8068 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_236_rc REXdb_ID8261 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_238_rc REXdb_ID8711 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_240_rc REXdb_ID8131 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTAG (tRNA-Lys) - not tested Alyrata107_242_rc REXdb_ID8069 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_248_rc REXdb_ID11899 Ty3/gypsy_CL165 (4) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 4 TGGTATCAGAGACG (tRNA-Leu) - not tested Alyrata107_25_rc REXdb_ID5847 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGACC (tRNA-Asp) - not tested Alyrata107_250_rc REXdb_ID8176 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_251_rc REXdb_ID4643 Ty1/copia_CL107 (8) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAAGAGTATTT not tested Alyrata107_252 REXdb_ID8236 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_253_rc REXdb_ID13587 Ty3/gypsy_CL152 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGGTGGAGAC (tRNA-Glu) - not tested Alyrata107_254 REXdb_ID8748 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_257_rc REXdb_ID4000 Ty1/copia_CL185 (5) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Alyrata107_258_rc REXdb_ID8052 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_260_rc REXdb_ID8184 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_262_rc REXdb_ID8251 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTA (tRNA-Ser) - not tested Alyrata107_263_rc REXdb_ID2378 Ty1/copia_CL031 (26) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAT (tRNA-Ile) Alyrata107_264_rc REXdb_ID11807 Ty3/gypsy_CL087 (11) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Alyrata107_266_rc REXdb_ID4644 Ty1/copia_CL107 (8) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAAGAGTATTT not tested Alyrata107_269 REXdb_ID8157 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_270 REXdb_ID12836 Ty3/gypsy_CL053 (20) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Alyrata107_276_rc REXdb_ID12848 Ty3/gypsy_CL053 (20) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Alyrata107_279_rc REXdb_ID2379 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Alyrata107_282_rc REXdb_ID5744 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCA (tRNA-Asp) - not tested Alyrata107_284_rc REXdb_ID8712 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_286_rc REXdb_ID2380 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Alyrata107_29 REXdb_ID5742 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCA (tRNA-Asp) - not tested Alyrata107_292 REXdb_ID8144 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTA (tRNA-Ser) - not tested Alyrata107_293 REXdb_ID8290 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - - - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_294 REXdb_ID8045 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_295 REXdb_ID8196 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_296 REXdb_ID8220 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_297_rc REXdb_ID8247 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_298_rc REXdb_ID9546 Ty3/gypsy_CL056 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGGAGGGGCTT (tRNA-Asn) - not tested Alyrata107_299 REXdb_ID8234 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_305 REXdb_ID8098 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_306_rc REXdb_ID8761 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_308_rc REXdb_ID8253 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTGCTTG (tRNA-?) - not tested Alyrata107_311 REXdb_ID2381 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Alyrata107_316_rc REXdb_ID2382 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGA (tRNA-Ile) Alyrata107_317_rc REXdb_ID8053 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_320_rc REXdb_ID2383 Ty1/copia_CL031 (26) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAT (tRNA-Ile) Alyrata107_321 REXdb_ID8205 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_323 REXdb_ID3053 Ty1/copia_CL320 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Alyrata107_324 REXdb_ID5853 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGACC (tRNA-Asp) - not tested Alyrata107_328_rc REXdb_ID38 Ty1/copia_CL323 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAGGTT (tRNA-Met) - not tested Alyrata107_329_rc REXdb_ID8197 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_33_rc REXdb_ID3054 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 6 - - not tested Alyrata107_332 REXdb_ID39 Ty1/copia_CL318 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Alyrata107_334_rc REXdb_ID9544 Ty3/gypsy_CL056 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - + - - 5 TGGCGCTAGAGGAGGGGAT (tRNA-Lys) - not tested Alyrata107_335 REXdb_ID2384 Ty1/copia_CL031 (26) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - TGTTATCAGCACGAT (tRNA-Ile) Alyrata107_343_rc REXdb_ID8208 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_344 REXdb_ID4645 Ty1/copia_CL247 (4) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - - not tested Alyrata107_345_rc REXdb_ID3055 Ty1/copia_CL321 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Alyrata107_349 REXdb_ID8145 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGGCTGTGGG (tRNA-Lys) - not tested Alyrata107_353 REXdb_ID2385 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Alyrata107_355_rc REXdb_ID8054 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_359_rc REXdb_ID8119 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_362 REXdb_ID13261 Ty3/gypsy_CL099 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Alyrata107_364 REXdb_ID2386 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Alyrata107_366_rc REXdb_ID8120 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_369 REXdb_ID8206 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_37_rc REXdb_ID8270 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_373_rc REXdb_ID3056 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Alyrata107_374_rc REXdb_ID8210 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_375_rc REXdb_ID2387 Ty1/copia_CL031 (26) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAT (tRNA-Ile) Alyrata107_376 REXdb_ID8101 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_379 REXdb_ID2388 Ty1/copia_CL031 (26) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 TGGAAAAAAAAAT (tRNA-Ile) - CGTTATCAGCACGA (tRNA-Ile) Alyrata107_380 REXdb_ID8715 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - + not tested not tested 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_383_rc REXdb_ID40 Ty1/copia_CL032 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Alyrata107_388_rc REXdb_ID3057 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Alyrata107_39_rc REXdb_ID4924 Ty1/copia_CL324 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Alyrata107_390 REXdb_ID9725 Ty3/gypsy_CL204 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_391_rc REXdb_ID5748 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCA (tRNA-Asp) - not tested Alyrata107_393_rc REXdb_ID8115 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_400 REXdb_ID8756 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_401 REXdb_ID5735 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAG (tRNA-Asp) - not tested Alyrata107_402_rc REXdb_ID8267 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_41 REXdb_ID8080 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_411_rc REXdb_ID8152 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_412 REXdb_ID8226 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - - not tested not tested 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_415 REXdb_ID12842 Ty3/gypsy_CL053 (20) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 - - not tested Alyrata107_416 REXdb_ID8736 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_417 REXdb_ID8732 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGGCTGTGGG (tRNA-Lys) - not tested Alyrata107_420 REXdb_ID8746 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_424 REXdb_ID8132 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_426_rc REXdb_ID8717 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTTTG (tRNA-?) - not tested Alyrata107_427_rc REXdb_ID4001 Ty1/copia_CL061 (14) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Alyrata107_429_rc REXdb_ID8121 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_43 REXdb_ID8286 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCACCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_435_rc REXdb_ID8265 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_436_rc REXdb_ID8160 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_437_rc REXdb_ID11549 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - not tested Alyrata107_439 REXdb_ID8161 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_444_rc REXdb_ID8070 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_445_rc REXdb_ID8116 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_446 REXdb_ID8751 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_447_rc REXdb_ID12832 Ty3/gypsy_CL053 (20) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Alyrata107_448 REXdb_ID41 Ty1/copia_CL454 (2) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Alyrata107_45 REXdb_ID8158 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_452_rc REXdb_ID8099 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_453_rc REXdb_ID8166 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGG (tRNA-Lys) - not tested Alyrata107_454_rc REXdb_ID42 Ty1/copia_CL325 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Alyrata107_455_rc REXdb_ID8122 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_456_rc REXdb_ID9571 Ty3/gypsy_CL057 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Alyrata107_457_rc REXdb_ID5743 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGT (tRNA-Asn) - not tested Alyrata107_458 REXdb_ID4925 Ty1/copia_CL326 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Alyrata107_46_rc REXdb_ID8211 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_461_rc REXdb_ID8102 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_462_rc REXdb_ID8167 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCTGTGGG (tRNA-?) - not tested Alyrata107_464 REXdb_ID8192 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_466 REXdb_ID9570 Ty3/gypsy_CL057 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Alyrata107_469 REXdb_ID8081 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_472 REXdb_ID8276 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGTCGCCTGTG (tRNA-Ser) - not tested Alyrata107_474 REXdb_ID8089 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_475 REXdb_ID2389 Ty1/copia_CL031 (26) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAT (tRNA-Ile) Alyrata107_478 REXdb_ID12839 Ty3/gypsy_CL053 (20) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Alyrata107_479_rc REXdb_ID12835 Ty3/gypsy_CL053 (20) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Alyrata107_48_rc REXdb_ID8168 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_480 REXdb_ID11510 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Alyrata107_487_rc REXdb_ID5756 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCA (tRNA-Asp) - not tested Alyrata107_488 REXdb_ID12831 Ty3/gypsy_CL053 (20) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGA (tRNA-Met) - not tested Alyrata107_489_rc REXdb_ID2390 Ty1/copia_CL031 (26) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - - Alyrata107_49 REXdb_ID2391 Ty1/copia_CL031 (26) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAT (tRNA-Ile) Alyrata107_493_rc REXdb_ID43 Ty1/copia_CL182 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Alyrata107_494_rc REXdb_ID44 Ty1/copia_CL149 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Alyrata107_495_rc REXdb_ID8123 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_496 REXdb_ID8180 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_497_rc REXdb_ID3058 Ty1/copia_CL108 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Alyrata107_5_rc REXdb_ID8071 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_500_rc REXdb_ID8710 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_501 REXdb_ID8728 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_508 REXdb_ID8256 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGATCGA (tRNA-Lys) - not tested Alyrata107_509_rc REXdb_ID8734 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGT (tRNA-Lys) - not tested Alyrata107_510_rc REXdb_ID4002 Ty1/copia_CL061 (14) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Alyrata107_511 REXdb_ID8193 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_512_rc REXdb_ID8162 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_514 REXdb_ID8739 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_516 REXdb_ID9577 Ty3/gypsy_CL057 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Alyrata107_517_rc REXdb_ID4926 Ty1/copia_CL245 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Alyrata107_519 REXdb_ID8254 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_52 REXdb_ID8049 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_520 REXdb_ID8244 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_522 REXdb_ID8221 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_53_rc REXdb_ID8061 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_530 REXdb_ID3059 Ty1/copia_CL249 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTACAAGAGA (tRNA-Leu) - not tested Alyrata107_531 REXdb_ID8741 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_534_rc REXdb_ID8752 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGGG (tRNA-Lys) - not tested Alyrata107_536 REXdb_ID45 Ty1/copia_CL032 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Alyrata107_541_rc REXdb_ID8212 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_542_rc REXdb_ID8277 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_543_rc REXdb_ID12837 Ty3/gypsy_CL053 (20) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Alyrata107_550 REXdb_ID5736 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAG (tRNA-Asp) - not tested Alyrata107_551 REXdb_ID8222 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_553_rc REXdb_ID11497 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 4 - - not tested Alyrata107_557 REXdb_ID13588 Ty3/gypsy_CL373 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATTCA (tRNA-Met) - not tested Alyrata107_561_rc REXdb_ID2392 Ty1/copia_CL031 (26) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAT (tRNA-Ile) Alyrata107_562 REXdb_ID8779 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_564_rc REXdb_ID11512 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Alyrata107_569 REXdb_ID8289 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_57_rc REXdb_ID8241 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_572 REXdb_ID8268 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGAGA (tRNA-Lys) - not tested Alyrata107_573_rc REXdb_ID8714 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_576 REXdb_ID5757 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAG (tRNA-Asp) - not tested Alyrata107_578 REXdb_ID5751 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCA (tRNA-Asp) - not tested Alyrata107_58_rc REXdb_ID3060 Ty1/copia_CL108 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGTATTCGAT (tRNA-Met) - not tested Alyrata107_584 REXdb_ID2393 Ty1/copia_CL031 (26) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAT (tRNA-Ile) Alyrata107_59_rc REXdb_ID4927 Ty1/copia_CL183 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTAC (tRNA-Met) - not tested Alyrata107_597 REXdb_ID8287 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_598_rc REXdb_ID8753 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTC (tRNA-?) - not tested Alyrata107_60 REXdb_ID8245 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_600_rc REXdb_ID11712 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Alyrata107_604 REXdb_ID8072 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_606 REXdb_ID8722 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_614 REXdb_ID9753 Ty3/gypsy_CL374 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGGAGGGGC (tRNA-Asn) - not tested Alyrata107_616_rc REXdb_ID8174 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_617_rc REXdb_ID8729 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_618_rc REXdb_ID8230 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_62_rc REXdb_ID11508 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Alyrata107_621_rc REXdb_ID8231 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTTTCCGGGGA (tRNA-Asp) - not tested Alyrata107_624 REXdb_ID8139 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_627 REXdb_ID4928 Ty1/copia_CL324 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Alyrata107_634_rc REXdb_ID9574 Ty3/gypsy_CL057 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Alyrata107_636 REXdb_ID46 Ty1/copia_CL032 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGTA (tRNA-Met) - not tested Alyrata107_638_rc REXdb_ID8055 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_639_rc REXdb_ID8189 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_64_rc REXdb_ID5741 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCA (tRNA-Asp) - not tested Alyrata107_640_rc REXdb_ID47 Ty1/copia_CL032 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Alyrata107_642 REXdb_ID1798 Ty1/copia_CL452 (2) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 4 TGGTATCAGAGCCA (tRNA-Met) - not tested Alyrata107_645_rc REXdb_ID2394 Ty1/copia_CL031 (26) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAT (tRNA-Ile) Alyrata107_647_rc REXdb_ID8062 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_649 REXdb_ID48 Ty1/copia_CL455 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Alyrata107_650_rc REXdb_ID4929 Ty1/copia_CL183 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTAGCAGAGCCAGGTT (tRNA-Met) - not tested Alyrata107_657 REXdb_ID11728 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGACA (tRNA-Met) - not tested Alyrata107_658 REXdb_ID49 Ty1/copia_CL318 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Alyrata107_659 REXdb_ID8146 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_66 REXdb_ID8288 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_662 REXdb_ID12834 Ty3/gypsy_CL053 (20) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Alyrata107_663_rc REXdb_ID8750 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_665_rc REXdb_ID13354 Ty3/gypsy_CL164 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Alyrata107_667_rc REXdb_ID9548 Ty3/gypsy_CL056 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAGGAGGGGAT (tRNA-Lys) - not tested Alyrata107_669_rc REXdb_ID8110 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_67_rc REXdb_ID12833 Ty3/gypsy_CL053 (20) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Alyrata107_670 REXdb_ID8117 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_672_rc REXdb_ID9547 Ty3/gypsy_CL056 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTATAAGGA (tRNA-Asn) - not tested Alyrata107_675_rc REXdb_ID8133 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_676 REXdb_ID2395 Ty1/copia_CL031 (26) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAT (tRNA-Ile) Alyrata107_678_rc REXdb_ID8063 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_679 REXdb_ID50 Ty1/copia_CL032 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Alyrata107_680 REXdb_ID9578 Ty3/gypsy_CL057 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGAA (tRNA-Arg) - not tested Alyrata107_681 REXdb_ID9579 Ty3/gypsy_CL057 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Alyrata107_683 REXdb_ID51 Ty1/copia_CL456 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Alyrata107_684 REXdb_ID4003 Ty1/copia_CL655 (1) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Alyrata107_685_rc REXdb_ID8720 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_688 REXdb_ID8237 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTTTG (tRNA-?) - not tested Alyrata107_689_rc REXdb_ID8140 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCATCTGTGGGGAC (tRNA-Lys) - not tested Alyrata107_69_rc REXdb_ID8073 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_690_rc REXdb_ID8056 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_691 REXdb_ID8185 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_692_rc REXdb_ID8727 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_693_rc REXdb_ID13589 Ty3/gypsy_CL375 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATTCA (tRNA-Met) - not tested Alyrata107_694 REXdb_ID12838 Ty3/gypsy_CL053 (20) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGGTAAGAAAG (tRNA-?) - not tested Alyrata107_700 REXdb_ID2396 Ty1/copia_CL031 (26) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGAT (tRNA-Ile) Alyrata107_702_rc REXdb_ID12841 Ty3/gypsy_CL053 (20) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Alyrata107_704_rc REXdb_ID8111 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_705_rc REXdb_ID4004 Ty1/copia_CL061 (14) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Alyrata107_706_rc REXdb_ID4930 Ty1/copia_CL150 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Alyrata107_708 REXdb_ID11805 Ty3/gypsy_CL087 (11) Class_I::LTR::Ty3/gypsy::chromovirus::CRM - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Alyrata107_71_rc REXdb_ID8709 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_713_rc REXdb_ID3061 Ty1/copia_CL108 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 - - not tested Alyrata107_714_rc REXdb_ID12844 Ty3/gypsy_CL053 (20) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 - - not tested Alyrata107_715_rc REXdb_ID8264 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_717 REXdb_ID11506 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Alyrata107_72 REXdb_ID11515 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Alyrata107_727_rc REXdb_ID8725 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_728 REXdb_ID8738 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - + - not tested not tested 5 TGGCGCCGCCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_734_rc REXdb_ID8278 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_736_rc REXdb_ID8754 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_737 REXdb_ID8233 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_742_rc REXdb_ID5738 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAG (tRNA-Asp) - not tested Alyrata107_745 REXdb_ID8730 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_751 REXdb_ID52 Ty1/copia_CL032 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Alyrata107_756_rc REXdb_ID8050 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_758 REXdb_ID3062 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Alyrata107_76 REXdb_ID8090 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_760 REXdb_ID8257 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTCATATTTT (tRNA-His) - not tested Alyrata107_764 REXdb_ID8100 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_765_rc REXdb_ID8757 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_767 REXdb_ID5747 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCA (tRNA-Asp) - not tested Alyrata107_77_rc REXdb_ID8740 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_770_rc REXdb_ID8112 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_776 REXdb_ID53 Ty1/copia_CL126 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Alyrata107_778 REXdb_ID8103 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_780 REXdb_ID54 Ty1/copia_CL246 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Alyrata107_781 REXdb_ID55 Ty1/copia_CL032 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTTTCTTTGTT (tRNA-Glu) - not tested Alyrata107_782_rc REXdb_ID9568 Ty3/gypsy_CL057 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Alyrata107_784_rc REXdb_ID56 Ty1/copia_CL032 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGAG (tRNA-Met) - not tested Alyrata107_785 REXdb_ID4006 Ty1/copia_CL061 (14) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Alyrata107_786_rc REXdb_ID9576 Ty3/gypsy_CL057 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCACGCCAGGTAGGGG (tRNA-Arg) - not tested Alyrata107_787_rc REXdb_ID4931 Ty1/copia_CL245 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Alyrata107_79_rc REXdb_ID9562 Ty3/gypsy_CL057 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Alyrata107_791 REXdb_ID4646 Ty1/copia_CL107 (8) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAAGAGTATTT not tested Alyrata107_792_rc REXdb_ID57 Ty1/copia_CL149 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Alyrata107_795_rc REXdb_ID58 Ty1/copia_CL182 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCCA (tRNA-Met) - not tested Alyrata107_797_rc REXdb_ID9575 Ty3/gypsy_CL057 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGAA (tRNA-Arg) - not tested Alyrata107_80_rc REXdb_ID13083 Ty3/gypsy_CL376 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay - + + + + - + - + - not tested not tested 5 TGGTATCAGAGC (tRNA-Met) - not tested Alyrata107_800_rc REXdb_ID3063 Ty1/copia_CL321 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Alyrata107_801 REXdb_ID4647 Ty1/copia_CL247 (4) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTAAGACAGAATTTA not tested Alyrata107_802_rc REXdb_ID8113 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_807 REXdb_ID8057 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTGCCGTCTGTGGG (tRNA-Lys) - not tested Alyrata107_81_rc REXdb_ID8198 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGTGAA (tRNA-Undet) - not tested Alyrata107_811 REXdb_ID59 Ty1/copia_CL454 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 5 - - not tested Alyrata107_812_rc REXdb_ID8227 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGC (tRNA-Lys) - not tested Alyrata107_813 REXdb_ID3064 Ty1/copia_CL184 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Alyrata107_82_rc REXdb_ID9559 Ty3/gypsy_CL056 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAGGAGGGGAT (tRNA-Lys) - not tested Alyrata107_823_rc REXdb_ID3065 Ty1/copia_CL249 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTACAAGAGA (tRNA-Leu) - not tested Alyrata107_824_rc REXdb_ID3066 Ty1/copia_CL125 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Alyrata107_825 REXdb_ID4932 Ty1/copia_CL150 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCAAGGTT (tRNA-Met) - not tested Alyrata107_827 REXdb_ID8058 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_831 REXdb_ID13475 Ty3/gypsy_CL262 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGGTGAAA (tRNA-Undet) - not tested Alyrata107_833 REXdb_ID2397 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCAC (tRNA-Ile) Alyrata107_837_rc REXdb_ID8074 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_843_rc REXdb_ID4648 Ty1/copia_CL107 (8) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAAGAGTA not tested Alyrata107_848 REXdb_ID8260 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_849_rc REXdb_ID8114 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_85 REXdb_ID8186 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCACACCGTGGGGCT (tRNA-Lys) - not tested Alyrata107_855_rc REXdb_ID9543 Ty3/gypsy_CL056 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCTAGAGGAGGGGAT (tRNA-Lys) - not tested Alyrata107_858 REXdb_ID4007 Ty1/copia_CL185 (5) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - + - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Alyrata107_86_rc REXdb_ID11716 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCCAGAG (tRNA-?) - not tested Alyrata107_860_rc REXdb_ID9552 Ty3/gypsy_CL056 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAGGAGGGGAT (tRNA-Lys) - not tested Alyrata107_862_rc REXdb_ID8737 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_864 REXdb_ID3067 Ty1/copia_CL184 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Alyrata107_865_rc REXdb_ID8202 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_866 REXdb_ID8759 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_868 REXdb_ID4933 Ty1/copia_CL127 (7) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Alyrata107_869 REXdb_ID8764 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - + not tested not tested 5 - - not tested Alyrata107_871_rc REXdb_ID8291 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGACGCCGG (tRNA-?) - not tested Alyrata107_872_rc REXdb_ID8134 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_874_rc REXdb_ID4649 Ty1/copia_CL107 (8) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAAGAGTATTT not tested Alyrata107_875_rc REXdb_ID8249 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGAGGAT (tRNA-Lys) - not tested Alyrata107_876_rc REXdb_ID8223 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_879 REXdb_ID8124 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 4 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_88 REXdb_ID8082 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_880 REXdb_ID8187 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_882_rc REXdb_ID8282 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_885 REXdb_ID8745 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_887 REXdb_ID8224 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_888 REXdb_ID8213 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_891_rc REXdb_ID5746 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCA (tRNA-Asp) - not tested Alyrata107_893 REXdb_ID8163 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_895 REXdb_ID8091 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_899_rc REXdb_ID8194 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_9 REXdb_ID8147 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_90_rc REXdb_ID8203 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_912 REXdb_ID12843 Ty3/gypsy_CL053 (20) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Alyrata107_913_rc REXdb_ID5737 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAG (tRNA-Asp) - not tested Alyrata107_915_rc REXdb_ID8188 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_916 REXdb_ID8169 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_917 REXdb_ID8242 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGATCGAG (tRNA-Lys) - not tested Alyrata107_919_rc REXdb_ID2398 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAACAC (tRNA-Ile) Alyrata107_923 REXdb_ID8279 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_925_rc REXdb_ID8742 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_929 REXdb_ID11686 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Alyrata107_93 REXdb_ID5739 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAG (tRNA-Asp) - not tested Alyrata107_930 REXdb_ID8218 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_932 REXdb_ID8125 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAGAGAGGGG (tRNA-Asn) - not tested Alyrata107_934_rc REXdb_ID8104 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_938_rc REXdb_ID8181 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_939_rc REXdb_ID8170 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_940_rc REXdb_ID8075 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_943 REXdb_ID8228 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_947_rc REXdb_ID60 Ty1/copia_CL182 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCAA (tRNA-Met) - not tested Alyrata107_949_rc REXdb_ID2399 Ty1/copia_CL031 (26) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAT (tRNA-Ile) Alyrata107_95 REXdb_ID8204 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_950_rc REXdb_ID3068 Ty1/copia_CL457 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Alyrata107_951_rc REXdb_ID8229 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Alyrata107_954_rc REXdb_ID3069 Ty1/copia_CL108 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGTATTCGAT (tRNA-Met) - not tested Alyrata107_956_rc REXdb_ID3070 Ty1/copia_CL457 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Alyrata107_958 REXdb_ID8092 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_96 REXdb_ID8259 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGCCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_962_rc REXdb_ID8716 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_965 REXdb_ID8126 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGG (tRNA-Lys) - not tested Alyrata107_968_rc REXdb_ID3071 Ty1/copia_CL062 (14) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Alyrata107_97_rc REXdb_ID5740 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAG (tRNA-Asp) - not tested Alyrata107_970 REXdb_ID11727 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGATTC (tRNA-Met) - not tested Alyrata107_971 REXdb_ID3072 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Alyrata107_973 REXdb_ID61 Ty1/copia_CL032 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Alyrata107_975_rc REXdb_ID3073 Ty1/copia_CL322 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Alyrata107_977_rc REXdb_ID8076 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_978 REXdb_ID8077 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_981_rc REXdb_ID8127 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_982_rc REXdb_ID9549 Ty3/gypsy_CL056 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGGAGGGTA (tRNA-Asn) - not tested Alyrata107_984 REXdb_ID4934 Ty1/copia_CL150 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Alyrata107_986 REXdb_ID3074 Ty1/copia_CL320 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Alyrata107_987_rc REXdb_ID8199 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_988 REXdb_ID62 Ty1/copia_CL325 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Alyrata107_992_rc REXdb_ID8048 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_993_rc REXdb_ID11726 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGATTC (tRNA-Met) - not tested Alyrata107_994_rc REXdb_ID8047 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Alyrata107_996 REXdb_ID8093 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGCCTGTGGGGAT (tRNA-Lys) - not tested Alyrata107_997_rc REXdb_ID2400 Ty1/copia_CL031 (26) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAT (tRNA-Ile) Alyrata107_999_rc REXdb_ID63 Ty1/copia_CL182 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested AraT_ID257 REXdb_ID13108 Ty3/gypsy_CL121 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - not tested not tested not tested not tested Athaliana167_1 REXdb_ID3075 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Athaliana167_101 REXdb_ID4935 Ty1/copia_CL186 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Athaliana167_109_rc REXdb_ID13026 Ty3/gypsy_CL121 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - not tested not tested - - 5 TGGTATCAGAGCGA (tRNA-Met) - not tested Athaliana167_11 REXdb_ID13590 Ty3/gypsy_CL377 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGTTCGT (tRNA-?) - not tested Athaliana167_111 REXdb_ID64 Ty1/copia_CL126 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Athaliana167_112 REXdb_ID4936 Ty1/copia_CL127 (7) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAAC (tRNA-Met) - not tested Athaliana167_113_rc REXdb_ID65 Ty1/copia_CL095 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Athaliana167_12 REXdb_ID5758 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 - - not tested Athaliana167_120_rc REXdb_ID4937 Ty1/copia_CL186 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTA (tRNA-Met) - not tested Athaliana167_121_rc REXdb_ID66 Ty1/copia_CL095 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Athaliana167_122_rc REXdb_ID13406 Ty3/gypsy_CL205 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTT (tRNA-Thr) - not tested Athaliana167_127_rc REXdb_ID2401 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGACATT (tRNA-Ile) Athaliana167_128_rc REXdb_ID3076 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Athaliana167_129_rc REXdb_ID67 Ty1/copia_CL095 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Athaliana167_130 REXdb_ID2402 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Athaliana167_134_rc REXdb_ID13408 Ty3/gypsy_CL205 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTCTTC (tRNA-?) - not tested Athaliana167_136 REXdb_ID13029 Ty3/gypsy_CL121 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCGA (tRNA-Met) - not tested Athaliana167_14_rc REXdb_ID5763 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 - - not tested Athaliana167_150 REXdb_ID2403 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGACATT (tRNA-Ile) Athaliana167_151_rc REXdb_ID5749 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Athaliana167_153 REXdb_ID4938 Ty1/copia_CL656 (1) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Athaliana167_157_rc REXdb_ID9754 Ty3/gypsy_CL263 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAAGTAGGGGTC (tRNA-Arg) - not tested Athaliana167_159_rc REXdb_ID68 Ty1/copia_CL126 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCAA (tRNA-Met) - not tested Athaliana167_161_rc REXdb_ID69 Ty1/copia_CL126 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCAA (tRNA-Met) - not tested Athaliana167_162 REXdb_ID4008 Ty1/copia_CL185 (5) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Athaliana167_163 REXdb_ID3077 Ty1/copia_CL458 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTAGCAGAGC (tRNA-Met) - not tested Athaliana167_164_rc REXdb_ID3078 Ty1/copia_CL249 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTACAAAAGA (tRNA-Leu) - not tested Athaliana167_165_rc REXdb_ID70 Ty1/copia_CL095 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Athaliana167_20_rc REXdb_ID9727 Ty3/gypsy_CL204 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 4 TGGCGCCGTCTATGGG (tRNA-Lys) - not tested Athaliana167_22 REXdb_ID9560 Ty3/gypsy_CL056 (19) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCTAGAAGGAGGGGTTA (tRNA-Asn) - not tested Athaliana167_25_rc REXdb_ID71 Ty1/copia_CL327 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Athaliana167_26 REXdb_ID3079 Ty1/copia_CL108 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Athaliana167_27_rc REXdb_ID72 Ty1/copia_CL126 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Athaliana167_28_rc REXdb_ID73 Ty1/copia_CL095 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Athaliana167_29_rc REXdb_ID3080 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Athaliana167_30_rc REXdb_ID12847 Ty3/gypsy_CL053 (20) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Athaliana167_31_rc REXdb_ID12845 Ty3/gypsy_CL053 (20) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Athaliana167_34_rc REXdb_ID13409 Ty3/gypsy_CL206 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Athaliana167_43 REXdb_ID4939 Ty1/copia_CL657 (1) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Athaliana167_44 REXdb_ID12846 Ty3/gypsy_CL053 (20) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 - - not tested Athaliana167_47 REXdb_ID2404 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGA (tRNA-Ile) Athaliana167_5_rc REXdb_ID74 Ty1/copia_CL327 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Athaliana167_50 REXdb_ID5759 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Athaliana167_51 REXdb_ID8269 Ty3/gypsy_CL006 (247) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Athaliana167_52 REXdb_ID3081 Ty1/copia_CL108 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Athaliana167_55_rc REXdb_ID4940 Ty1/copia_CL150 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Athaliana167_58_rc REXdb_ID13410 Ty3/gypsy_CL206 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Athaliana167_6 REXdb_ID3082 Ty1/copia_CL249 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTACAAAAGA (tRNA-Leu) - not tested Athaliana167_61 REXdb_ID2405 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Athaliana167_62 REXdb_ID75 Ty1/copia_CL246 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAGCATAGC (tRNA-?) - not tested Athaliana167_63 REXdb_ID3083 Ty1/copia_CL184 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Athaliana167_66 REXdb_ID13028 Ty3/gypsy_CL121 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCGA (tRNA-Met) - not tested Athaliana167_67_rc REXdb_ID11504 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Athaliana167_7 REXdb_ID4009 Ty1/copia_CL250 (4) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATTAGAGCG (tRNA-Met) - not tested Athaliana167_72 REXdb_ID3084 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Athaliana167_74_rc REXdb_ID1823 Ty1/copia_CL248 (4) Class_I::LTR::Ty1/copia::Angela - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCGAGGTTT (tRNA-Met) - not tested Athaliana167_75 REXdb_ID13407 Ty3/gypsy_CL205 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTCTTC (tRNA-?) - not tested Athaliana167_8 REXdb_ID13027 Ty3/gypsy_CL121 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCGA (tRNA-Met) - not tested Athaliana167_86_rc REXdb_ID4941 Ty1/copia_CL658 (1) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATTAGAGCCT (tRNA-Met) - not tested Athaliana167_88 REXdb_ID76 Ty1/copia_CL187 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Athaliana167_9 REXdb_ID13411 Ty3/gypsy_CL206 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Athaliana167_90 REXdb_ID3085 Ty1/copia_CL151 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Athaliana167_92_rc REXdb_ID3086 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Athaliana167_93_rc REXdb_ID77 Ty1/copia_CL456 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Athaliana167_94_rc REXdb_ID8788 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGGAGGGG (tRNA-Asn) - not tested Athaliana167_97 REXdb_ID9726 Ty3/gypsy_CL204 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Athaliana167_98 REXdb_ID8798 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCTAGAGGAGGGGAT (tRNA-Lys) - not tested Athila_AB005248.1 REXdb_ID6776 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - not tested not tested not tested not tested Athila_AF296831.1 REXdb_ID6777 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - not tested not tested not tested not tested BAGY2 REXdb_ID6778 Ty3/gypsy_CL264 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - not tested not tested not tested not tested Bdistachyon283_10 REXdb_ID78 Ty1/copia_CL251 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGATT (tRNA-Met) - not tested Bdistachyon283_100_rc REXdb_ID13591 Ty3/gypsy_CL378 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAAAGCCAT (tRNA-Met) - not tested Bdistachyon283_102_rc REXdb_ID9681 Ty3/gypsy_CL111 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Bdistachyon283_104 REXdb_ID13592 Ty3/gypsy_CL379 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Bdistachyon283_105_rc REXdb_ID1824 Ty1/copia_CL050 (18) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 4 - - not tested Bdistachyon283_106 REXdb_ID12953 Ty3/gypsy_CL100 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - + 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Bdistachyon283_107_rc REXdb_ID1799 Ty1/copia_CL252 (4) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Bdistachyon283_11_rc REXdb_ID1825 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Bdistachyon283_110_rc REXdb_ID1800 Ty1/copia_CL252 (4) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Bdistachyon283_111 REXdb_ID12956 Ty3/gypsy_CL100 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - + 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Bdistachyon283_112 REXdb_ID12957 Ty3/gypsy_CL100 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - + 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Bdistachyon283_113 REXdb_ID3087 Ty1/copia_CL253 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Bdistachyon283_114_rc REXdb_ID3088 Ty1/copia_CL328 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Bdistachyon283_115 REXdb_ID3089 Ty1/copia_CL459 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Bdistachyon283_117 REXdb_ID3090 Ty1/copia_CL188 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Bdistachyon283_118_rc REXdb_ID3091 Ty1/copia_CL188 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Bdistachyon283_119_rc REXdb_ID13476 Ty3/gypsy_CL265 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Bdistachyon283_122_rc REXdb_ID79 Ty1/copia_CL033 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGATTTG (tRNA-Met) - not tested Bdistachyon283_124 REXdb_ID3092 Ty1/copia_CL188 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Bdistachyon283_125_rc REXdb_ID12961 Ty3/gypsy_CL100 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay - + + + + - + - - - not tested not tested 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Bdistachyon283_127_rc REXdb_ID1826 Ty1/copia_CL050 (18) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCTAGAT (tRNA-Met) - not tested Bdistachyon283_129 REXdb_ID13477 Ty3/gypsy_CL265 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Bdistachyon283_13 REXdb_ID3093 Ty1/copia_CL253 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Bdistachyon283_132 REXdb_ID4650 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - - not tested Bdistachyon283_135 REXdb_ID11324 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM - + + + + - - + - - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Bdistachyon283_138 REXdb_ID9739 Ty3/gypsy_CL266 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + + + 5 TGGCGCCGACCGTGGGGAA (tRNA-Lys) - not tested Bdistachyon283_141 REXdb_ID13478 Ty3/gypsy_CL267 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATTCA (tRNA-Met) - not tested Bdistachyon283_142_rc REXdb_ID9688 Ty3/gypsy_CL111 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Bdistachyon283_144 REXdb_ID1827 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Bdistachyon283_147 REXdb_ID1828 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Bdistachyon283_154_rc REXdb_ID11325 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 - - not tested Bdistachyon283_158 REXdb_ID11328 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Bdistachyon283_16 REXdb_ID9755 Ty3/gypsy_CL380 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - + - - 4 TGGCACCCACCGTGGGGCC (tRNA-Lys) - not tested Bdistachyon283_161 REXdb_ID1829 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Bdistachyon283_162_rc REXdb_ID1830 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Bdistachyon283_163_rc REXdb_ID1831 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Bdistachyon283_164 REXdb_ID9687 Ty3/gypsy_CL111 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - + + not tested not tested 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Bdistachyon283_166 REXdb_ID1832 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGACG (tRNA-Leu) - not tested Bdistachyon283_169 REXdb_ID12959 Ty3/gypsy_CL100 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 TGGTATCAGAGCA (tRNA-Met) - not tested Bdistachyon283_17_rc REXdb_ID81 Ty1/copia_CL033 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGATTTG (tRNA-Met) - not tested Bdistachyon283_170_rc REXdb_ID9684 Ty3/gypsy_CL111 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCACCAGGTAGGGG (tRNA-Arg) - not tested Bdistachyon283_171_rc REXdb_ID9756 Ty3/gypsy_CL381 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGTCGTCAG (tRNA-Ser) - not tested Bdistachyon283_174_rc REXdb_ID3094 Ty1/copia_CL188 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Bdistachyon283_178_rc REXdb_ID80 Ty1/copia_CL460 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGCCA (tRNA-?) - not tested Bdistachyon283_18_rc REXdb_ID1838 Ty1/copia_CL050 (18) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 4 TGGTATCAGAGCCAGGTTTA (tRNA-Met) - not tested Bdistachyon283_180 REXdb_ID3095 Ty1/copia_CL253 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Bdistachyon283_181 REXdb_ID1833 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Bdistachyon283_182_rc REXdb_ID1834 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Bdistachyon283_183 REXdb_ID1835 Ty1/copia_CL050 (18) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCTAGAT (tRNA-Met) - not tested Bdistachyon283_185_rc REXdb_ID1836 Ty1/copia_CL050 (18) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCTAGAT (tRNA-Met) - not tested Bdistachyon283_186 REXdb_ID82 Ty1/copia_CL254 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Bdistachyon283_189 REXdb_ID1837 Ty1/copia_CL050 (18) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCTAGAT (tRNA-Met) - not tested Bdistachyon283_19 REXdb_ID4651 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTAT not tested Bdistachyon283_191_rc REXdb_ID1839 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Bdistachyon283_193 REXdb_ID9686 Ty3/gypsy_CL111 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - + + not tested not tested 5 TGGCACGCCAGGTAGGGG (tRNA-Arg) - not tested Bdistachyon283_195_rc REXdb_ID83 Ty1/copia_CL033 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAATCA (tRNA-?) - not tested Bdistachyon283_2_rc REXdb_ID13594 Ty3/gypsy_CL383 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATTC (tRNA-Met) - not tested Bdistachyon283_20_rc REXdb_ID4010 Ty1/copia_CL128 (7) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCAAGGTTTC (tRNA-Met) - not tested Bdistachyon283_21 REXdb_ID4011 Ty1/copia_CL128 (7) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCAAGGTTTC (tRNA-Met) - not tested Bdistachyon283_22_rc REXdb_ID13593 Ty3/gypsy_CL382 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Bdistachyon283_23 REXdb_ID3096 Ty1/copia_CL328 (3) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTTTCAGAGC (tRNA-Met) - not tested Bdistachyon283_24_rc REXdb_ID3097 Ty1/copia_CL188 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Bdistachyon283_25 REXdb_ID3098 Ty1/copia_CL461 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Bdistachyon283_3_rc REXdb_ID84 Ty1/copia_CL109 (8) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Bdistachyon283_33_rc REXdb_ID1840 Ty1/copia_CL050 (18) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCTAGAT (tRNA-Met) - not tested Bdistachyon283_34_rc REXdb_ID13595 Ty3/gypsy_CL384 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTACCAGAGA (tRNA-?) - not tested Bdistachyon283_35_rc REXdb_ID9682 Ty3/gypsy_CL111 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Bdistachyon283_36_rc REXdb_ID1841 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Bdistachyon283_37_rc REXdb_ID13596 Ty3/gypsy_CL385 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Bdistachyon283_39_rc REXdb_ID1842 Ty1/copia_CL050 (18) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCTAGAT (tRNA-Met) - not tested Bdistachyon283_41_rc REXdb_ID9685 Ty3/gypsy_CL111 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Bdistachyon283_43_rc REXdb_ID1843 Ty1/copia_CL050 (18) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCTAGAT (tRNA-Met) - not tested Bdistachyon283_45_rc REXdb_ID11329 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Bdistachyon283_47_rc REXdb_ID13597 Ty3/gypsy_CL386 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Bdistachyon283_48_rc REXdb_ID11327 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Bdistachyon283_52_rc REXdb_ID11326 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 6 - - not tested Bdistachyon283_53 REXdb_ID1844 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATTAGAGCC (tRNA-Met) - not tested Bdistachyon283_54 REXdb_ID9683 Ty3/gypsy_CL111 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Bdistachyon283_6 REXdb_ID1845 Ty1/copia_CL050 (18) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCTAGAT (tRNA-Met) - not tested Bdistachyon283_62_rc REXdb_ID12960 Ty3/gypsy_CL100 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 4 - - not tested Bdistachyon283_63_rc REXdb_ID12955 Ty3/gypsy_CL100 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + - + 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Bdistachyon283_66 REXdb_ID3099 Ty1/copia_CL461 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Bdistachyon283_67 REXdb_ID1846 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Bdistachyon283_69 REXdb_ID1847 Ty1/copia_CL050 (18) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCTAGAT (tRNA-Met) - not tested Bdistachyon283_72 REXdb_ID1848 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Bdistachyon283_74_rc REXdb_ID1849 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Bdistachyon283_75_rc REXdb_ID1850 Ty1/copia_CL050 (18) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Bdistachyon283_79_rc REXdb_ID3100 Ty1/copia_CL253 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Bdistachyon283_8_rc REXdb_ID9740 Ty3/gypsy_CL266 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACCGTGGGGAA (tRNA-Lys) - not tested Bdistachyon283_81_rc REXdb_ID4652 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTAT not tested Bdistachyon283_83_rc REXdb_ID12958 Ty3/gypsy_CL100 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - + 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Bdistachyon283_84_rc REXdb_ID12954 Ty3/gypsy_CL100 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Bdistachyon283_86_rc REXdb_ID1851 Ty1/copia_CL050 (18) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCTAGAT (tRNA-Met) - not tested Bdistachyon283_9 REXdb_ID3101 Ty1/copia_CL328 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Bdistachyon283_94 REXdb_ID3102 Ty1/copia_CL459 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Bdistachyon283_95 REXdb_ID1801 Ty1/copia_CL252 (4) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Bdistachyon283_98_rc REXdb_ID1852 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Beetle2_ID78 REXdb_ID11993 Ty3/gypsy_CL387 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM - + + + + - - - - - not tested not tested not tested not tested not tested not tested Bica REXdb_ID5416 Ty3/gypsy_CL388 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::non-chromo-outgroup - + + + + - - - - - not tested not tested not tested not tested not tested not tested BLOOD REXdb_ID5417 Ty3/gypsy_CL268 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::non-chromo-outgroup - + + + + - - - - - not tested not tested not tested not tested not tested not tested BrapaFPsc277_1_rc REXdb_ID13314 Ty3/gypsy_CL135 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGTCGTG (tRNA-?) - not tested BrapaFPsc277_108_rc REXdb_ID11743 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested BrapaFPsc277_121 REXdb_ID13598 Ty3/gypsy_CL389 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTACGGTGAGCGTGGA (tRNA-Phe) - not tested BrapaFPsc277_124_rc REXdb_ID11736 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested BrapaFPsc277_126 REXdb_ID11956 Ty3/gypsy_CL269 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGAC (tRNA-Met) - not tested BrapaFPsc277_130_rc REXdb_ID4942 Ty1/copia_CL462 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTGGTTACG (tRNA-Met) - not tested BrapaFPsc277_131_rc REXdb_ID13599 Ty3/gypsy_CL390 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAAAGCTA (tRNA-Met) - not tested BrapaFPsc277_132 REXdb_ID13267 Ty3/gypsy_CL099 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested BrapaFPsc277_133_rc REXdb_ID4943 Ty1/copia_CL189 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTCG (tRNA-Met) - not tested BrapaFPsc277_137_rc REXdb_ID13480 Ty3/gypsy_CL270 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGGTGAAA (tRNA-Undet) - not tested BrapaFPsc277_140_rc REXdb_ID13600 Ty3/gypsy_CL391 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested BrapaFPsc277_142_rc REXdb_ID11819 Ty3/gypsy_CL082 (12) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested BrapaFPsc277_143_rc REXdb_ID85 Ty1/copia_CL463 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested BrapaFPsc277_145_rc REXdb_ID4944 Ty1/copia_CL464 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested BrapaFPsc277_146 REXdb_ID86 Ty1/copia_CL465 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested BrapaFPsc277_147 REXdb_ID87 Ty1/copia_CL466 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested BrapaFPsc277_150_rc REXdb_ID4945 Ty1/copia_CL255 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested BrapaFPsc277_158_rc REXdb_ID13601 Ty3/gypsy_CL392 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGATTGT (tRNA-?) - not tested BrapaFPsc277_163_rc REXdb_ID4946 Ty1/copia_CL467 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested BrapaFPsc277_167_rc REXdb_ID13482 Ty3/gypsy_CL271 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGGTGAGCATT (tRNA-Phe) - not tested BrapaFPsc277_172_rc REXdb_ID13483 Ty3/gypsy_CL271 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCGCGGTGAGCGT (tRNA-Phe) - not tested BrapaFPsc277_173_rc REXdb_ID11738 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAAT (tRNA-?) - not tested BrapaFPsc277_177_rc REXdb_ID4947 Ty1/copia_CL467 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested BrapaFPsc277_183 REXdb_ID13602 Ty3/gypsy_CL393 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGGTGAGC (tRNA-Phe) - not tested BrapaFPsc277_187_rc REXdb_ID11821 Ty3/gypsy_CL082 (12) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested BrapaFPsc277_195 REXdb_ID4948 Ty1/copia_CL468 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTACGA (tRNA-Met) - not tested BrapaFPsc277_196 REXdb_ID88 Ty1/copia_CL469 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested BrapaFPsc277_197 REXdb_ID9741 Ty3/gypsy_CL272 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCTACCGTGGGGC (tRNA-Lys) - not tested BrapaFPsc277_201 REXdb_ID89 Ty1/copia_CL470 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested BrapaFPsc277_206_rc REXdb_ID13603 Ty3/gypsy_CL394 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGGTGAC (tRNA-Phe) - not tested BrapaFPsc277_207 REXdb_ID4949 Ty1/copia_CL464 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested BrapaFPsc277_208_rc REXdb_ID13412 Ty3/gypsy_CL207 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGGTGAAA (tRNA-Undet) - not tested BrapaFPsc277_209 REXdb_ID3103 Ty1/copia_CL125 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested BrapaFPsc277_211_rc REXdb_ID90 Ty1/copia_CL471 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested BrapaFPsc277_213 REXdb_ID91 Ty1/copia_CL256 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested BrapaFPsc277_217 REXdb_ID13413 Ty3/gypsy_CL207 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGGTGAAA (tRNA-Undet) - not tested BrapaFPsc277_224 REXdb_ID9742 Ty3/gypsy_CL272 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCTG (tRNA-Lys) - not tested BrapaFPsc277_225 REXdb_ID92 Ty1/copia_CL472 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested BrapaFPsc277_25_rc REXdb_ID13481 Ty3/gypsy_CL270 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGGTGAAA (tRNA-Undet) - not tested BrapaFPsc277_26_rc REXdb_ID2406 Ty1/copia_CL257 (4) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - GTTATCAGCACGA (tRNA-Ile) BrapaFPsc277_29 REXdb_ID93 Ty1/copia_CL463 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested BrapaFPsc277_3 REXdb_ID4950 Ty1/copia_CL329 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTCC (tRNA-Met) - not tested BrapaFPsc277_30_rc REXdb_ID3104 Ty1/copia_CL322 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested BrapaFPsc277_31 REXdb_ID94 Ty1/copia_CL472 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested BrapaFPsc277_32_rc REXdb_ID3105 Ty1/copia_CL125 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested BrapaFPsc277_36 REXdb_ID4951 Ty1/copia_CL329 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested BrapaFPsc277_45_rc REXdb_ID4952 Ty1/copia_CL462 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested BrapaFPsc277_46 REXdb_ID11823 Ty3/gypsy_CL082 (12) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested BrapaFPsc277_48_rc REXdb_ID13414 Ty3/gypsy_CL207 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGGTGAAA (tRNA-Undet) - not tested BrapaFPsc277_49_rc REXdb_ID95 Ty1/copia_CL470 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested BrapaFPsc277_5 REXdb_ID4953 Ty1/copia_CL329 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTTCGA (tRNA-Met) - not tested BrapaFPsc277_51_rc REXdb_ID96 Ty1/copia_CL256 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested BrapaFPsc277_52_rc REXdb_ID11820 Ty3/gypsy_CL082 (12) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested BrapaFPsc277_58 REXdb_ID97 Ty1/copia_CL469 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested BrapaFPsc277_68_rc REXdb_ID11742 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAAT (tRNA-?) - not tested BrapaFPsc277_69 REXdb_ID98 Ty1/copia_CL465 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested BrapaFPsc277_7 REXdb_ID13268 Ty3/gypsy_CL099 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGGAAACAC (tRNA-Ala) - not tested BrapaFPsc277_70_rc REXdb_ID13604 Ty3/gypsy_CL395 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested BrapaFPsc277_76 REXdb_ID99 Ty1/copia_CL466 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested BrapaFPsc277_77 REXdb_ID100 Ty1/copia_CL471 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested BrapaFPsc277_80_rc REXdb_ID101 Ty1/copia_CL256 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested BrapaFPsc277_82 REXdb_ID4954 Ty1/copia_CL468 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested BrapaFPsc277_84_rc REXdb_ID13605 Ty3/gypsy_CL396 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested BrapaFPsc277_85_rc REXdb_ID13606 Ty3/gypsy_CL397 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGAGTGA (tRNA-?) - not tested BrapaFPsc277_9 REXdb_ID13607 Ty3/gypsy_CL398 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGTTGTG (tRNA-?) - not tested BrapaFPsc277_98 REXdb_ID11822 Ty3/gypsy_CL082 (12) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested BraR_ID236 REXdb_ID13814 Ty3/gypsy_CL399 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - not tested not tested not tested not tested BraR1_ID113 REXdb_ID11994 Ty3/gypsy_CL082 (12) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - not tested not tested not tested not tested BraR2_ID120 REXdb_ID11995 Ty3/gypsy_CL082 (12) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - not tested not tested not tested not tested BraR3_ID114 REXdb_ID11996 Ty3/gypsy_CL269 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - not tested not tested not tested not tested BraR4_ID118 REXdb_ID11997 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - not tested not tested not tested not tested BraR5_ID117 REXdb_ID11998 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested BraR6_ID119 REXdb_ID11999 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - not tested not tested not tested not tested BraR7_ID116 REXdb_ID12000 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - not tested not tested not tested not tested Bstricta278_100 REXdb_ID13484 Ty3/gypsy_CL273 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Bstricta278_104_rc REXdb_ID13608 Ty3/gypsy_CL400 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Bstricta278_105 REXdb_ID4955 Ty1/copia_CL473 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCATAGCG (tRNA-Met) - not tested Bstricta278_128 REXdb_ID13609 Ty3/gypsy_CL401 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Bstricta278_133_rc REXdb_ID3106 Ty1/copia_CL474 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Bstricta278_134_rc REXdb_ID3107 Ty1/copia_CL330 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Bstricta278_137 REXdb_ID13610 Ty3/gypsy_CL402 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGGCTTT (tRNA-?) - not tested Bstricta278_139 REXdb_ID102 Ty1/copia_CL187 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Bstricta278_141 REXdb_ID3108 Ty1/copia_CL125 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Bstricta278_169_rc REXdb_ID3109 Ty1/copia_CL474 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Bstricta278_171 REXdb_ID2407 Ty1/copia_CL031 (26) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAT (tRNA-Ile) Bstricta278_198_rc REXdb_ID103 Ty1/copia_CL475 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Bstricta278_227 REXdb_ID13485 Ty3/gypsy_CL273 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Bstricta278_234_rc REXdb_ID104 Ty1/copia_CL475 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Bstricta278_255 REXdb_ID3110 Ty1/copia_CL190 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Bstricta278_261_rc REXdb_ID11706 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGACCCG (tRNA-Met) - not tested Bstricta278_29_rc REXdb_ID105 Ty1/copia_CL032 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Bstricta278_30 REXdb_ID3111 Ty1/copia_CL184 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Bstricta278_35 REXdb_ID13084 Ty3/gypsy_CL403 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Bstricta278_38_rc REXdb_ID13611 Ty3/gypsy_CL404 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Bstricta278_53 REXdb_ID2703 Ty1/copia_CL152 (6) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Bstricta278_6_rc REXdb_ID2704 Ty1/copia_CL152 (6) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Bstricta278_61 REXdb_ID13612 Ty3/gypsy_CL405 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGGTGCA (tRNA-?) - not tested Bstricta278_62 REXdb_ID13613 Ty3/gypsy_CL406 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGTGAGT (tRNA-?) - not tested Bstricta278_68 REXdb_ID3112 Ty1/copia_CL330 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Bstricta278_69_rc REXdb_ID3113 Ty1/copia_CL330 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Bstricta278_71_rc REXdb_ID2408 Ty1/copia_CL031 (26) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGAT (tRNA-Ile) Bstricta278_79_rc REXdb_ID13614 Ty3/gypsy_CL407 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCGGAAACGA (tRNA-Arg) - not tested Bstricta278_82_rc REXdb_ID13615 Ty3/gypsy_CL408 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Bstricta278_85 REXdb_ID13616 Ty3/gypsy_CL409 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGTGAGT (tRNA-?) - not tested Bstricta278_88_rc REXdb_ID106 Ty1/copia_CL476 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Bstricta278_89 REXdb_ID3114 Ty1/copia_CL190 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Bstricta278_9 REXdb_ID5939 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGACC (tRNA-Asp) - not tested Bstricta278_92_rc REXdb_ID13617 Ty3/gypsy_CL410 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCGGAGACGAGA (tRNA-Ser) - not tested Calypso REXdb_ID6779 Ty3/gypsy_CL153 (5) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - not tested not tested not tested not tested CarP1_ID79 REXdb_ID12001 Ty3/gypsy_CL411 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - not tested not tested not tested not tested Cclementina182_1_rc REXdb_ID6086 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_10 REXdb_ID9353 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1000 REXdb_ID6041 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1001_rc REXdb_ID9119 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1006_rc REXdb_ID6080 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1007_rc REXdb_ID6052 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1008_rc REXdb_ID4653 Ty1/copia_CL069 (13) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTTAAGGTTTTA not tested Cclementina182_1009_rc REXdb_ID107 Ty1/copia_CL477 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Cclementina182_101 REXdb_ID9379 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1014 REXdb_ID6127 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1015 REXdb_ID6039 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGATTG (tRNA-Asp) - not tested Cclementina182_1017_rc REXdb_ID108 Ty1/copia_CL331 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Cclementina182_1019 REXdb_ID6069 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila - + + + + - - - + - not tested not tested 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Cclementina182_102 REXdb_ID9400 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - + not tested not tested 4 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1023 REXdb_ID13415 Ty3/gypsy_CL208 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCGGAGGGAA (tRNA-Ser) - not tested Cclementina182_1024_rc REXdb_ID4956 Ty1/copia_CL478 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Cclementina182_1025_rc REXdb_ID4957 Ty1/copia_CL191 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_1026_rc REXdb_ID9661 Ty3/gypsy_CL092 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1027_rc REXdb_ID9147 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_1028 REXdb_ID13356 Ty3/gypsy_CL166 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTG (tRNA-Thr) - not tested Cclementina182_1029_rc REXdb_ID9133 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_103 REXdb_ID9383 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1030 REXdb_ID6219 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1033 REXdb_ID109 Ty1/copia_CL332 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_1034 REXdb_ID4958 Ty1/copia_CL110 (8) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_1036 REXdb_ID9130 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1037 REXdb_ID6145 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1039_rc REXdb_ID6081 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1042 REXdb_ID110 Ty1/copia_CL479 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Cclementina182_1044_rc REXdb_ID9148 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 4 TGGAGGAGGAAG (tRNA-Cys) - not tested Cclementina182_1047_rc REXdb_ID13286 Ty3/gypsy_CL122 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_1049 REXdb_ID6603 Ty3/gypsy_CL074 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGATTGA (tRNA-Asp) - not tested Cclementina182_105 REXdb_ID9367 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1051 REXdb_ID4012 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_1056_rc REXdb_ID6244 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1058_rc REXdb_ID6655 Ty3/gypsy_CL123 (7) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Cclementina182_1059 REXdb_ID4959 Ty1/copia_CL258 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_1060 REXdb_ID4654 Ty1/copia_CL069 (13) Class_I::LTR::Ty1/copia::TAR - + + + + - - - - - not tested not tested 5 - CTTTAAGGTTTTATTT not tested Cclementina182_1061_rc REXdb_ID6221 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1064_rc REXdb_ID4013 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCAAGGT (tRNA-Met) - not tested Cclementina182_1065 REXdb_ID6207 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGTCGGGGA (tRNA-Asp) - not tested Cclementina182_1066_rc REXdb_ID6197 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1067_rc REXdb_ID6202 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila - + + + + - - - - - not tested not tested 5 TGGCGCCGTTGCCCGGG (tRNA-Asp) - not tested Cclementina182_1068_rc REXdb_ID6046 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1069 REXdb_ID6211 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCTGGGGA (tRNA-Asp) - not tested Cclementina182_1071_rc REXdb_ID6203 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Cclementina182_1072_rc REXdb_ID4960 Ty1/copia_CL110 (8) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_1074_rc REXdb_ID13288 Ty3/gypsy_CL122 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_1075 REXdb_ID6033 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1077 REXdb_ID6076 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1078 REXdb_ID6049 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1079 REXdb_ID6164 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_108_rc REXdb_ID9393 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1081_rc REXdb_ID4014 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCGAGGT (tRNA-Met) - not tested Cclementina182_1083 REXdb_ID6238 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1085 REXdb_ID11754 Ty3/gypsy_CL054 (20) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGTA (tRNA-Met) - not tested Cclementina182_1086_rc REXdb_ID4015 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCGAGGT (tRNA-Met) - not tested Cclementina182_1088 REXdb_ID4016 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATTAGAGCCT (tRNA-Met) - not tested Cclementina182_1089_rc REXdb_ID6025 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_109_rc REXdb_ID11773 Ty3/gypsy_CL054 (20) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGA (tRNA-Met) - not tested Cclementina182_1090 REXdb_ID1853 Ty1/copia_CL057 (15) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGTA (tRNA-Met) - not tested Cclementina182_1092_rc REXdb_ID6125 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1093 REXdb_ID4961 Ty1/copia_CL153 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_1097 REXdb_ID4962 Ty1/copia_CL096 (9) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Cclementina182_1098 REXdb_ID6175 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCTGGGGA (tRNA-Asp) - not tested Cclementina182_1099 REXdb_ID9373 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Cclementina182_1100 REXdb_ID4963 Ty1/copia_CL111 (8) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_1104 REXdb_ID6082 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1108_rc REXdb_ID11766 Ty3/gypsy_CL054 (20) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 - - not tested Cclementina182_1109_rc REXdb_ID6133 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1112_rc REXdb_ID6167 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1113_rc REXdb_ID4017 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_1114_rc REXdb_ID6055 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1115 REXdb_ID111 Ty1/copia_CL259 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCCTA (tRNA-Met) - not tested Cclementina182_1119_rc REXdb_ID6247 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCATTGCCGG (tRNA-Asp) - not tested Cclementina182_112_rc REXdb_ID114 Ty1/copia_CL259 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAACC (tRNA-?) - not tested Cclementina182_1120_rc REXdb_ID112 Ty1/copia_CL112 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_1123_rc REXdb_ID6053 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1124_rc REXdb_ID6647 Ty3/gypsy_CL112 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGTGTCATTTAT (tRNA-Asn) - not tested Cclementina182_1125 REXdb_ID6215 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1126 REXdb_ID6021 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1128 REXdb_ID113 Ty1/copia_CL112 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_1129_rc REXdb_ID9156 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_1131_rc REXdb_ID6146 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGAA (tRNA-Asp) - not tested Cclementina182_1132_rc REXdb_ID6228 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1135_rc REXdb_ID6225 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1138_rc REXdb_ID9135 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_114 REXdb_ID115 Ty1/copia_CL333 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Cclementina182_1140_rc REXdb_ID116 Ty1/copia_CL480 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_1141 REXdb_ID13194 Ty3/gypsy_CL075 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTGA (tRNA-Thr) - not tested Cclementina182_1142_rc REXdb_ID117 Ty1/copia_CL332 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_1143 REXdb_ID12186 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_1145 REXdb_ID9391 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1146_rc REXdb_ID6047 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1149 REXdb_ID2705 Ty1/copia_CL192 (5) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Cclementina182_115_rc REXdb_ID4655 Ty1/copia_CL097 (9) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 4 - - not tested Cclementina182_1155 REXdb_ID118 Ty1/copia_CL076 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Cclementina182_1160 REXdb_ID4964 Ty1/copia_CL113 (8) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTGGT (tRNA-Met) - not tested Cclementina182_1161 REXdb_ID3115 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Cclementina182_1162 REXdb_ID4965 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_1163 REXdb_ID9152 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_1164_rc REXdb_ID6058 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1165 REXdb_ID13269 Ty3/gypsy_CL101 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGACAGGT (tRNA-Met) - not tested Cclementina182_1166_rc REXdb_ID11771 Ty3/gypsy_CL054 (20) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Cclementina182_1168 REXdb_ID9151 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_1169 REXdb_ID6030 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_117 REXdb_ID119 Ty1/copia_CL154 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Cclementina182_1170 REXdb_ID6070 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1171 REXdb_ID9157 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_1174_rc REXdb_ID6040 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGATTG (tRNA-Asp) - not tested Cclementina182_1175 REXdb_ID120 Ty1/copia_CL260 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGGT (tRNA-Met) - not tested Cclementina182_1176 REXdb_ID9140 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_1177_rc REXdb_ID9385 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - + not tested not tested 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1180_rc REXdb_ID9136 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - + not tested not tested 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_1184 REXdb_ID6571 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Cclementina182_1185 REXdb_ID9149 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_1186_rc REXdb_ID1802 Ty1/copia_CL053 (17) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_1189 REXdb_ID9360 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1190_rc REXdb_ID4018 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_1191_rc REXdb_ID4019 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_1194 REXdb_ID9153 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1198 REXdb_ID121 Ty1/copia_CL077 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Cclementina182_12 REXdb_ID4966 Ty1/copia_CL481 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAAGCCTGGTTTC (tRNA-Met) - not tested Cclementina182_1200_rc REXdb_ID4656 Ty1/copia_CL114 (8) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 4 - - not tested Cclementina182_1202_rc REXdb_ID9166 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_1207_rc REXdb_ID122 Ty1/copia_CL036 (24) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_1213 REXdb_ID6013 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1214_rc REXdb_ID9163 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_1215 REXdb_ID13418 Ty3/gypsy_CL209 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTGAGAT (tRNA-Thr) - not tested Cclementina182_1216 REXdb_ID6038 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGATTG (tRNA-Asp) - not tested Cclementina182_1217 REXdb_ID6083 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1218_rc REXdb_ID3116 Ty1/copia_CL261 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_1219_rc REXdb_ID13202 Ty3/gypsy_CL075 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTGA (tRNA-Thr) - not tested Cclementina182_122 REXdb_ID1854 Ty1/copia_CL057 (15) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 - - not tested Cclementina182_1220_rc REXdb_ID123 Ty1/copia_CL193 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Cclementina182_1222_rc REXdb_ID124 Ty1/copia_CL194 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Cclementina182_1223 REXdb_ID4657 Ty1/copia_CL069 (13) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTTAAGGTTTTATT not tested Cclementina182_1224_rc REXdb_ID9139 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_1225_rc REXdb_ID12196 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_1226 REXdb_ID125 Ty1/copia_CL195 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Cclementina182_1227 REXdb_ID9386 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1229 REXdb_ID9167 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_123_rc REXdb_ID9382 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1230_rc REXdb_ID9131 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Cclementina182_1237_rc REXdb_ID126 Ty1/copia_CL482 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Cclementina182_1238 REXdb_ID4020 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_1239 REXdb_ID9126 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTATGGG (tRNA-Lys) - not tested Cclementina182_1243 REXdb_ID13207 Ty3/gypsy_CL076 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTT (tRNA-Thr) - not tested Cclementina182_1249_rc REXdb_ID4967 Ty1/copia_CL153 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Cclementina182_125_rc REXdb_ID4969 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_1250_rc REXdb_ID4021 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCGA (tRNA-Met) - not tested Cclementina182_1251_rc REXdb_ID4968 Ty1/copia_CL111 (8) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_1256 REXdb_ID1855 Ty1/copia_CL057 (15) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 - - not tested Cclementina182_1258 REXdb_ID127 Ty1/copia_CL262 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAGA (tRNA-Met) - not tested Cclementina182_1259 REXdb_ID9359 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 - - not tested Cclementina182_126_rc REXdb_ID4972 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_1260_rc REXdb_ID4970 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_1261 REXdb_ID9141 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_1262 REXdb_ID4971 Ty1/copia_CL334 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_1263 REXdb_ID128 Ty1/copia_CL335 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAGC (tRNA-Met) - not tested Cclementina182_1265_rc REXdb_ID9176 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - - not tested not tested 5 TGGCACCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1266_rc REXdb_ID2706 Ty1/copia_CL192 (5) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Cclementina182_1269_rc REXdb_ID9182 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - + not tested not tested 4 TGGCGCCGGCTGTGGG (tRNA-Lys) - not tested Cclementina182_1270 REXdb_ID9376 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCTGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1271_rc REXdb_ID129 Ty1/copia_CL259 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Cclementina182_1272 REXdb_ID4022 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_1273_rc REXdb_ID3117 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Cclementina182_1277 REXdb_ID6172 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1278 REXdb_ID6659 Ty3/gypsy_CL123 (7) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGTCGGGGA (tRNA-Asp) - not tested Cclementina182_1279 REXdb_ID9361 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1283_rc REXdb_ID4023 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_1284 REXdb_ID3118 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Cclementina182_1285 REXdb_ID130 Ty1/copia_CL076 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 - - not tested Cclementina182_1287_rc REXdb_ID4024 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_129 REXdb_ID11762 Ty3/gypsy_CL054 (20) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Cclementina182_1290 REXdb_ID4973 Ty1/copia_CL129 (7) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTGTTGGTTG (tRNA-Leu) - not tested Cclementina182_1291_rc REXdb_ID131 Ty1/copia_CL193 (5) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Cclementina182_1292_rc REXdb_ID4974 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_1297_rc REXdb_ID4975 Ty1/copia_CL155 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Cclementina182_1299 REXdb_ID9374 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_13_rc REXdb_ID145 Ty1/copia_CL480 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCCA (tRNA-Met) - not tested Cclementina182_1301 REXdb_ID4976 Ty1/copia_CL129 (7) Class_I::LTR::Ty1/copia::Tork - + + + + - - - - - not tested not tested 5 TGGCAAGCACCAG (tRNA-Glu) - not tested Cclementina182_1302 REXdb_ID6105 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1309_rc REXdb_ID9355 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_131 REXdb_ID132 Ty1/copia_CL194 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Cclementina182_1310 REXdb_ID133 Ty1/copia_CL336 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_1311 REXdb_ID4025 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_1313_rc REXdb_ID134 Ty1/copia_CL195 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Cclementina182_1319 REXdb_ID135 Ty1/copia_CL130 (7) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Cclementina182_132_rc REXdb_ID13196 Ty3/gypsy_CL075 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTGA (tRNA-Thr) - not tested Cclementina182_1324 REXdb_ID136 Ty1/copia_CL337 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Cclementina182_1326 REXdb_ID137 Ty1/copia_CL074 (12) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_1328 REXdb_ID9664 Ty3/gypsy_CL092 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1329_rc REXdb_ID6050 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_133 REXdb_ID138 Ty1/copia_CL077 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGACA (tRNA-Met) - not tested Cclementina182_1330 REXdb_ID4977 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_1331_rc REXdb_ID139 Ty1/copia_CL195 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Cclementina182_1332_rc REXdb_ID9387 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1334 REXdb_ID4978 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_1337_rc REXdb_ID140 Ty1/copia_CL076 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Cclementina182_1338_rc REXdb_ID4979 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_134_rc REXdb_ID6043 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1341 REXdb_ID4980 Ty1/copia_CL155 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Cclementina182_1342_rc REXdb_ID6054 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCACCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1343_rc REXdb_ID4026 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_1344 REXdb_ID6121 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1345 REXdb_ID6188 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCACCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1346 REXdb_ID6147 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1347 REXdb_ID4981 Ty1/copia_CL096 (9) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Cclementina182_1348_rc REXdb_ID4658 Ty1/copia_CL097 (9) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAAACAGA not tested Cclementina182_1351 REXdb_ID4027 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_1353_rc REXdb_ID4982 Ty1/copia_CL258 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_1354_rc REXdb_ID6106 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1356_rc REXdb_ID4983 Ty1/copia_CL156 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTGGT (tRNA-Met) - not tested Cclementina182_1357_rc REXdb_ID6222 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1358_rc REXdb_ID13416 Ty3/gypsy_CL208 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCGGAGGGAA (tRNA-Ser) - not tested Cclementina182_1359 REXdb_ID6189 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGTGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_136_rc REXdb_ID142 Ty1/copia_CL482 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Cclementina182_1363 REXdb_ID13150 Ty3/gypsy_CL063 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGACAGG (tRNA-Met) - not tested Cclementina182_1364 REXdb_ID6056 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1365_rc REXdb_ID6135 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1366_rc REXdb_ID6115 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCTGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1368 REXdb_ID141 Ty1/copia_CL477 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Cclementina182_1369 REXdb_ID6071 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_137_rc REXdb_ID6044 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1370_rc REXdb_ID143 Ty1/copia_CL077 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Cclementina182_1372 REXdb_ID4984 Ty1/copia_CL153 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_1374_rc REXdb_ID6194 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1375_rc REXdb_ID6583 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Cclementina182_1376_rc REXdb_ID9158 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1380_rc REXdb_ID6148 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1381 REXdb_ID4028 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_1382_rc REXdb_ID6248 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1383_rc REXdb_ID6190 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1386 REXdb_ID6091 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1388 REXdb_ID6113 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 - - not tested Cclementina182_1389_rc REXdb_ID4029 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_1390 REXdb_ID6612 Ty3/gypsy_CL074 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 - - not tested Cclementina182_1396 REXdb_ID6266 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1398_rc REXdb_ID144 Ty1/copia_CL130 (7) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Cclementina182_1399 REXdb_ID11604 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Cclementina182_1400 REXdb_ID146 Ty1/copia_CL483 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Cclementina182_1403_rc REXdb_ID9728 Ty3/gypsy_CL210 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - + - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_1405_rc REXdb_ID6051 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1407 REXdb_ID6204 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1408_rc REXdb_ID6088 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1409 REXdb_ID6114 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1411 REXdb_ID6139 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1414 REXdb_ID12195 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_1415_rc REXdb_ID9127 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_1419 REXdb_ID6122 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1421 REXdb_ID9128 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGAGCAAAAAG (tRNA-Gly) - not tested Cclementina182_1425 REXdb_ID3119 Ty1/copia_CL338 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_1426 REXdb_ID4030 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_1429_rc REXdb_ID4985 Ty1/copia_CL096 (9) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Cclementina182_1430 REXdb_ID147 Ty1/copia_CL131 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAAG (tRNA-Ile) - not tested Cclementina182_1431_rc REXdb_ID4986 Ty1/copia_CL110 (8) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Cclementina182_1432_rc REXdb_ID13274 Ty3/gypsy_CL101 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_1433 REXdb_ID13360 Ty3/gypsy_CL167 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCATAGC (tRNA-Met) - not tested Cclementina182_1434_rc REXdb_ID6116 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1435 REXdb_ID6220 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 TGGTGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1436 REXdb_ID4987 Ty1/copia_CL156 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_1437_rc REXdb_ID148 Ty1/copia_CL131 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTGG (tRNA-Met) - not tested Cclementina182_1439 REXdb_ID4988 Ty1/copia_CL484 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_1441_rc REXdb_ID1856 Ty1/copia_CL057 (15) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_1446_rc REXdb_ID9667 Ty3/gypsy_CL092 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1448 REXdb_ID3120 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Cclementina182_1449_rc REXdb_ID6018 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Cclementina182_1450 REXdb_ID4031 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCGAGGT (tRNA-Met) - not tested Cclementina182_1452 REXdb_ID9144 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_1453 REXdb_ID9183 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1454 REXdb_ID3121 Ty1/copia_CL263 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Cclementina182_1455 REXdb_ID149 Ty1/copia_CL076 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Cclementina182_1459 REXdb_ID12315 Ty3/gypsy_CL412 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCCA (tRNA-Met) - not tested Cclementina182_1460_rc REXdb_ID4989 Ty1/copia_CL155 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Cclementina182_1461_rc REXdb_ID4990 Ty1/copia_CL111 (8) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGACC (tRNA-Met) - not tested Cclementina182_1462 REXdb_ID13618 Ty3/gypsy_CL413 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Cclementina182_1464_rc REXdb_ID9154 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_1466_rc REXdb_ID4991 Ty1/copia_CL096 (9) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Cclementina182_1468_rc REXdb_ID11767 Ty3/gypsy_CL054 (20) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Cclementina182_1469_rc REXdb_ID4992 Ty1/copia_CL153 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_147 REXdb_ID6235 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1470 REXdb_ID9172 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCACCGTTTGTGGG (tRNA-Lys) - not tested Cclementina182_1472_rc REXdb_ID150 Ty1/copia_CL112 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGA (tRNA-Met) - not tested Cclementina182_1473_rc REXdb_ID151 Ty1/copia_CL193 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTGTTAGAGC (tRNA-?) - not tested Cclementina182_1475_rc REXdb_ID152 Ty1/copia_CL115 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Cclementina182_1478_rc REXdb_ID6034 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1479 REXdb_ID4659 Ty1/copia_CL069 (13) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTTAAGGTTTTATTT not tested Cclementina182_1480 REXdb_ID4660 Ty1/copia_CL114 (8) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAGACGTTATTT not tested Cclementina182_1481 REXdb_ID153 Ty1/copia_CL331 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Cclementina182_1482 REXdb_ID9729 Ty3/gypsy_CL210 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_1485_rc REXdb_ID4993 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_1486_rc REXdb_ID6661 Ty3/gypsy_CL123 (7) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Cclementina182_1488 REXdb_ID6180 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGTCGGGGA (tRNA-Asp) - not tested Cclementina182_149_rc REXdb_ID6226 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1490 REXdb_ID154 Ty1/copia_CL115 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Cclementina182_1493 REXdb_ID4661 Ty1/copia_CL114 (8) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAGACGTTATTT not tested Cclementina182_1494 REXdb_ID155 Ty1/copia_CL077 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Cclementina182_1495 REXdb_ID6572 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Cclementina182_1497 REXdb_ID9125 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1498_rc REXdb_ID6035 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1499_rc REXdb_ID6608 Ty3/gypsy_CL074 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGTCGGGGAT (tRNA-Asp) - not tested Cclementina182_150 REXdb_ID6026 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1500_rc REXdb_ID4994 Ty1/copia_CL339 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTAGCAGAGCC (tRNA-Met) - not tested Cclementina182_1501_rc REXdb_ID4032 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_1503 REXdb_ID11764 Ty3/gypsy_CL054 (20) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Cclementina182_1504_rc REXdb_ID6229 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1506 REXdb_ID6014 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1507_rc REXdb_ID4662 Ty1/copia_CL069 (13) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTTAAGGTTTTA not tested Cclementina182_1508 REXdb_ID6036 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1509 REXdb_ID4033 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTGCTCTTATTTAGA (tRNA-Thr) - not tested Cclementina182_151_rc REXdb_ID6019 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1512_rc REXdb_ID13154 Ty3/gypsy_CL063 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGACAGG (tRNA-Met) - not tested Cclementina182_1513_rc REXdb_ID156 Ty1/copia_CL130 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Cclementina182_1515_rc REXdb_ID12202 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_1517_rc REXdb_ID4663 Ty1/copia_CL114 (8) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAGACGTTATTT not tested Cclementina182_152_rc REXdb_ID6128 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1520_rc REXdb_ID6187 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1521 REXdb_ID157 Ty1/copia_CL076 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Cclementina182_1524 REXdb_ID158 Ty1/copia_CL098 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCCT (tRNA-Met) - not tested Cclementina182_1525 REXdb_ID9362 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1527_rc REXdb_ID6649 Ty3/gypsy_CL112 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGTCATTTAT (tRNA-Asn) - not tested Cclementina182_1529 REXdb_ID6606 Ty3/gypsy_CL074 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGTCGTTGCCGGGGATTGA (tRNA-Asp) - not tested Cclementina182_1530_rc REXdb_ID1857 Ty1/copia_CL057 (15) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Cclementina182_1531_rc REXdb_ID6574 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Cclementina182_1532_rc REXdb_ID159 Ty1/copia_CL332 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCCTAG (tRNA-Met) - not tested Cclementina182_1533 REXdb_ID6153 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila - + + + + - - - - - not tested not tested 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1534_rc REXdb_ID4034 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_1536 REXdb_ID6065 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1537_rc REXdb_ID4995 Ty1/copia_CL340 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATGAGAGC (tRNA-Met) - not tested Cclementina182_1540_rc REXdb_ID6099 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1542_rc REXdb_ID4996 Ty1/copia_CL341 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_1544 REXdb_ID6140 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1548_rc REXdb_ID6255 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1550_rc REXdb_ID6136 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1551_rc REXdb_ID4997 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAAGCTA (tRNA-Met) - not tested Cclementina182_1553_rc REXdb_ID4035 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 - - not tested Cclementina182_1554 REXdb_ID6048 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1555 REXdb_ID6094 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1557 REXdb_ID6084 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1558 REXdb_ID13203 Ty3/gypsy_CL075 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTG (tRNA-Thr) - not tested Cclementina182_1559 REXdb_ID6609 Ty3/gypsy_CL074 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 TGGCGCCGTTGCTGGGGATTGA (tRNA-Tyr) - not tested Cclementina182_156_rc REXdb_ID4998 Ty1/copia_CL111 (8) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTGTCAGAGCTCA (tRNA-Val) - not tested Cclementina182_1561_rc REXdb_ID13038 Ty3/gypsy_CL211 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Cclementina182_1564 REXdb_ID6181 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1565 REXdb_ID6613 Ty3/gypsy_CL074 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 - - not tested Cclementina182_1569_rc REXdb_ID6208 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1570 REXdb_ID4036 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_1572_rc REXdb_ID6191 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGTCGTTGTCGGGGA (tRNA-Asp) - not tested Cclementina182_1573 REXdb_ID6577 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 - - not tested Cclementina182_1574 REXdb_ID6254 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 - - not tested Cclementina182_1575_rc REXdb_ID1858 Ty1/copia_CL485 (2) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Cclementina182_1578_rc REXdb_ID11755 Ty3/gypsy_CL054 (20) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Cclementina182_1580_rc REXdb_ID4037 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATTAGAGCGAGGT (tRNA-Met) - not tested Cclementina182_1582 REXdb_ID9132 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Cclementina182_1583_rc REXdb_ID12188 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_1584_rc REXdb_ID12192 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_1586 REXdb_ID1859 Ty1/copia_CL057 (15) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Cclementina182_1589 REXdb_ID4999 Ty1/copia_CL110 (8) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAAC (tRNA-Met) - not tested Cclementina182_1592 REXdb_ID6580 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 - - not tested Cclementina182_1593 REXdb_ID5000 Ty1/copia_CL113 (8) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTGGT (tRNA-Met) - not tested Cclementina182_1597 REXdb_ID6072 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGA (tRNA-Asp) - not tested Cclementina182_1598 REXdb_ID6581 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGTCGTTACCGGGGA (tRNA-Asp) - not tested Cclementina182_1599_rc REXdb_ID13362 Ty3/gypsy_CL167 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_16 REXdb_ID9145 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_160_rc REXdb_ID13037 Ty3/gypsy_CL211 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Cclementina182_1601 REXdb_ID6045 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1602_rc REXdb_ID6233 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1606 REXdb_ID13162 Ty3/gypsy_CL063 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCGAGGTT (tRNA-Met) - not tested Cclementina182_161 REXdb_ID6183 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1610_rc REXdb_ID4038 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATGAGAGCAAGGT (tRNA-Met) - not tested Cclementina182_1611 REXdb_ID9389 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1612_rc REXdb_ID5001 Ty1/copia_CL340 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAGA (tRNA-Met) - not tested Cclementina182_1613 REXdb_ID6650 Ty3/gypsy_CL112 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGTGTCATTTAT (tRNA-Asn) - not tested Cclementina182_1614 REXdb_ID12191 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_1617_rc REXdb_ID12193 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_1618 REXdb_ID5002 Ty1/copia_CL155 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Cclementina182_1619 REXdb_ID13420 Ty3/gypsy_CL209 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina - + + + + - + - - - not tested not tested 5 TGGTGCTTTCGTTGAGAG (tRNA-Thr) - not tested Cclementina182_1621_rc REXdb_ID13214 Ty3/gypsy_CL076 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTG (tRNA-Thr) - not tested Cclementina182_1622_rc REXdb_ID6085 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1623_rc REXdb_ID9358 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_1624_rc REXdb_ID2707 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Cclementina182_1625 REXdb_ID5003 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_1626 REXdb_ID3122 Ty1/copia_CL261 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_1627 REXdb_ID11769 Ty3/gypsy_CL054 (20) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Cclementina182_1628_rc REXdb_ID13358 Ty3/gypsy_CL166 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTG (tRNA-Thr) - not tested Cclementina182_1629_rc REXdb_ID6245 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1632_rc REXdb_ID5004 Ty1/copia_CL156 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_1635 REXdb_ID5005 Ty1/copia_CL113 (8) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Cclementina182_1638 REXdb_ID160 Ty1/copia_CL130 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Cclementina182_1639_rc REXdb_ID9364 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_164_rc REXdb_ID11605 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Cclementina182_1640_rc REXdb_ID161 Ty1/copia_CL154 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Cclementina182_1642 REXdb_ID9122 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Cclementina182_1643_rc REXdb_ID13212 Ty3/gypsy_CL076 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTG (tRNA-Thr) - not tested Cclementina182_1644_rc REXdb_ID6077 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1645_rc REXdb_ID5006 Ty1/copia_CL096 (9) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Cclementina182_1646 REXdb_ID6095 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1649 REXdb_ID6212 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_165 REXdb_ID4039 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGGCT (tRNA-Met) - not tested Cclementina182_1650_rc REXdb_ID162 Ty1/copia_CL131 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Cclementina182_1655 REXdb_ID11756 Ty3/gypsy_CL054 (20) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Cclementina182_1657 REXdb_ID5007 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_1658_rc REXdb_ID5008 Ty1/copia_CL191 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_1659_rc REXdb_ID6100 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_1660 REXdb_ID12216 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_1662_rc REXdb_ID6037 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGATTG (tRNA-Asp) - not tested Cclementina182_1664_rc REXdb_ID9129 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Cclementina182_167 REXdb_ID9371 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_168_rc REXdb_ID6654 Ty3/gypsy_CL112 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCCGGGAT (tRNA-Asp) - not tested Cclementina182_1689 REXdb_ID2708 Ty1/copia_CL192 (5) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 4 - - not tested Cclementina182_169 REXdb_ID6607 Ty3/gypsy_CL074 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGATTGA (tRNA-Asp) - not tested Cclementina182_171_rc REXdb_ID6149 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGTCGGGGA (tRNA-Asp) - not tested Cclementina182_173_rc REXdb_ID13163 Ty3/gypsy_CL063 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Cclementina182_174_rc REXdb_ID4040 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_175 REXdb_ID1860 Ty1/copia_CL057 (15) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_176 REXdb_ID163 Ty1/copia_CL342 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_177 REXdb_ID4664 Ty1/copia_CL069 (13) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTTAAGGTTTTATTT not tested Cclementina182_187_rc REXdb_ID164 Ty1/copia_CL335 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAGC (tRNA-Met) - not tested Cclementina182_19_rc REXdb_ID5010 Ty1/copia_CL096 (9) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Cclementina182_195_rc REXdb_ID5009 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_196 REXdb_ID9388 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTATGGG (tRNA-Lys) - not tested Cclementina182_199_rc REXdb_ID4665 Ty1/copia_CL069 (13) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - TTTAAGGTTTTATTT not tested Cclementina182_2 REXdb_ID9730 Ty3/gypsy_CL210 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_20_rc REXdb_ID5012 Ty1/copia_CL063 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Cclementina182_202 REXdb_ID5011 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_205 REXdb_ID9179 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTG (tRNA-Lys) - not tested Cclementina182_206 REXdb_ID13276 Ty3/gypsy_CL101 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_207 REXdb_ID1803 Ty1/copia_CL053 (17) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_208_rc REXdb_ID9171 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - + not tested not tested 5 TGGCACCGTCTGTG (tRNA-Lys) - not tested Cclementina182_209_rc REXdb_ID165 Ty1/copia_CL486 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGCATTGTCAA (tRNA-Lys) - not tested Cclementina182_21_rc REXdb_ID4666 Ty1/copia_CL097 (9) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAAACAGA not tested Cclementina182_210 REXdb_ID9368 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_211_rc REXdb_ID13273 Ty3/gypsy_CL101 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAGGTTA (tRNA-Met) - not tested Cclementina182_212_rc REXdb_ID9164 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + not tested not tested 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_213_rc REXdb_ID11759 Ty3/gypsy_CL054 (20) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Cclementina182_214_rc REXdb_ID166 Ty1/copia_CL343 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_215_rc REXdb_ID167 Ty1/copia_CL077 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Cclementina182_216 REXdb_ID11758 Ty3/gypsy_CL054 (20) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Cclementina182_217 REXdb_ID6027 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_218 REXdb_ID168 Ty1/copia_CL076 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAGT (tRNA-Met) - not tested Cclementina182_219_rc REXdb_ID4041 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 - - not tested Cclementina182_22_rc REXdb_ID170 Ty1/copia_CL115 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Cclementina182_220_rc REXdb_ID4042 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGACC (tRNA-Met) - not tested Cclementina182_221_rc REXdb_ID6101 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_222_rc REXdb_ID169 Ty1/copia_CL333 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Cclementina182_226 REXdb_ID13213 Ty3/gypsy_CL076 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTG (tRNA-Thr) - not tested Cclementina182_228 REXdb_ID6206 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_229 REXdb_ID9142 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_230 REXdb_ID6240 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_231_rc REXdb_ID9370 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCACCGTCTGTGGGGAT (tRNA-Lys) - not tested Cclementina182_236 REXdb_ID1861 Ty1/copia_CL057 (15) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Cclementina182_237_rc REXdb_ID6073 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila - + + + + - - - - - not tested not tested 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_239 REXdb_ID6195 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_240 REXdb_ID6169 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_242 REXdb_ID9143 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_244 REXdb_ID6107 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_245_rc REXdb_ID6611 Ty3/gypsy_CL074 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCTGGGGATTGAA (tRNA-Tyr) - not tested Cclementina182_246_rc REXdb_ID171 Ty1/copia_CL112 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_248 REXdb_ID6154 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_249 REXdb_ID6123 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_25_rc REXdb_ID5013 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_252_rc REXdb_ID6089 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_253_rc REXdb_ID6142 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_255_rc REXdb_ID6170 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_256 REXdb_ID6253 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 - - not tested Cclementina182_257_rc REXdb_ID6159 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCTGGGGA (tRNA-Asp) - not tested Cclementina182_258 REXdb_ID6129 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_259_rc REXdb_ID6241 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCTCCGTTGCCGGGGA (tRNA-Glu) - not tested Cclementina182_26 REXdb_ID172 Ty1/copia_CL336 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_260_rc REXdb_ID6165 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_262 REXdb_ID6032 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_263 REXdb_ID6160 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_265_rc REXdb_ID4043 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_267_rc REXdb_ID6192 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_268 REXdb_ID6137 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_27_rc REXdb_ID6078 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_270_rc REXdb_ID6252 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 - - not tested Cclementina182_272_rc REXdb_ID6155 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_273 REXdb_ID4044 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCAAGGT (tRNA-Met) - not tested Cclementina182_274_rc REXdb_ID9665 Ty3/gypsy_CL092 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_275_rc REXdb_ID6198 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCACCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_278 REXdb_ID6059 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Cclementina182_279_rc REXdb_ID4045 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAAC (tRNA-Met) - not tested Cclementina182_28 REXdb_ID4046 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 - - not tested Cclementina182_282 REXdb_ID173 Ty1/copia_CL483 (2) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Cclementina182_284_rc REXdb_ID6205 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_285 REXdb_ID6174 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_286_rc REXdb_ID6117 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_287_rc REXdb_ID9670 Ty3/gypsy_CL092 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_288_rc REXdb_ID6272 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_289_rc REXdb_ID174 Ty1/copia_CL344 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCAATG (tRNA-Met) - not tested Cclementina182_291 REXdb_ID6651 Ty3/gypsy_CL112 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGTGTCATTTAT (tRNA-Asn) - not tested Cclementina182_292 REXdb_ID12213 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGTTA (tRNA-Met) - not tested Cclementina182_293 REXdb_ID6060 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_294_rc REXdb_ID5014 Ty1/copia_CL113 (8) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTGGT (tRNA-Met) - not tested Cclementina182_295_rc REXdb_ID6224 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_296 REXdb_ID6249 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 - - not tested Cclementina182_298_rc REXdb_ID13156 Ty3/gypsy_CL063 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_299_rc REXdb_ID175 Ty1/copia_CL194 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Cclementina182_3 REXdb_ID5015 Ty1/copia_CL341 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAAGCCT (tRNA-Met) - not tested Cclementina182_30_rc REXdb_ID1862 Ty1/copia_CL057 (15) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCTGAGA (tRNA-?) - not tested Cclementina182_300_rc REXdb_ID3123 Ty1/copia_CL261 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 - - not tested Cclementina182_301 REXdb_ID5016 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_303 REXdb_ID3124 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Cclementina182_305 REXdb_ID3125 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCACAGC (tRNA-Met) - not tested Cclementina182_307_rc REXdb_ID6605 Ty3/gypsy_CL074 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCAGGGGAT (tRNA-Asp) - not tested Cclementina182_308_rc REXdb_ID5017 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_310 REXdb_ID2709 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_312_rc REXdb_ID176 Ty1/copia_CL115 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Cclementina182_314 REXdb_ID4667 Ty1/copia_CL069 (13) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTTAAGGTTTTATTTG not tested Cclementina182_317_rc REXdb_ID6130 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 4 TGGCGTCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_319 REXdb_ID6102 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_321 REXdb_ID9390 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Cclementina182_322_rc REXdb_ID5018 Ty1/copia_CL110 (8) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Cclementina182_323_rc REXdb_ID13158 Ty3/gypsy_CL063 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCGAGGTT (tRNA-Met) - not tested Cclementina182_325_rc REXdb_ID9159 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_326 REXdb_ID1804 Ty1/copia_CL053 (17) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_328 REXdb_ID11937 Ty3/gypsy_CL274 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 6 TGGTATCAGAGCCAGGTTC (tRNA-Met) - not tested Cclementina182_33_rc REXdb_ID9162 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_336 REXdb_ID9663 Ty3/gypsy_CL092 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_337_rc REXdb_ID5019 Ty1/copia_CL110 (8) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_338 REXdb_ID4047 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_339 REXdb_ID9668 Ty3/gypsy_CL092 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_34 REXdb_ID6141 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_340 REXdb_ID9150 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_342 REXdb_ID9160 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_343_rc REXdb_ID6265 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Cclementina182_344 REXdb_ID12197 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_346 REXdb_ID5020 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_347 REXdb_ID5021 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_35_rc REXdb_ID5023 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_350_rc REXdb_ID12212 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_351 REXdb_ID5022 Ty1/copia_CL096 (9) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Cclementina182_352 REXdb_ID6267 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGATTG (tRNA-Asp) - not tested Cclementina182_354 REXdb_ID13085 Ty3/gypsy_CL414 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Cclementina182_355_rc REXdb_ID6217 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAAGGA (tRNA-Asn) - not tested Cclementina182_357 REXdb_ID6263 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_358_rc REXdb_ID9377 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_359_rc REXdb_ID6061 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_360 REXdb_ID177 Ty1/copia_CL333 (3) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 - - not tested Cclementina182_361_rc REXdb_ID4668 Ty1/copia_CL069 (13) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTTAAGGTTTTA not tested Cclementina182_362 REXdb_ID12206 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_363 REXdb_ID6092 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_366_rc REXdb_ID5024 Ty1/copia_CL339 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Cclementina182_368 REXdb_ID178 Ty1/copia_CL345 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Cclementina182_371 REXdb_ID179 Ty1/copia_CL345 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Cclementina182_372 REXdb_ID180 Ty1/copia_CL115 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Cclementina182_373_rc REXdb_ID6097 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_378 REXdb_ID4669 Ty1/copia_CL114 (8) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAGACGTTATTT not tested Cclementina182_379_rc REXdb_ID13206 Ty3/gypsy_CL075 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTG (tRNA-Thr) - not tested Cclementina182_38_rc REXdb_ID5026 Ty1/copia_CL157 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_380 REXdb_ID2710 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Cclementina182_381_rc REXdb_ID4048 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_382 REXdb_ID4670 Ty1/copia_CL097 (9) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAAACAGATT not tested Cclementina182_383 REXdb_ID13619 Ty3/gypsy_CL415 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_385 REXdb_ID5025 Ty1/copia_CL264 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Cclementina182_388_rc REXdb_ID4049 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 6 - - not tested Cclementina182_389 REXdb_ID6230 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila - + + + + - - - - - not tested not tested 5 - - not tested Cclementina182_390_rc REXdb_ID1863 Ty1/copia_CL057 (15) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Cclementina182_392 REXdb_ID4050 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_393 REXdb_ID6022 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_394_rc REXdb_ID4051 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_398_rc REXdb_ID6161 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_4 REXdb_ID5027 Ty1/copia_CL157 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_40 REXdb_ID6227 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_400 REXdb_ID4052 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATTAGAGCAA (tRNA-Met) - not tested Cclementina182_401_rc REXdb_ID6093 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCTGGGGA (tRNA-Asp) - not tested Cclementina182_403_rc REXdb_ID6096 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_404_rc REXdb_ID12190 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_405_rc REXdb_ID4053 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTGCTCTTATTTAGA (tRNA-Thr) - not tested Cclementina182_407 REXdb_ID1864 Ty1/copia_CL057 (15) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Cclementina182_408_rc REXdb_ID6184 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_410 REXdb_ID181 Ty1/copia_CL076 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCCAGAT (tRNA-Met) - not tested Cclementina182_411 REXdb_ID6157 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_412 REXdb_ID6162 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_413 REXdb_ID6209 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_414_rc REXdb_ID9401 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCACCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_415 REXdb_ID9354 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_416_rc REXdb_ID4054 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 4 TGGTATCAGAGCGAGGT (tRNA-Met) - not tested Cclementina182_419 REXdb_ID6132 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_42_rc REXdb_ID6176 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_420_rc REXdb_ID182 Ty1/copia_CL112 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_424_rc REXdb_ID13208 Ty3/gypsy_CL076 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTT (tRNA-Thr) - not tested Cclementina182_425 REXdb_ID183 Ty1/copia_CL343 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Cclementina182_427 REXdb_ID11757 Ty3/gypsy_CL054 (20) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Cclementina182_428_rc REXdb_ID4055 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - + - not tested not tested 5 TGGTATCAGAGCGAGGT (tRNA-Met) - not tested Cclementina182_429 REXdb_ID9399 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_430 REXdb_ID184 Ty1/copia_CL194 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Cclementina182_431_rc REXdb_ID5028 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork - + + + + - - - - - not tested not tested 5 TGGGGTCAAGAA (tRNA-Leu) - not tested Cclementina182_433 REXdb_ID5029 Ty1/copia_CL334 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_434_rc REXdb_ID5030 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_435_rc REXdb_ID2711 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_436 REXdb_ID13620 Ty3/gypsy_CL416 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCAAGG (tRNA-Met) - not tested Cclementina182_438 REXdb_ID5031 Ty1/copia_CL157 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_439 REXdb_ID6185 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_44_rc REXdb_ID185 Ty1/copia_CL076 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAGT (tRNA-Met) - not tested Cclementina182_440 REXdb_ID6166 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_443 REXdb_ID13160 Ty3/gypsy_CL063 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCGAGGTT (tRNA-Met) - not tested Cclementina182_444 REXdb_ID5032 Ty1/copia_CL258 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_447 REXdb_ID1805 Ty1/copia_CL053 (17) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_448 REXdb_ID6648 Ty3/gypsy_CL112 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGTGTCATTTAT (tRNA-Asn) - not tested Cclementina182_45_rc REXdb_ID5035 Ty1/copia_CL157 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_450 REXdb_ID5033 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_451 REXdb_ID5034 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_452 REXdb_ID186 Ty1/copia_CL077 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Cclementina182_456 REXdb_ID13197 Ty3/gypsy_CL075 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Cclementina182_457 REXdb_ID6110 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_458_rc REXdb_ID6150 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_459 REXdb_ID2712 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Cclementina182_46 REXdb_ID4056 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_460_rc REXdb_ID9178 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCACCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_462 REXdb_ID6144 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_466 REXdb_ID9180 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_467 REXdb_ID187 Ty1/copia_CL077 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Cclementina182_468_rc REXdb_ID6020 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_469_rc REXdb_ID6186 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_47 REXdb_ID4057 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCAAGGT (tRNA-Met) - not tested Cclementina182_470_rc REXdb_ID6118 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGTGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_474_rc REXdb_ID6173 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_475 REXdb_ID9369 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Cclementina182_476 REXdb_ID188 Ty1/copia_CL479 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Cclementina182_477_rc REXdb_ID9170 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_478_rc REXdb_ID4671 Ty1/copia_CL114 (8) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAGACGTTATTT not tested Cclementina182_479 REXdb_ID5036 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_48_rc REXdb_ID6250 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_480 REXdb_ID5037 Ty1/copia_CL264 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAAGCCT (tRNA-Met) - not tested Cclementina182_482_rc REXdb_ID6103 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_483 REXdb_ID5038 Ty1/copia_CL113 (8) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTGGT (tRNA-Met) - not tested Cclementina182_485_rc REXdb_ID189 Ty1/copia_CL335 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAGC (tRNA-Met) - not tested Cclementina182_487 REXdb_ID190 Ty1/copia_CL077 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Cclementina182_488_rc REXdb_ID191 Ty1/copia_CL260 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAAAAACAGC (tRNA-Ile) - not tested Cclementina182_49 REXdb_ID13161 Ty3/gypsy_CL063 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_491_rc REXdb_ID13215 Ty3/gypsy_CL076 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTG (tRNA-Thr) - not tested Cclementina182_492_rc REXdb_ID5039 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_5 REXdb_ID9168 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - - not tested not tested 5 TGGCGCCGTCTGTGGAGA (tRNA-Lys) - not tested Cclementina182_50_rc REXdb_ID13287 Ty3/gypsy_CL122 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_502_rc REXdb_ID5040 Ty1/copia_CL487 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Cclementina182_503_rc REXdb_ID13417 Ty3/gypsy_CL208 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATTAGAGCA (tRNA-Met) - not tested Cclementina182_504_rc REXdb_ID1806 Ty1/copia_CL053 (17) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_507 REXdb_ID6028 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_509 REXdb_ID5041 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_510 REXdb_ID6015 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_511_rc REXdb_ID5042 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_513_rc REXdb_ID12198 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_514_rc REXdb_ID3126 Ty1/copia_CL261 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_515_rc REXdb_ID6657 Ty3/gypsy_CL123 (7) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Cclementina182_516 REXdb_ID4058 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_517 REXdb_ID6662 Ty3/gypsy_CL136 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGATTG (tRNA-Asp) - not tested Cclementina182_518 REXdb_ID5043 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_522_rc REXdb_ID9165 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_525_rc REXdb_ID6614 Ty3/gypsy_CL074 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 4 TGGCGCCGTTGCCGGAGAT (tRNA-Asp) - not tested Cclementina182_526_rc REXdb_ID5044 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_527_rc REXdb_ID5045 Ty1/copia_CL111 (8) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_529_rc REXdb_ID5046 Ty1/copia_CL129 (7) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTGGT (tRNA-Met) - not tested Cclementina182_530 REXdb_ID192 Ty1/copia_CL154 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Cclementina182_534_rc REXdb_ID5047 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_535 REXdb_ID5048 Ty1/copia_CL155 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_537_rc REXdb_ID13152 Ty3/gypsy_CL063 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGACAGG (tRNA-Met) - not tested Cclementina182_540 REXdb_ID5049 Ty1/copia_CL129 (7) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCAAGCACCAG (tRNA-Glu) - not tested Cclementina182_541_rc REXdb_ID9669 Ty3/gypsy_CL092 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_544 REXdb_ID4059 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 4 TGGTATCAGAGAC (tRNA-Met) - not tested Cclementina182_546 REXdb_ID193 Ty1/copia_CL077 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Cclementina182_548 REXdb_ID5050 Ty1/copia_CL063 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Cclementina182_55 REXdb_ID6598 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGTCTTTAC (tRNA-His) - not tested Cclementina182_550 REXdb_ID6653 Ty3/gypsy_CL112 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGTGTCATTTAT (tRNA-Asn) - not tested Cclementina182_553_rc REXdb_ID6199 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_557_rc REXdb_ID9666 Ty3/gypsy_CL092 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_559 REXdb_ID194 Ty1/copia_CL112 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGA (tRNA-Met) - not tested Cclementina182_56_rc REXdb_ID4061 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_561 REXdb_ID6234 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_562 REXdb_ID4060 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCGAGGT (tRNA-Met) - not tested Cclementina182_564_rc REXdb_ID5051 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_569_rc REXdb_ID6200 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_571_rc REXdb_ID4672 Ty1/copia_CL097 (9) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAAACAGA not tested Cclementina182_576_rc REXdb_ID6257 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 - - not tested Cclementina182_577 REXdb_ID6042 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_579 REXdb_ID9392 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_58 REXdb_ID6579 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCTGTTGCCGGGGAA (tRNA-Asp) - not tested Cclementina182_581_rc REXdb_ID195 Ty1/copia_CL486 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_582_rc REXdb_ID1865 Ty1/copia_CL057 (15) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Cclementina182_583_rc REXdb_ID13195 Ty3/gypsy_CL075 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTGA (tRNA-Thr) - not tested Cclementina182_584 REXdb_ID9175 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_585 REXdb_ID196 Ty1/copia_CL036 (24) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_586 REXdb_ID5052 Ty1/copia_CL484 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_587 REXdb_ID197 Ty1/copia_CL344 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAGGTTTTGAT (tRNA-Met) - not tested Cclementina182_588_rc REXdb_ID198 Ty1/copia_CL336 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGA (tRNA-Met) - not tested Cclementina182_589_rc REXdb_ID199 Ty1/copia_CL345 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGACG (tRNA-Leu) - not tested Cclementina182_590_rc REXdb_ID5053 Ty1/copia_CL111 (8) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_591 REXdb_ID9161 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_592 REXdb_ID6108 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_593_rc REXdb_ID200 Ty1/copia_CL076 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Cclementina182_594_rc REXdb_ID9363 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_595_rc REXdb_ID201 Ty1/copia_CL058 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Cclementina182_597 REXdb_ID5054 Ty1/copia_CL153 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_6_rc REXdb_ID12194 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_600_rc REXdb_ID6074 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_601_rc REXdb_ID202 Ty1/copia_CL346 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_602_rc REXdb_ID203 Ty1/copia_CL343 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_603 REXdb_ID204 Ty1/copia_CL154 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Cclementina182_604_rc REXdb_ID5055 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_605 REXdb_ID13357 Ty3/gypsy_CL166 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTG (tRNA-Thr) - not tested Cclementina182_607_rc REXdb_ID205 Ty1/copia_CL131 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Cclementina182_608_rc REXdb_ID5056 Ty1/copia_CL334 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCAAACCCAA (tRNA-Leu) - not tested Cclementina182_609_rc REXdb_ID4062 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_61 REXdb_ID206 Ty1/copia_CL346 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_613_rc REXdb_ID5057 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAAGCTA (tRNA-Met) - not tested Cclementina182_616 REXdb_ID6578 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGTTGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_617_rc REXdb_ID6075 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_619_rc REXdb_ID6216 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_621 REXdb_ID6057 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_623 REXdb_ID6251 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_625_rc REXdb_ID6090 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_626_rc REXdb_ID207 Ty1/copia_CL130 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Cclementina182_629 REXdb_ID13201 Ty3/gypsy_CL075 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTGA (tRNA-Thr) - not tested Cclementina182_630 REXdb_ID208 Ty1/copia_CL488 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGGTT (tRNA-Met) - not tested Cclementina182_631 REXdb_ID11760 Ty3/gypsy_CL054 (20) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGACA (tRNA-Met) - not tested Cclementina182_632_rc REXdb_ID6573 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Cclementina182_633_rc REXdb_ID6218 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAGGGA (tRNA-Asp) - not tested Cclementina182_634 REXdb_ID6016 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_635 REXdb_ID1866 Ty1/copia_CL057 (15) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGAC (tRNA-Met) - not tested Cclementina182_638 REXdb_ID12203 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_640 REXdb_ID6138 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_641 REXdb_ID6193 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_642_rc REXdb_ID6066 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_643 REXdb_ID6575 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCATTGCCGGGGAA (tRNA-Tyr) - not tested Cclementina182_644 REXdb_ID6151 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_645_rc REXdb_ID6062 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_646 REXdb_ID4063 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCAAGGT (tRNA-Met) - not tested Cclementina182_647 REXdb_ID209 Ty1/copia_CL112 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGA (tRNA-Met) - not tested Cclementina182_648 REXdb_ID6196 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_65_rc REXdb_ID210 Ty1/copia_CL347 (3) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Cclementina182_650_rc REXdb_ID9381 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_651 REXdb_ID6268 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_654_rc REXdb_ID5058 Ty1/copia_CL340 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - not tested not tested - - 5 TGGTATCAGAGCCAGA (tRNA-Met) - not tested Cclementina182_655 REXdb_ID6236 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_658 REXdb_ID6124 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_66 REXdb_ID4064 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_660_rc REXdb_ID6201 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAGGGA (tRNA-Asp) - not tested Cclementina182_661_rc REXdb_ID6067 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_662_rc REXdb_ID5059 Ty1/copia_CL191 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_663 REXdb_ID6271 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCATTGCCGG (tRNA-Asp) - not tested Cclementina182_665 REXdb_ID6068 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_667_rc REXdb_ID211 Ty1/copia_CL131 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Cclementina182_674_rc REXdb_ID6239 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAGGGA (tRNA-Asp) - not tested Cclementina182_675 REXdb_ID212 Ty1/copia_CL346 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATGAGAGC (tRNA-Met) - not tested Cclementina182_676_rc REXdb_ID9137 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_679_rc REXdb_ID5060 Ty1/copia_CL341 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAAGCCT (tRNA-Met) - not tested Cclementina182_68_rc REXdb_ID4673 Ty1/copia_CL114 (8) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAGACGTTATTT not tested Cclementina182_681_rc REXdb_ID6262 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 - - not tested Cclementina182_683_rc REXdb_ID5061 Ty1/copia_CL478 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 - - not tested Cclementina182_684_rc REXdb_ID9365 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_686 REXdb_ID6158 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_687 REXdb_ID2713 Ty1/copia_CL192 (5) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Cclementina182_69_rc REXdb_ID6269 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_690 REXdb_ID6168 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGAGA (tRNA-Asp) - not tested Cclementina182_691_rc REXdb_ID11763 Ty3/gypsy_CL054 (20) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Cclementina182_692 REXdb_ID1867 Ty1/copia_CL057 (15) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_695 REXdb_ID5062 Ty1/copia_CL113 (8) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAGT (tRNA-Met) - not tested Cclementina182_696_rc REXdb_ID5063 Ty1/copia_CL155 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Cclementina182_697 REXdb_ID213 Ty1/copia_CL131 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCTAGG (tRNA-Met) - not tested Cclementina182_698 REXdb_ID4065 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCAAGGT (tRNA-Met) - not tested Cclementina182_699_rc REXdb_ID11772 Ty3/gypsy_CL054 (20) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCGGAGCCAA (tRNA-Met) - not tested Cclementina182_7_rc REXdb_ID11761 Ty3/gypsy_CL054 (20) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Cclementina182_70_rc REXdb_ID6270 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGTCGTTGCTGGGGA (tRNA-Asp) - not tested Cclementina182_705 REXdb_ID214 Ty1/copia_CL342 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_706 REXdb_ID3127 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Cclementina182_707 REXdb_ID13361 Ty3/gypsy_CL167 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_708 REXdb_ID6063 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_709_rc REXdb_ID6261 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 - - not tested Cclementina182_71 REXdb_ID5064 Ty1/copia_CL264 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_711 REXdb_ID6231 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_713_rc REXdb_ID12218 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCGGAGC (tRNA-Met) - not tested Cclementina182_714 REXdb_ID6663 Ty3/gypsy_CL136 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCTCCGTTGCCGGGGAT (tRNA-Glu) - not tested Cclementina182_716_rc REXdb_ID13205 Ty3/gypsy_CL075 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTG (tRNA-Thr) - not tested Cclementina182_719_rc REXdb_ID6576 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Cclementina182_72 REXdb_ID6087 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_720 REXdb_ID5065 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_721_rc REXdb_ID13217 Ty3/gypsy_CL076 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTG (tRNA-Thr) - not tested Cclementina182_722 REXdb_ID215 Ty1/copia_CL260 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAAAAACAGC (tRNA-Ile) - not tested Cclementina182_723_rc REXdb_ID216 Ty1/copia_CL337 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCA (tRNA-Met) - not tested Cclementina182_724_rc REXdb_ID217 Ty1/copia_CL262 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAAGCTCAAG (tRNA-Ile) - not tested Cclementina182_725_rc REXdb_ID5066 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_726 REXdb_ID9378 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_729_rc REXdb_ID5067 Ty1/copia_CL157 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_73_rc REXdb_ID13210 Ty3/gypsy_CL076 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTT (tRNA-Thr) - not tested Cclementina182_730 REXdb_ID11765 Ty3/gypsy_CL054 (20) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Cclementina182_732 REXdb_ID5068 Ty1/copia_CL129 (7) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCAAGCACCAG (tRNA-Glu) - not tested Cclementina182_734_rc REXdb_ID9155 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_735_rc REXdb_ID13419 Ty3/gypsy_CL209 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCGTTGAGAG (tRNA-Thr) - not tested Cclementina182_738 REXdb_ID5069 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_739_rc REXdb_ID218 Ty1/copia_CL337 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Cclementina182_74 REXdb_ID6256 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_740_rc REXdb_ID219 Ty1/copia_CL348 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Cclementina182_744_rc REXdb_ID220 Ty1/copia_CL260 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAAAAACAGC (tRNA-Ile) - not tested Cclementina182_745_rc REXdb_ID221 Ty1/copia_CL130 (7) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Cclementina182_747 REXdb_ID5070 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_749_rc REXdb_ID4674 Ty1/copia_CL659 (1) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - - not tested Cclementina182_75_rc REXdb_ID6182 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_750_rc REXdb_ID5071 Ty1/copia_CL129 (7) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCAAGCACCAG (tRNA-Glu) - not tested Cclementina182_751 REXdb_ID13209 Ty3/gypsy_CL076 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTG (tRNA-Thr) - not tested Cclementina182_753 REXdb_ID222 Ty1/copia_CL331 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Cclementina182_758 REXdb_ID223 Ty1/copia_CL195 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Cclementina182_76_rc REXdb_ID6143 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_761_rc REXdb_ID224 Ty1/copia_CL154 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Cclementina182_762 REXdb_ID4675 Ty1/copia_CL069 (13) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTTAAGGTTTTATTT not tested Cclementina182_766_rc REXdb_ID5072 Ty1/copia_CL156 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_767_rc REXdb_ID5073 Ty1/copia_CL349 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_768_rc REXdb_ID5074 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_772 REXdb_ID225 Ty1/copia_CL036 (24) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_773 REXdb_ID1807 Ty1/copia_CL053 (17) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_774 REXdb_ID226 Ty1/copia_CL195 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Cclementina182_776_rc REXdb_ID13218 Ty3/gypsy_CL076 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTG (tRNA-Thr) - not tested Cclementina182_778_rc REXdb_ID5075 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_78 REXdb_ID6031 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_781_rc REXdb_ID6171 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_784 REXdb_ID12189 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_788_rc REXdb_ID5076 Ty1/copia_CL339 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_79_rc REXdb_ID6109 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_790 REXdb_ID13039 Ty3/gypsy_CL211 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Cclementina182_793 REXdb_ID6210 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_794 REXdb_ID6112 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_796_rc REXdb_ID6246 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAGGGA (tRNA-Asp) - not tested Cclementina182_797 REXdb_ID9366 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_80 REXdb_ID4066 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_801 REXdb_ID6658 Ty3/gypsy_CL123 (7) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila - + + + + - - - - - not tested not tested 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Cclementina182_802_rc REXdb_ID11938 Ty3/gypsy_CL274 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 6 - - not tested Cclementina182_804_rc REXdb_ID3128 Ty1/copia_CL158 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCGAGG (tRNA-Met) - not tested Cclementina182_805 REXdb_ID6264 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGAGGA (tRNA-Asp) - not tested Cclementina182_807 REXdb_ID5077 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_81 REXdb_ID227 Ty1/copia_CL077 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Cclementina182_812 REXdb_ID6111 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_813 REXdb_ID6156 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_815_rc REXdb_ID9124 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_819 REXdb_ID228 Ty1/copia_CL262 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAGA (tRNA-Met) - not tested Cclementina182_821_rc REXdb_ID12200 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_827 REXdb_ID229 Ty1/copia_CL130 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Cclementina182_828_rc REXdb_ID230 Ty1/copia_CL347 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Cclementina182_83 REXdb_ID9177 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_830_rc REXdb_ID6152 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_831_rc REXdb_ID13359 Ty3/gypsy_CL166 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTG (tRNA-Thr) - not tested Cclementina182_832 REXdb_ID9357 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_835_rc REXdb_ID3129 Ty1/copia_CL263 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Cclementina182_838 REXdb_ID4067 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 - - not tested Cclementina182_84_rc REXdb_ID4068 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCAAGGT (tRNA-Met) - not tested Cclementina182_841 REXdb_ID6017 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_842_rc REXdb_ID5078 Ty1/copia_CL156 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTGGT (tRNA-Met) - not tested Cclementina182_845 REXdb_ID6119 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 - - not tested Cclementina182_846 REXdb_ID6120 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_847_rc REXdb_ID6163 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_849_rc REXdb_ID6242 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_85 REXdb_ID9397 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTGCCGTCTGTGGG (tRNA-Lys) - not tested Cclementina182_850_rc REXdb_ID6177 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 - - not tested Cclementina182_852_rc REXdb_ID4069 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_853 REXdb_ID231 Ty1/copia_CL488 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGGTT (tRNA-Met) - not tested Cclementina182_855_rc REXdb_ID6134 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_857_rc REXdb_ID11770 Ty3/gypsy_CL054 (20) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Cclementina182_858 REXdb_ID6258 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCACCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_86 REXdb_ID232 Ty1/copia_CL076 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Cclementina182_860 REXdb_ID6178 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_861_rc REXdb_ID6179 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCTGGGGA (tRNA-Asp) - not tested Cclementina182_863 REXdb_ID6656 Ty3/gypsy_CL123 (7) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAAC (tRNA-Asp) - not tested Cclementina182_867_rc REXdb_ID6243 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCACCGTTACC (tRNA-Asp) - not tested Cclementina182_869 REXdb_ID6023 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_87_rc REXdb_ID233 Ty1/copia_CL194 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Cclementina182_870 REXdb_ID6126 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCTGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_872 REXdb_ID9138 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGAT (tRNA-Lys) - not tested Cclementina182_874 REXdb_ID6214 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_877_rc REXdb_ID5079 Ty1/copia_CL113 (8) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATTAGAGCCTGGT (tRNA-Met) - not tested Cclementina182_878 REXdb_ID5080 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_88_rc REXdb_ID9169 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCATCTGTGGGGATCGAA (tRNA-Lys) - not tested Cclementina182_883_rc REXdb_ID13216 Ty3/gypsy_CL076 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTG (tRNA-Thr) - not tested Cclementina182_885_rc REXdb_ID11768 Ty3/gypsy_CL054 (20) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATTAGAGCCAA (tRNA-Met) - not tested Cclementina182_887 REXdb_ID9384 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - + not tested not tested 5 TGGCGCCGTTTG (tRNA-?) - not tested Cclementina182_889 REXdb_ID9662 Ty3/gypsy_CL092 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_89_rc REXdb_ID9372 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Cclementina182_893 REXdb_ID12204 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_894_rc REXdb_ID1868 Ty1/copia_CL057 (15) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATTATAGC (tRNA-?) - not tested Cclementina182_895_rc REXdb_ID5081 Ty1/copia_CL153 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Cclementina182_897_rc REXdb_ID5082 Ty1/copia_CL487 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCGA (tRNA-Met) - not tested Cclementina182_898 REXdb_ID13153 Ty3/gypsy_CL063 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAGGA (tRNA-Met) - not tested Cclementina182_9 REXdb_ID234 Ty1/copia_CL259 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Cclementina182_90_rc REXdb_ID12217 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_902 REXdb_ID6582 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGAA (tRNA-Asp) - not tested Cclementina182_904 REXdb_ID6237 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_908 REXdb_ID6259 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_91 REXdb_ID9380 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Cclementina182_910_rc REXdb_ID13151 Ty3/gypsy_CL063 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGACAGG (tRNA-Met) - not tested Cclementina182_913_rc REXdb_ID9356 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 4 - - not tested Cclementina182_914 REXdb_ID12205 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGTTA (tRNA-Met) - not tested Cclementina182_915 REXdb_ID4676 Ty1/copia_CL114 (8) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAGACGTTATTT not tested Cclementina182_918_rc REXdb_ID6213 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila - + + + + - - - + - not tested not tested 5 TGGCGCCGCTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_92 REXdb_ID6660 Ty3/gypsy_CL123 (7) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Cclementina182_920_rc REXdb_ID12187 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_921 REXdb_ID6131 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_922 REXdb_ID4070 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGGGAGGT (tRNA-Met) - not tested Cclementina182_923 REXdb_ID5083 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_924 REXdb_ID5084 Ty1/copia_CL096 (9) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Cclementina182_925 REXdb_ID4071 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_927 REXdb_ID6586 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_929_rc REXdb_ID1869 Ty1/copia_CL485 (2) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Cclementina182_930 REXdb_ID235 Ty1/copia_CL348 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Cclementina182_934_rc REXdb_ID1808 Ty1/copia_CL053 (17) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_936_rc REXdb_ID12199 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_937_rc REXdb_ID3130 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Cclementina182_938 REXdb_ID236 Ty1/copia_CL262 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGGGCCA (tRNA-Met) - not tested Cclementina182_939 REXdb_ID12208 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Cclementina182_94 REXdb_ID13204 Ty3/gypsy_CL075 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTGA (tRNA-Thr) - not tested Cclementina182_941 REXdb_ID6064 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_942_rc REXdb_ID237 Ty1/copia_CL131 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTGG (tRNA-Met) - not tested Cclementina182_944 REXdb_ID9375 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_945 REXdb_ID6104 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_948_rc REXdb_ID6098 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_952 REXdb_ID4072 Ty1/copia_CL011 (61) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cclementina182_953_rc REXdb_ID12209 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_955_rc REXdb_ID3131 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Cclementina182_958_rc REXdb_ID5085 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_96 REXdb_ID9174 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_961_rc REXdb_ID13157 Ty3/gypsy_CL063 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Cclementina182_962 REXdb_ID5086 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_963 REXdb_ID238 Ty1/copia_CL344 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAGGTTTTGAT (tRNA-Met) - not tested Cclementina182_964 REXdb_ID239 Ty1/copia_CL342 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Cclementina182_966_rc REXdb_ID6029 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_968 REXdb_ID13159 Ty3/gypsy_CL063 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCGAGGTT (tRNA-Met) - not tested Cclementina182_97 REXdb_ID6652 Ty3/gypsy_CL112 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGTGTCATTTAT (tRNA-Asn) - not tested Cclementina182_971_rc REXdb_ID12210 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_973 REXdb_ID240 Ty1/copia_CL112 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCT (tRNA-Met) - not tested Cclementina182_975_rc REXdb_ID9121 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGA (tRNA-Lys) - not tested Cclementina182_977_rc REXdb_ID9123 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCACCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_979 REXdb_ID9120 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_98_rc REXdb_ID9146 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cclementina182_980 REXdb_ID12201 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Cclementina182_982 REXdb_ID6260 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGATTG (tRNA-Asp) - not tested Cclementina182_984_rc REXdb_ID241 Ty1/copia_CL154 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTGTCAGAGCCA (tRNA-Met) - not tested Cclementina182_986_rc REXdb_ID5087 Ty1/copia_CL111 (8) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_987_rc REXdb_ID242 Ty1/copia_CL347 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Cclementina182_988 REXdb_ID243 Ty1/copia_CL077 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Cclementina182_99_rc REXdb_ID6232 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_990_rc REXdb_ID5088 Ty1/copia_CL349 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Cclementina182_992_rc REXdb_ID6079 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila - + + + + - - - - - not tested not tested 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_993 REXdb_ID6024 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_994 REXdb_ID5089 Ty1/copia_CL258 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 - - not tested Cclementina182_997 REXdb_ID6223 Ty3/gypsy_CL005 (261) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Cclementina182_998 REXdb_ID9134 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Cereba1_ID8 REXdb_ID12002 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested Cgrandiflora266_2_rc REXdb_ID244 Ty1/copia_CL489 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Cgrandiflora266_3_rc REXdb_ID11745 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 4 TGGTATCAGAGCAAG (tRNA-Met) - not tested Chimpo REXdb_ID5418 Ty3/gypsy_CL417 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::non-chromo-outgroup - + + + + - - - - - not tested not tested not tested not tested not tested not tested COPIA_DM REXdb_ID5384 Ty1/copia_CL350 (3) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - - - - - not tested - not tested GGTTATGGGCCCAG (1/2tRNA-Met) Copia1_DM REXdb_ID5382 Ty1/copia_CL490 (2) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - - - - - not tested - not tested GGTTATGGGCCT (1/2tRNA-Met) COPIA2_DM REXdb_ID5383 Ty1/copia_CL660 (1) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - - - - - not tested - not tested GGTTATGGGCCCAGC (1/2tRNA-Met) Cpapaya113_11 REXdb_ID12962 Ty3/gypsy_CL102 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Cpapaya113_12 REXdb_ID12964 Ty3/gypsy_CL102 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Cpapaya113_19_rc REXdb_ID12966 Ty3/gypsy_CL102 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCTAGGTTTC (tRNA-Met) - not tested Cpapaya113_2_rc REXdb_ID3132 Ty1/copia_CL265 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCTGGTT (tRNA-Met) - not tested Cpapaya113_20_rc REXdb_ID12970 Ty3/gypsy_CL102 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 TGGTATCAGAGCCG (tRNA-Met) - not tested Cpapaya113_22 REXdb_ID12968 Ty3/gypsy_CL102 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Cpapaya113_24_rc REXdb_ID12967 Ty3/gypsy_CL102 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Cpapaya113_26_rc REXdb_ID12963 Ty3/gypsy_CL102 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Cpapaya113_28_rc REXdb_ID12965 Ty3/gypsy_CL102 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 TGGTAGCAGAGCC (tRNA-Met) - not tested Cpapaya113_29 REXdb_ID12969 Ty3/gypsy_CL102 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 TGGTATCAGAGCCG (tRNA-Met) - not tested Cpapaya113_3 REXdb_ID3133 Ty1/copia_CL265 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAAGCA (tRNA-Ile) - not tested Cpapaya113_8_rc REXdb_ID3134 Ty1/copia_CL265 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCTGGTTTT (tRNA-Met) - not tested Cpapaya113_9_rc REXdb_ID3135 Ty1/copia_CL265 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCTGGTT (tRNA-Met) - not tested CRA1_ID6 REXdb_ID12003 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested CRA3a_ID1 REXdb_ID12004 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested CRA4_ID2 REXdb_ID12005 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested CRA6_ID122 REXdb_ID12006 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - not tested not tested not tested not tested not tested not tested Creinhardtii281_27 REXdb_ID3860 Ty1/copia_CL491 (2) Class_I::LTR::Ty1/copia::Osser + + + + + - - - - - - - 5 - - GGTTATGAGCCCCGCGC (tRNA-Met) Creinhardtii281_54 REXdb_ID9822 Ty3/gypsy_CL418 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTATCGAGACC (tRNA-Met) - not tested Creinhardtii281_80 REXdb_ID3861 Ty1/copia_CL491 (2) Class_I::LTR::Ty1/copia::Osser + + + + + - - - - - - - 5 - - GGTTATGAGCCCCGCGC (tRNA-Met) CRM1a_ID25 REXdb_ID12007 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested CRM3_ID37 REXdb_ID12008 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested CRM4_ID30 REXdb_ID12009 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested CRM5_ID112 REXdb_ID12010 Ty3/gypsy_CL137 (6) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested CRR1_ID14 REXdb_ID12011 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested CRR2_ID16 REXdb_ID12012 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested CRR3_ID17 REXdb_ID12013 Ty3/gypsy_CL137 (6) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested CRR4_ID19 REXdb_ID12014 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested Crubella183_1 REXdb_ID13262 Ty3/gypsy_CL099 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Crubella183_112_rc REXdb_ID11734 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGATTC (tRNA-Met) - not tested Crubella183_113 REXdb_ID11737 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGCACCAACCA (tRNA-Lys) - not tested Crubella183_114 REXdb_ID11957 Ty3/gypsy_CL419 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 - - not tested Crubella183_117 REXdb_ID4073 Ty1/copia_CL061 (14) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Crubella183_12 REXdb_ID4074 Ty1/copia_CL061 (14) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Crubella183_126 REXdb_ID13621 Ty3/gypsy_CL420 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTGAGAGCT (tRNA-Thr) - not tested Crubella183_132 REXdb_ID9708 Ty3/gypsy_CL168 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Crubella183_133 REXdb_ID245 Ty1/copia_CL323 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Crubella183_134 REXdb_ID13486 Ty3/gypsy_CL275 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTGAGAGT (tRNA-Thr) - not tested Crubella183_139 REXdb_ID9723 Ty3/gypsy_CL203 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGC (tRNA-Lys) - not tested Crubella183_14_rc REXdb_ID5093 Ty1/copia_CL492 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTC (tRNA-Met) - not tested Crubella183_143_rc REXdb_ID13622 Ty3/gypsy_CL421 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Crubella183_144 REXdb_ID5090 Ty1/copia_CL127 (7) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTGGTTCTGT (tRNA-Glu) - not tested Crubella183_146 REXdb_ID5091 Ty1/copia_CL326 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCAAGGTT (tRNA-Met) - not tested Crubella183_147_rc REXdb_ID5092 Ty1/copia_CL196 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Crubella183_150 REXdb_ID11731 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Crubella183_156 REXdb_ID4075 Ty1/copia_CL250 (4) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - + - not tested not tested 5 TGGTATCAAAGCG (tRNA-Met) - not tested Crubella183_157_rc REXdb_ID246 Ty1/copia_CL493 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCCAA (tRNA-Met) - not tested Crubella183_159_rc REXdb_ID247 Ty1/copia_CL327 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Crubella183_163 REXdb_ID4076 Ty1/copia_CL061 (14) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Crubella183_166_rc REXdb_ID5094 Ty1/copia_CL661 (1) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Crubella183_17_rc REXdb_ID13624 Ty3/gypsy_CL423 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Crubella183_170_rc REXdb_ID13623 Ty3/gypsy_CL422 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina - + + + + - + - - - not tested not tested 5 TGGTATCAGATTCAGGTTTC (tRNA-Met) - not tested Crubella183_179 REXdb_ID5095 Ty1/copia_CL186 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTC (tRNA-Met) - not tested Crubella183_181 REXdb_ID11730 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGATTCAG (tRNA-Met) - not tested Crubella183_186_rc REXdb_ID5096 Ty1/copia_CL186 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCGACGACGA (tRNA-Arg) - not tested Crubella183_190_rc REXdb_ID5755 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTGCC (tRNA-Asp) - not tested Crubella183_197_rc REXdb_ID9757 Ty3/gypsy_CL424 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Crubella183_199 REXdb_ID5097 Ty1/copia_CL492 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTC (tRNA-Met) - not tested Crubella183_2_rc REXdb_ID250 Ty1/copia_CL095 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Crubella183_203 REXdb_ID13487 Ty3/gypsy_CL275 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTGAGAGA (tRNA-Thr) - not tested Crubella183_205_rc REXdb_ID9709 Ty3/gypsy_CL168 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Crubella183_213 REXdb_ID9743 Ty3/gypsy_CL276 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - + - - 5 TGGCGCTAGAAGGAGGGG (tRNA-Asn) - not tested Crubella183_216 REXdb_ID9711 Ty3/gypsy_CL168 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCTAGAAGGAGGGGTC (tRNA-Asn) - not tested Crubella183_217_rc REXdb_ID9710 Ty3/gypsy_CL168 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Crubella183_220 REXdb_ID13625 Ty3/gypsy_CL425 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCTCCACAAG (tRNA-Asn) - not tested Crubella183_221_rc REXdb_ID9744 Ty3/gypsy_CL276 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTAGAAGGAGGGG (tRNA-Asn) - not tested Crubella183_222 REXdb_ID248 Ty1/copia_CL489 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Crubella183_224 REXdb_ID249 Ty1/copia_CL455 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Crubella183_240_rc REXdb_ID5098 Ty1/copia_CL196 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Crubella183_241 REXdb_ID4077 Ty1/copia_CL250 (4) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - + - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Crubella183_33_rc REXdb_ID5099 Ty1/copia_CL324 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Crubella183_35_rc REXdb_ID3136 Ty1/copia_CL151 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 4 TGGTGTGAGAGAG (tRNA-Leu) - not tested Crubella183_402_rc REXdb_ID251 Ty1/copia_CL032 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTT (tRNA-Met) - not tested Crubella183_438_rc REXdb_ID252 Ty1/copia_CL493 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCGA (tRNA-Met) - not tested Crubella183_439 REXdb_ID13488 Ty3/gypsy_CL277 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGGTGAAA (tRNA-Undet) - not tested Crubella183_50_rc REXdb_ID11746 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 - - not tested Crubella183_58_rc REXdb_ID13030 Ty3/gypsy_CL121 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 - - not tested Crubella183_7 REXdb_ID5100 Ty1/copia_CL326 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Crubella183_71_rc REXdb_ID253 Ty1/copia_CL095 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Crubella183_8_rc REXdb_ID11806 Ty3/gypsy_CL087 (11) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Crubella183_81_rc REXdb_ID13626 Ty3/gypsy_CL426 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGGGGCGGGGAT (tRNA-Pro) - not tested Crubella183_83 REXdb_ID13489 Ty3/gypsy_CL277 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGGTGAT (tRNA-?) - not tested Crubella183_87_rc REXdb_ID9758 Ty3/gypsy_CL427 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Crubella183_89_rc REXdb_ID9759 Ty3/gypsy_CL428 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - + - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Crubella183_91_rc REXdb_ID13069 Ty3/gypsy_CL278 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Crubella183_92 REXdb_ID11733 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGATTCAG (tRNA-Met) - not tested Crubella183_96_rc REXdb_ID254 Ty1/copia_CL256 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested CRW_ID59 REXdb_ID12015 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested Csativus122_19 REXdb_ID13627 Ty3/gypsy_CL429 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Csativus122_22_rc REXdb_ID13421 Ty3/gypsy_CL212 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Csativus122_23 REXdb_ID13423 Ty3/gypsy_CL212 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - - - - - - - 5 - - not tested Csativus122_4 REXdb_ID13422 Ty3/gypsy_CL212 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCAAACAA (tRNA-Arg) - not tested Csinensis154_1_rc REXdb_ID5107 Ty1/copia_CL110 (8) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Csinensis154_100 REXdb_ID5101 Ty1/copia_CL157 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Csinensis154_107_rc REXdb_ID5102 Ty1/copia_CL191 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Csinensis154_112_rc REXdb_ID13277 Ty3/gypsy_CL101 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Csinensis154_126_rc REXdb_ID12207 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Csinensis154_130 REXdb_ID255 Ty1/copia_CL036 (24) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGA (tRNA-Met) - not tested Csinensis154_14 REXdb_ID9402 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCATCTATGGG (tRNA-Lys) - not tested Csinensis154_145_rc REXdb_ID12214 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Csinensis154_148_rc REXdb_ID9396 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Csinensis154_155_rc REXdb_ID256 Ty1/copia_CL193 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTGTTAGAGC (tRNA-?) - not tested Csinensis154_156_rc REXdb_ID13219 Ty3/gypsy_CL076 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTG (tRNA-Thr) - not tested Csinensis154_161 REXdb_ID9181 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Csinensis154_163_rc REXdb_ID5103 Ty1/copia_CL264 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 - - not tested Csinensis154_164_rc REXdb_ID13200 Ty3/gypsy_CL075 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTGA (tRNA-Thr) - not tested Csinensis154_165 REXdb_ID257 Ty1/copia_CL193 (5) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Csinensis154_166 REXdb_ID6610 Ty3/gypsy_CL074 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCACTGTTGCCGGGGAT (tRNA-Asp) - not tested Csinensis154_169_rc REXdb_ID5104 Ty1/copia_CL111 (8) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATTAGAGCT (tRNA-Met) - not tested Csinensis154_171 REXdb_ID5105 Ty1/copia_CL349 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Csinensis154_173 REXdb_ID258 Ty1/copia_CL076 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Csinensis154_175_rc REXdb_ID259 Ty1/copia_CL115 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Csinensis154_176_rc REXdb_ID5106 Ty1/copia_CL110 (8) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Csinensis154_189_rc REXdb_ID13198 Ty3/gypsy_CL075 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTGAG (tRNA-Thr) - not tested Csinensis154_190_rc REXdb_ID9394 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Csinensis154_199_rc REXdb_ID260 Ty1/copia_CL115 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAGC (tRNA-Met) - not tested Csinensis154_2 REXdb_ID5108 Ty1/copia_CL481 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAAGCCTGGTTTC (tRNA-Met) - not tested Csinensis154_203 REXdb_ID13164 Ty3/gypsy_CL063 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGTA (tRNA-Met) - not tested Csinensis154_207 REXdb_ID12211 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Csinensis154_209 REXdb_ID12215 Ty3/gypsy_CL042 (33) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Csinensis154_210_rc REXdb_ID13628 Ty3/gypsy_CL430 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Csinensis154_22_rc REXdb_ID261 Ty1/copia_CL115 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Csinensis154_32_rc REXdb_ID13211 Ty3/gypsy_CL076 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTG (tRNA-Thr) - not tested Csinensis154_38 REXdb_ID5109 Ty1/copia_CL113 (8) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATTAGAGCT (tRNA-Met) - not tested Csinensis154_39_rc REXdb_ID2714 Ty1/copia_CL192 (5) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAAAGCC (tRNA-Met) - not tested Csinensis154_40_rc REXdb_ID13155 Ty3/gypsy_CL063 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGGGCA (tRNA-Leu) - not tested Csinensis154_44_rc REXdb_ID6615 Ty3/gypsy_CL074 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCTGGGGATTGA (tRNA-Tyr) - not tested Csinensis154_45 REXdb_ID5110 Ty1/copia_CL156 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTGGT (tRNA-Met) - not tested Csinensis154_46 REXdb_ID5111 Ty1/copia_CL096 (9) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Csinensis154_51 REXdb_ID5112 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Csinensis154_59_rc REXdb_ID5113 Ty1/copia_CL191 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Csinensis154_66_rc REXdb_ID6604 Ty3/gypsy_CL074 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGATTGA (tRNA-Asp) - not tested Csinensis154_77 REXdb_ID262 Ty1/copia_CL348 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGCAATCACAA (tRNA-Gln) - not tested Csinensis154_8_rc REXdb_ID9395 Ty3/gypsy_CL033 (49) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Csinensis154_83_rc REXdb_ID13199 Ty3/gypsy_CL075 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTAA (tRNA-Thr) - not tested Csinensis154_86_rc REXdb_ID9173 Ty3/gypsy_CL025 (65) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGATC (tRNA-Lys) - not tested Csinensis154_93 REXdb_ID13363 Ty3/gypsy_CL167 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGA (tRNA-Met) - not tested Csinensis154_95_rc REXdb_ID5114 Ty1/copia_CL129 (7) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCAAGCACCAG (tRNA-Glu) - not tested DM1731 REXdb_ID5385 Ty1/copia_CL494 (2) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - - - - - not tested - not tested GGTTAATGGGCCCAGC (1/2tRNA-Met) Ecamal_11 REXdb_ID5115 Ty1/copia_CL351 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTAAG (tRNA-Ile) - not tested Ecamal_111 REXdb_ID2715 Ty1/copia_CL041 (22) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ecamal_127_rc REXdb_ID263 Ty1/copia_CL038 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGT (tRNA-Met) - not tested Ecamal_130 REXdb_ID12268 Ty3/gypsy_CL061 (17) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Ecamal_138_rc REXdb_ID264 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ecamal_157 REXdb_ID4078 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ecamal_16 REXdb_ID265 Ty1/copia_CL197 (5) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ecamal_164 REXdb_ID266 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCCT (tRNA-Met) - not tested Ecamal_166_rc REXdb_ID267 Ty1/copia_CL159 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ecamal_17_rc REXdb_ID4079 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Ecamal_170 REXdb_ID268 Ty1/copia_CL159 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCGAGGTTT (tRNA-Met) - not tested Ecamal_173_rc REXdb_ID269 Ty1/copia_CL055 (16) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ecamal_179 REXdb_ID3137 Ty1/copia_CL116 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Ecamal_185_rc REXdb_ID2716 Ty1/copia_CL041 (22) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ecamal_187 REXdb_ID270 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Ecamal_19 REXdb_ID4080 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 - - not tested Ecamal_190 REXdb_ID271 Ty1/copia_CL266 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 5 TGGTATCGGAGCCA (tRNA-Met) - not tested Ecamal_201 REXdb_ID272 Ty1/copia_CL038 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ecamal_202 REXdb_ID273 Ty1/copia_CL049 (19) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATTAGAGT (tRNA-?) - not tested Ecamal_211_rc REXdb_ID3138 Ty1/copia_CL116 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCACGTTTT (tRNA-Met) - not tested Ecamal_214 REXdb_ID274 Ty1/copia_CL055 (16) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCT (tRNA-Met) - not tested Ecamal_228_rc REXdb_ID275 Ty1/copia_CL352 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Ecamal_229 REXdb_ID276 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ecamal_230 REXdb_ID3139 Ty1/copia_CL495 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCCACTA (tRNA-Lys) - not tested Ecamal_241 REXdb_ID4081 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Ecamal_243_rc REXdb_ID3140 Ty1/copia_CL353 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ecamal_246_rc REXdb_ID5116 Ty1/copia_CL198 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Ecamal_249 REXdb_ID2717 Ty1/copia_CL078 (11) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAAAGCC (tRNA-Met) - not tested Ecamal_251 REXdb_ID2409 Ty1/copia_CL086 (10) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Ecamal_253 REXdb_ID2718 Ty1/copia_CL078 (11) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Ecamal_26 REXdb_ID277 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ecamal_270 REXdb_ID278 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ecamal_286_rc REXdb_ID2719 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Ecamal_288 REXdb_ID2720 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Ecamal_289 REXdb_ID3141 Ty1/copia_CL495 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 4 TGGCATCCACTA (tRNA-Lys) - not tested Ecamal_294 REXdb_ID2721 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ecamal_295_rc REXdb_ID2410 Ty1/copia_CL086 (10) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Ecamal_299_rc REXdb_ID279 Ty1/copia_CL132 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Ecamal_30_rc REXdb_ID281 Ty1/copia_CL049 (19) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCATAGCC (tRNA-Met) - not tested Ecamal_303 REXdb_ID280 Ty1/copia_CL055 (16) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Ecamal_306_rc REXdb_ID4677 Ty1/copia_CL496 (2) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTGAAGTATTA not tested Ecamal_309 REXdb_ID2722 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Ecamal_316_rc REXdb_ID2723 Ty1/copia_CL078 (11) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Ecamal_317_rc REXdb_ID4082 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ecamal_325_rc REXdb_ID282 Ty1/copia_CL049 (19) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Ecamal_327 REXdb_ID2411 Ty1/copia_CL086 (10) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCATGA (tRNA-Ile) Ecamal_329_rc REXdb_ID11958 Ty3/gypsy_CL431 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ecamal_330_rc REXdb_ID283 Ty1/copia_CL049 (19) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATGAGAGCA (tRNA-Met) - not tested Ecamal_338_rc REXdb_ID284 Ty1/copia_CL352 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Ecamal_344 REXdb_ID2412 Ty1/copia_CL086 (10) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Ecamal_348 REXdb_ID2413 Ty1/copia_CL086 (10) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Ecamal_349_rc REXdb_ID4083 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ecamal_355_rc REXdb_ID2724 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ecamal_359 REXdb_ID11939 Ty3/gypsy_CL279 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ecamal_360_rc REXdb_ID4084 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Ecamal_361 REXdb_ID285 Ty1/copia_CL049 (19) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Ecamal_366 REXdb_ID286 Ty1/copia_CL049 (19) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ecamal_388_rc REXdb_ID287 Ty1/copia_CL132 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ecamal_389_rc REXdb_ID3142 Ty1/copia_CL116 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCACGT (tRNA-Met) - not tested Ecamal_390 REXdb_ID4085 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ecamal_42 REXdb_ID2725 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCC (tRNA-Met) - not tested Ecamal_59 REXdb_ID2726 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Ecamal_66 REXdb_ID288 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ecamal_67 REXdb_ID2727 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Ecamal_68 REXdb_ID289 Ty1/copia_CL038 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Ecamal_71 REXdb_ID290 Ty1/copia_CL049 (19) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ecamal_72_rc REXdb_ID5117 Ty1/copia_CL198 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Ecamal_76 REXdb_ID2728 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Ecamal_78 REXdb_ID2729 Ty1/copia_CL041 (22) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ecamal_98_rc REXdb_ID4086 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_102_rc REXdb_ID4087 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_103_rc REXdb_ID291 Ty1/copia_CL049 (19) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCA (tRNA-Met) - not tested Egrandis201_104 REXdb_ID292 Ty1/copia_CL038 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_106_rc REXdb_ID293 Ty1/copia_CL038 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Egrandis201_108_rc REXdb_ID6664 Ty3/gypsy_CL136 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCGGGGAATCG (tRNA-Asp) - not tested Egrandis201_110 REXdb_ID294 Ty1/copia_CL049 (19) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCA (tRNA-Ile) - not tested Egrandis201_112_rc REXdb_ID5118 Ty1/copia_CL351 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTAAG (tRNA-Ile) - not tested Egrandis201_113_rc REXdb_ID295 Ty1/copia_CL055 (16) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_118_rc REXdb_ID4088 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_119_rc REXdb_ID4089 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_12 REXdb_ID4090 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_120_rc REXdb_ID3143 Ty1/copia_CL117 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGTCTG (tRNA-Met) - not tested Egrandis201_125_rc REXdb_ID2730 Ty1/copia_CL041 (22) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Egrandis201_127 REXdb_ID3144 Ty1/copia_CL079 (11) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Egrandis201_128 REXdb_ID4091 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_13_rc REXdb_ID297 Ty1/copia_CL099 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_135_rc REXdb_ID7509 Ty3/gypsy_CL064 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + + + 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Egrandis201_137 REXdb_ID4092 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_139 REXdb_ID296 Ty1/copia_CL267 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Egrandis201_14 REXdb_ID298 Ty1/copia_CL099 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_142_rc REXdb_ID4093 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_143 REXdb_ID3145 Ty1/copia_CL079 (11) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Egrandis201_144 REXdb_ID2731 Ty1/copia_CL078 (11) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_145 REXdb_ID4094 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 - - not tested Egrandis201_147_rc REXdb_ID4095 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_149 REXdb_ID299 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Egrandis201_15_rc REXdb_ID4098 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_150 REXdb_ID300 Ty1/copia_CL038 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCA (tRNA-Ile) - not tested Egrandis201_152_rc REXdb_ID4096 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_154 REXdb_ID4097 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_156 REXdb_ID301 Ty1/copia_CL267 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Egrandis201_158 REXdb_ID302 Ty1/copia_CL099 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_16_rc REXdb_ID305 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Egrandis201_160_rc REXdb_ID303 Ty1/copia_CL132 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Egrandis201_161_rc REXdb_ID304 Ty1/copia_CL497 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Egrandis201_164 REXdb_ID3146 Ty1/copia_CL117 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_168 REXdb_ID5119 Ty1/copia_CL064 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTTTTAGAGC (tRNA-?) - not tested Egrandis201_169 REXdb_ID11609 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_171_rc REXdb_ID4099 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGTCTG (tRNA-Met) - not tested Egrandis201_173_rc REXdb_ID4100 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_175 REXdb_ID13086 Ty3/gypsy_CL432 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 TGGCAAAAAGAG (tRNA-Ser) - not tested Egrandis201_179_rc REXdb_ID306 Ty1/copia_CL038 (23) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCGGAGC (tRNA-Met) - not tested Egrandis201_18 REXdb_ID4101 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_180_rc REXdb_ID307 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Egrandis201_181_rc REXdb_ID4102 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATGAGAGC (tRNA-Met) - not tested Egrandis201_185_rc REXdb_ID2732 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Egrandis201_189_rc REXdb_ID308 Ty1/copia_CL049 (19) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_192_rc REXdb_ID4103 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAAAGCCTG (tRNA-Met) - not tested Egrandis201_193 REXdb_ID309 Ty1/copia_CL049 (19) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 6 TGGTATCAGAGCCG (tRNA-Met) - not tested Egrandis201_194_rc REXdb_ID310 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_195_rc REXdb_ID4104 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Egrandis201_196 REXdb_ID4105 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAACCTG (tRNA-Met) - not tested Egrandis201_198 REXdb_ID7516 Ty3/gypsy_CL064 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + - - - - - + - 5 TGGCGACTCCGCTGGGGA (tRNA-Arg) - not tested Egrandis201_2_rc REXdb_ID320 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGTA (tRNA-Met) - not tested Egrandis201_20_rc REXdb_ID4107 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_200 REXdb_ID4106 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_202 REXdb_ID311 Ty1/copia_CL099 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Egrandis201_205 REXdb_ID3147 Ty1/copia_CL116 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCACGT (tRNA-Met) - not tested Egrandis201_206_rc REXdb_ID3148 Ty1/copia_CL079 (11) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGT (tRNA-Met) - not tested Egrandis201_208_rc REXdb_ID312 Ty1/copia_CL055 (16) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_210_rc REXdb_ID3149 Ty1/copia_CL117 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_216_rc REXdb_ID2414 Ty1/copia_CL086 (10) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Egrandis201_217_rc REXdb_ID4108 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_22_rc REXdb_ID4111 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_220_rc REXdb_ID4109 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_222 REXdb_ID313 Ty1/copia_CL099 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_223_rc REXdb_ID12279 Ty3/gypsy_CL061 (17) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCCA (tRNA-Met) - not tested Egrandis201_224_rc REXdb_ID314 Ty1/copia_CL266 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Egrandis201_225_rc REXdb_ID315 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTACCAGAGT (tRNA-?) - not tested Egrandis201_226 REXdb_ID316 Ty1/copia_CL354 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCCTAG (tRNA-Met) - not tested Egrandis201_227_rc REXdb_ID4110 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_232_rc REXdb_ID2733 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_233 REXdb_ID4112 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAAAGCCTG (tRNA-Met) - not tested Egrandis201_243_rc REXdb_ID4113 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 4 - - not tested Egrandis201_246 REXdb_ID2734 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_247 REXdb_ID2735 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_248 REXdb_ID12271 Ty3/gypsy_CL061 (17) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_249_rc REXdb_ID2736 Ty1/copia_CL078 (11) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCACAGCC (tRNA-Met) - not tested Egrandis201_251 REXdb_ID4114 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_253_rc REXdb_ID2737 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_256 REXdb_ID317 Ty1/copia_CL038 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_257 REXdb_ID5120 Ty1/copia_CL064 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_26 REXdb_ID4115 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Egrandis201_260_rc REXdb_ID4116 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_263 REXdb_ID2738 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_267_rc REXdb_ID4117 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_272 REXdb_ID4118 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_276 REXdb_ID4119 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 4 - - not tested Egrandis201_277 REXdb_ID5121 Ty1/copia_CL100 (9) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Egrandis201_279 REXdb_ID3150 Ty1/copia_CL079 (11) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATTAGAGCA (tRNA-Met) - not tested Egrandis201_28 REXdb_ID4120 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_281 REXdb_ID4121 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_283 REXdb_ID318 Ty1/copia_CL159 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_29 REXdb_ID4122 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_290_rc REXdb_ID2739 Ty1/copia_CL041 (22) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Egrandis201_295_rc REXdb_ID11923 Ty3/gypsy_CL213 (3) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGTCAGGTTTC (tRNA-Met) - not tested Egrandis201_296_rc REXdb_ID319 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_297_rc REXdb_ID4678 Ty1/copia_CL498 (2) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - TTTAAGGATTTATTT not tested Egrandis201_298 REXdb_ID12272 Ty3/gypsy_CL061 (17) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATTAGAGCT (tRNA-Met) - not tested Egrandis201_3_rc REXdb_ID2745 Ty1/copia_CL041 (22) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Egrandis201_301_rc REXdb_ID2740 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Egrandis201_304 REXdb_ID13040 Ty3/gypsy_CL169 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCGA (tRNA-Met) - not tested Egrandis201_305 REXdb_ID4123 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGAC (tRNA-Met) - not tested Egrandis201_31_rc REXdb_ID322 Ty1/copia_CL038 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_313 REXdb_ID321 Ty1/copia_CL038 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_314 REXdb_ID12277 Ty3/gypsy_CL061 (17) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCCA (tRNA-Met) - not tested Egrandis201_317 REXdb_ID2741 Ty1/copia_CL268 (4) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Egrandis201_321 REXdb_ID2415 Ty1/copia_CL086 (10) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Egrandis201_322_rc REXdb_ID4124 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 - - not tested Egrandis201_324_rc REXdb_ID2742 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_329 REXdb_ID4679 Ty1/copia_CL355 (3) Class_I::LTR::Ty1/copia::TAR - + + + + - - - - - not tested not tested 5 - CTTAAGGCGATTA not tested Egrandis201_33_rc REXdb_ID324 Ty1/copia_CL038 (23) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_330_rc REXdb_ID5122 Ty1/copia_CL064 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 - - not tested Egrandis201_331_rc REXdb_ID323 Ty1/copia_CL055 (16) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Egrandis201_332 REXdb_ID7521 Ty3/gypsy_CL064 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCGCTGGGGA (tRNA-Arg) - not tested Egrandis201_336 REXdb_ID4125 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_337 REXdb_ID4126 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - + - not tested not tested 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_34_rc REXdb_ID4130 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_340 REXdb_ID5123 Ty1/copia_CL064 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATTAGAGCAA (tRNA-Met) - not tested Egrandis201_341 REXdb_ID4127 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_342_rc REXdb_ID4128 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_343 REXdb_ID4129 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_346_rc REXdb_ID325 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_348 REXdb_ID2743 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Egrandis201_349_rc REXdb_ID326 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_35 REXdb_ID327 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_359_rc REXdb_ID4131 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_36 REXdb_ID328 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_360 REXdb_ID11925 Ty3/gypsy_CL213 (3) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGTCAGGTTTC (tRNA-Met) - not tested Egrandis201_362_rc REXdb_ID4132 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_368 REXdb_ID329 Ty1/copia_CL197 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Egrandis201_371 REXdb_ID330 Ty1/copia_CL354 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Egrandis201_373_rc REXdb_ID4133 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_374 REXdb_ID4134 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_375_rc REXdb_ID4135 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_376_rc REXdb_ID4136 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_377 REXdb_ID4137 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_38 REXdb_ID5124 Ty1/copia_CL199 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAAGCA (tRNA-Met) - not tested Egrandis201_380_rc REXdb_ID331 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCA (tRNA-Ile) - not tested Egrandis201_383 REXdb_ID2744 Ty1/copia_CL078 (11) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_384_rc REXdb_ID4138 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_385_rc REXdb_ID3151 Ty1/copia_CL117 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_386 REXdb_ID4139 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_387_rc REXdb_ID332 Ty1/copia_CL038 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCCT (tRNA-Met) - not tested Egrandis201_391_rc REXdb_ID333 Ty1/copia_CL087 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_394 REXdb_ID334 Ty1/copia_CL055 (16) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCCA (tRNA-Met) - not tested Egrandis201_395 REXdb_ID3152 Ty1/copia_CL117 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTAGCAGAGCC (tRNA-Met) - not tested Egrandis201_397_rc REXdb_ID3153 Ty1/copia_CL117 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_4 REXdb_ID4140 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_40 REXdb_ID4141 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_401_rc REXdb_ID12276 Ty3/gypsy_CL061 (17) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_404_rc REXdb_ID335 Ty1/copia_CL132 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_405 REXdb_ID336 Ty1/copia_CL087 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_408 REXdb_ID7514 Ty3/gypsy_CL064 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Egrandis201_415 REXdb_ID4142 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 4 TGGTATCAAAGCCTG (tRNA-Met) - not tested Egrandis201_417 REXdb_ID3154 Ty1/copia_CL079 (11) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_42 REXdb_ID4143 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_420 REXdb_ID4144 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_423_rc REXdb_ID4145 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_427 REXdb_ID13071 Ty3/gypsy_CL280 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGTTAGGTTTTGAT (tRNA-Met) - not tested Egrandis201_43_rc REXdb_ID337 Ty1/copia_CL132 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Egrandis201_430 REXdb_ID1870 Ty1/copia_CL160 (6) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Egrandis201_432 REXdb_ID4146 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_433_rc REXdb_ID4147 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - + - not tested not tested 5 TGGTACCAGAAT (tRNA-?) - not tested Egrandis201_435 REXdb_ID1871 Ty1/copia_CL160 (6) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Egrandis201_439 REXdb_ID4148 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_44 REXdb_ID338 Ty1/copia_CL055 (16) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_440_rc REXdb_ID11924 Ty3/gypsy_CL213 (3) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGTCAGGTTTC (tRNA-Met) - not tested Egrandis201_446 REXdb_ID4149 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGGGCC (tRNA-Met) - not tested Egrandis201_447_rc REXdb_ID5125 Ty1/copia_CL199 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTT (tRNA-Met) - not tested Egrandis201_448 REXdb_ID4150 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_449_rc REXdb_ID4151 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_45_rc REXdb_ID7513 Ty3/gypsy_CL064 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTCCGCTGGGGA (tRNA-Arg) - not tested Egrandis201_450_rc REXdb_ID4152 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_457 REXdb_ID4153 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_458 REXdb_ID2416 Ty1/copia_CL086 (10) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 4 - - CGTTATCAGCATGA (tRNA-Ile) Egrandis201_459 REXdb_ID4154 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_461 REXdb_ID4155 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_465_rc REXdb_ID4156 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_466_rc REXdb_ID4157 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_467_rc REXdb_ID4158 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_468_rc REXdb_ID7519 Ty3/gypsy_CL064 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGAGATTTTGAG (tRNA-Ala) - not tested Egrandis201_47 REXdb_ID4159 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_473_rc REXdb_ID4160 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_477 REXdb_ID3155 Ty1/copia_CL116 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCACGT (tRNA-Met) - not tested Egrandis201_478 REXdb_ID4161 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGCATCAGAGCCT (tRNA-Met) - not tested Egrandis201_479 REXdb_ID339 Ty1/copia_CL038 (23) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_483 REXdb_ID340 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_486 REXdb_ID4680 Ty1/copia_CL355 (3) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAGGCAATTA not tested Egrandis201_489_rc REXdb_ID341 Ty1/copia_CL049 (19) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Egrandis201_491 REXdb_ID4162 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_498 REXdb_ID2746 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 - - not tested Egrandis201_499_rc REXdb_ID2747 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_5_rc REXdb_ID7515 Ty3/gypsy_CL064 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTCCGCTGGGGA (tRNA-Arg) - not tested Egrandis201_502 REXdb_ID5126 Ty1/copia_CL199 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_504 REXdb_ID12269 Ty3/gypsy_CL061 (17) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_51_rc REXdb_ID2750 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros - + + + + - - - - - not tested not tested 4 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_515_rc REXdb_ID2748 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Egrandis201_518_rc REXdb_ID4163 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_519 REXdb_ID2749 Ty1/copia_CL078 (11) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATTAGAGCC (tRNA-Met) - not tested Egrandis201_520 REXdb_ID4164 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_522_rc REXdb_ID4165 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_523 REXdb_ID4166 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATAAGAGCC (tRNA-Met) - not tested Egrandis201_525_rc REXdb_ID7520 Ty3/gypsy_CL064 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCGCTGGGGA (tRNA-Arg) - not tested Egrandis201_528 REXdb_ID2751 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Egrandis201_53 REXdb_ID342 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_530 REXdb_ID11940 Ty3/gypsy_CL279 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_535_rc REXdb_ID4167 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_536 REXdb_ID4168 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_537_rc REXdb_ID1872 Ty1/copia_CL160 (6) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 4 TGGTATCAGAGCCAA (tRNA-Met) - not tested Egrandis201_538_rc REXdb_ID4169 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_54_rc REXdb_ID343 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_542_rc REXdb_ID4170 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_544 REXdb_ID5127 Ty1/copia_CL100 (9) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 - - not tested Egrandis201_549 REXdb_ID4171 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_55 REXdb_ID4681 Ty1/copia_CL496 (2) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTGAAGTATTA not tested Egrandis201_552_rc REXdb_ID4172 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_553 REXdb_ID4173 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_554 REXdb_ID344 Ty1/copia_CL269 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Egrandis201_555_rc REXdb_ID345 Ty1/copia_CL055 (16) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_559 REXdb_ID346 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_561 REXdb_ID4174 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_569_rc REXdb_ID13072 Ty3/gypsy_CL280 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCTAAGTTTTGAT (tRNA-Ile) - not tested Egrandis201_577_rc REXdb_ID2752 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_579_rc REXdb_ID2753 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_58_rc REXdb_ID4175 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Egrandis201_583 REXdb_ID2754 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_587_rc REXdb_ID12280 Ty3/gypsy_CL061 (17) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCCAA (tRNA-Met) - not tested Egrandis201_59 REXdb_ID2755 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_592 REXdb_ID347 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATTAGAGCCT (tRNA-Met) - not tested Egrandis201_596_rc REXdb_ID2756 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_600 REXdb_ID4176 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_609 REXdb_ID2757 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Egrandis201_610_rc REXdb_ID4177 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_615_rc REXdb_ID348 Ty1/copia_CL269 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Egrandis201_618 REXdb_ID4178 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGTCTG (tRNA-Met) - not tested Egrandis201_619_rc REXdb_ID13042 Ty3/gypsy_CL169 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Egrandis201_620 REXdb_ID349 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Egrandis201_622 REXdb_ID2417 Ty1/copia_CL086 (10) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Egrandis201_626 REXdb_ID2758 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_63 REXdb_ID350 Ty1/copia_CL038 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Egrandis201_630_rc REXdb_ID4179 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_639 REXdb_ID2759 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_642 REXdb_ID3156 Ty1/copia_CL116 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCACGT (tRNA-Met) - not tested Egrandis201_644_rc REXdb_ID4180 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_650_rc REXdb_ID351 Ty1/copia_CL055 (16) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_653 REXdb_ID352 Ty1/copia_CL269 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Egrandis201_654 REXdb_ID7523 Ty3/gypsy_CL064 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCGCTGGGGA (tRNA-Arg) - not tested Egrandis201_655_rc REXdb_ID5128 Ty1/copia_CL100 (9) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Egrandis201_656_rc REXdb_ID4181 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_657_rc REXdb_ID5129 Ty1/copia_CL100 (9) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Egrandis201_661_rc REXdb_ID2760 Ty1/copia_CL078 (11) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_662 REXdb_ID4182 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_665 REXdb_ID4183 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_667 REXdb_ID5130 Ty1/copia_CL100 (9) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATTAGAGCCTAG (tRNA-Met) - not tested Egrandis201_668 REXdb_ID353 Ty1/copia_CL055 (16) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_669 REXdb_ID4184 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_67 REXdb_ID4185 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_676_rc REXdb_ID4186 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_679 REXdb_ID4187 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_68_rc REXdb_ID4191 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_680_rc REXdb_ID4188 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_681 REXdb_ID4189 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_687_rc REXdb_ID2761 Ty1/copia_CL041 (22) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Egrandis201_688_rc REXdb_ID5131 Ty1/copia_CL198 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Egrandis201_689_rc REXdb_ID4190 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_69 REXdb_ID354 Ty1/copia_CL197 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Egrandis201_691_rc REXdb_ID4192 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_692_rc REXdb_ID4193 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_695 REXdb_ID4194 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Egrandis201_696_rc REXdb_ID3157 Ty1/copia_CL079 (11) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_698_rc REXdb_ID355 Ty1/copia_CL038 (23) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_702_rc REXdb_ID2762 Ty1/copia_CL041 (22) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Egrandis201_703 REXdb_ID4195 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_704_rc REXdb_ID3158 Ty1/copia_CL079 (11) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_705_rc REXdb_ID2763 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATTAGAGCC (tRNA-Met) - not tested Egrandis201_707_rc REXdb_ID4196 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_708 REXdb_ID4197 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - + - not tested not tested 5 TGGTATTAGAGCT (tRNA-Met) - not tested Egrandis201_709 REXdb_ID4198 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAAAGCCTG (tRNA-Met) - not tested Egrandis201_71_rc REXdb_ID4201 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_710_rc REXdb_ID4199 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_711 REXdb_ID4200 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_717 REXdb_ID7517 Ty3/gypsy_CL064 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTCCGTTGGGGA (tRNA-Arg) - not tested Egrandis201_724_rc REXdb_ID4202 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_725_rc REXdb_ID3159 Ty1/copia_CL079 (11) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Egrandis201_726_rc REXdb_ID356 Ty1/copia_CL159 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Egrandis201_727 REXdb_ID4682 Ty1/copia_CL355 (3) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - - not tested Egrandis201_729 REXdb_ID2764 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_73 REXdb_ID357 Ty1/copia_CL038 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_730 REXdb_ID4203 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_731_rc REXdb_ID2765 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_734 REXdb_ID4204 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_735 REXdb_ID358 Ty1/copia_CL049 (19) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCGA (tRNA-Met) - not tested Egrandis201_738_rc REXdb_ID4205 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_74 REXdb_ID359 Ty1/copia_CL038 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Egrandis201_743 REXdb_ID2766 Ty1/copia_CL041 (22) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Egrandis201_744 REXdb_ID2767 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_745_rc REXdb_ID2768 Ty1/copia_CL268 (4) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGGGAGCTGCT (tRNA-Sup) - not tested Egrandis201_752 REXdb_ID4206 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_753 REXdb_ID360 Ty1/copia_CL038 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Egrandis201_755 REXdb_ID12281 Ty3/gypsy_CL061 (17) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - - - - - - - 4 - - not tested Egrandis201_756_rc REXdb_ID4207 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_758_rc REXdb_ID4208 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_759 REXdb_ID4209 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_761 REXdb_ID4210 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_765_rc REXdb_ID4211 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_767 REXdb_ID361 Ty1/copia_CL197 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_769_rc REXdb_ID362 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_77_rc REXdb_ID4214 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_772 REXdb_ID4212 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 6 - - not tested Egrandis201_773 REXdb_ID363 Ty1/copia_CL099 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_775_rc REXdb_ID4213 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_777_rc REXdb_ID3160 Ty1/copia_CL116 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCACGT (tRNA-Met) - not tested Egrandis201_778_rc REXdb_ID2769 Ty1/copia_CL268 (4) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Egrandis201_779_rc REXdb_ID364 Ty1/copia_CL055 (16) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_785_rc REXdb_ID7518 Ty3/gypsy_CL064 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + - - - - - - + 5 TGGCGACTCCGCTGGGGA (tRNA-Arg) - not tested Egrandis201_787_rc REXdb_ID2770 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 4 - - not tested Egrandis201_79 REXdb_ID7512 Ty3/gypsy_CL064 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Egrandis201_796_rc REXdb_ID4215 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_797 REXdb_ID4216 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_80_rc REXdb_ID2772 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 4 TGGTATCGGAGCC (tRNA-Met) - not tested Egrandis201_800_rc REXdb_ID365 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Egrandis201_801 REXdb_ID4217 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_805 REXdb_ID4218 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_806_rc REXdb_ID366 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_807_rc REXdb_ID2771 Ty1/copia_CL268 (4) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATTAGAGCCT (tRNA-Met) - not tested Egrandis201_81 REXdb_ID367 Ty1/copia_CL049 (19) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGTT (tRNA-Met) - not tested Egrandis201_815 REXdb_ID3161 Ty1/copia_CL353 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Egrandis201_817 REXdb_ID368 Ty1/copia_CL055 (16) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGTA (tRNA-Met) - not tested Egrandis201_818 REXdb_ID2773 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_819 REXdb_ID369 Ty1/copia_CL497 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_82 REXdb_ID4219 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_825 REXdb_ID4683 Ty1/copia_CL498 (2) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - TTTAAGGATTTATTT not tested Egrandis201_827 REXdb_ID370 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_828_rc REXdb_ID4220 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_83_rc REXdb_ID4222 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_831 REXdb_ID4221 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_836_rc REXdb_ID371 Ty1/copia_CL087 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis201_84 REXdb_ID13043 Ty3/gypsy_CL169 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Egrandis201_86 REXdb_ID2774 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis201_89 REXdb_ID4223 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_90 REXdb_ID4224 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_91 REXdb_ID4225 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis201_92_rc REXdb_ID4226 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis201_96_rc REXdb_ID12275 Ty3/gypsy_CL061 (17) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_1002 REXdb_ID4227 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_1005 REXdb_ID2775 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis297_1006_rc REXdb_ID7522 Ty3/gypsy_CL064 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCGCTGGGGA (tRNA-Arg) - not tested Egrandis297_1010 REXdb_ID2418 Ty1/copia_CL086 (10) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - TTATCAGCACGA (tRNA-Ile) Egrandis297_1019_rc REXdb_ID372 Ty1/copia_CL159 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Egrandis297_1020 REXdb_ID2776 Ty1/copia_CL041 (22) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGATC (tRNA-Met) - not tested Egrandis297_1021_rc REXdb_ID373 Ty1/copia_CL049 (19) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Egrandis297_1022_rc REXdb_ID2777 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Egrandis297_1029 REXdb_ID5132 Ty1/copia_CL198 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Egrandis297_1038 REXdb_ID1873 Ty1/copia_CL160 (6) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 - - not tested Egrandis297_1043 REXdb_ID374 Ty1/copia_CL197 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Egrandis297_1046 REXdb_ID4228 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis297_1047_rc REXdb_ID2778 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis297_1048 REXdb_ID375 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_1049 REXdb_ID5133 Ty1/copia_CL100 (9) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTGG (tRNA-Met) - not tested Egrandis297_1050_rc REXdb_ID2779 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis297_1058_rc REXdb_ID2780 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Egrandis297_1060 REXdb_ID4229 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Egrandis297_1064 REXdb_ID4230 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_1066 REXdb_ID12282 Ty3/gypsy_CL061 (17) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCCAA (tRNA-Met) - not tested Egrandis297_1071_rc REXdb_ID376 Ty1/copia_CL087 (10) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 4 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis297_1079_rc REXdb_ID2781 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis297_1081 REXdb_ID4231 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_1082 REXdb_ID377 Ty1/copia_CL132 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis297_1083_rc REXdb_ID378 Ty1/copia_CL049 (19) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCGA (tRNA-Met) - not tested Egrandis297_1090 REXdb_ID1874 Ty1/copia_CL160 (6) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Egrandis297_1095 REXdb_ID379 Ty1/copia_CL159 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis297_1100 REXdb_ID4232 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_1101 REXdb_ID4233 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_1106_rc REXdb_ID380 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_1108_rc REXdb_ID4234 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_1115 REXdb_ID381 Ty1/copia_CL099 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_1116 REXdb_ID5134 Ty1/copia_CL100 (9) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTGG (tRNA-Met) - not tested Egrandis297_1119_rc REXdb_ID4235 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_1120_rc REXdb_ID4236 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATAAGCAT (tRNA-?) - not tested Egrandis297_1123 REXdb_ID382 Ty1/copia_CL038 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Egrandis297_1125 REXdb_ID4237 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis297_1139_rc REXdb_ID383 Ty1/copia_CL266 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTACCAAAGC (tRNA-?) - not tested Egrandis297_1142 REXdb_ID384 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Egrandis297_1147 REXdb_ID2782 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis297_1150 REXdb_ID385 Ty1/copia_CL352 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCATAGCC (tRNA-Met) - not tested Egrandis297_1152_rc REXdb_ID4238 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_1154 REXdb_ID2783 Ty1/copia_CL078 (11) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis297_1157 REXdb_ID4239 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_1158 REXdb_ID4240 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_1160_rc REXdb_ID4241 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_1162 REXdb_ID4242 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_1163_rc REXdb_ID2784 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis297_1168 REXdb_ID4243 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_1175_rc REXdb_ID386 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCCT (tRNA-Met) - not tested Egrandis297_1176_rc REXdb_ID387 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_1177_rc REXdb_ID4244 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_1179_rc REXdb_ID4245 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_1182_rc REXdb_ID388 Ty1/copia_CL132 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAGTTCATGAT (tRNA-Val) - not tested Egrandis297_1185_rc REXdb_ID2785 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Egrandis297_1186_rc REXdb_ID4246 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_1187 REXdb_ID2786 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis297_1199 REXdb_ID389 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Egrandis297_1203_rc REXdb_ID2787 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis297_1204_rc REXdb_ID3162 Ty1/copia_CL353 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Egrandis297_1205 REXdb_ID4247 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Egrandis297_1207_rc REXdb_ID12274 Ty3/gypsy_CL061 (17) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 - - not tested Egrandis297_1210_rc REXdb_ID4248 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTTTCAGAGCT (tRNA-Met) - not tested Egrandis297_1211 REXdb_ID3163 Ty1/copia_CL116 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 4 TGGTATCAGAGCCT (tRNA-Met) - not tested Egrandis297_1212_rc REXdb_ID5135 Ty1/copia_CL100 (9) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_1214 REXdb_ID4249 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_1216 REXdb_ID7511 Ty3/gypsy_CL064 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - - - 5 TGGCGACTCCGCTGGGGA (tRNA-Arg) - not tested Egrandis297_1219_rc REXdb_ID4250 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis297_1221 REXdb_ID2788 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAAAGCC (tRNA-Met) - not tested Egrandis297_1223 REXdb_ID2789 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis297_1227 REXdb_ID4251 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_1230_rc REXdb_ID390 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_1231 REXdb_ID4252 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_1235 REXdb_ID391 Ty1/copia_CL038 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_1236 REXdb_ID4253 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Egrandis297_1238 REXdb_ID4254 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_1239 REXdb_ID4255 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_1241_rc REXdb_ID4256 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_1243_rc REXdb_ID7510 Ty3/gypsy_CL064 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCGCTGGGGA (tRNA-Arg) - not tested Egrandis297_1246 REXdb_ID12278 Ty3/gypsy_CL061 (17) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCCA (tRNA-Met) - not tested Egrandis297_1254_rc REXdb_ID392 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis297_1256 REXdb_ID4257 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Egrandis297_1257_rc REXdb_ID4258 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis297_1258_rc REXdb_ID4259 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_1260 REXdb_ID2790 Ty1/copia_CL041 (22) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Egrandis297_1262 REXdb_ID393 Ty1/copia_CL087 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis297_1270 REXdb_ID4260 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 4 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_1277_rc REXdb_ID4261 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_1278_rc REXdb_ID5136 Ty1/copia_CL100 (9) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Egrandis297_1283 REXdb_ID2791 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis297_1285_rc REXdb_ID4262 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_1286_rc REXdb_ID394 Ty1/copia_CL354 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Egrandis297_1287_rc REXdb_ID4263 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Egrandis297_1288 REXdb_ID2792 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Egrandis297_1290 REXdb_ID4264 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis297_1291_rc REXdb_ID395 Ty1/copia_CL099 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis297_1293_rc REXdb_ID396 Ty1/copia_CL038 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCT (tRNA-Met) - not tested Egrandis297_1296 REXdb_ID397 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Egrandis297_1297_rc REXdb_ID4265 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis297_1302_rc REXdb_ID5137 Ty1/copia_CL199 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Egrandis297_1307_rc REXdb_ID2793 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis297_1308 REXdb_ID398 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_1310 REXdb_ID4266 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_1314_rc REXdb_ID399 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Egrandis297_1315 REXdb_ID400 Ty1/copia_CL267 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Egrandis297_1317_rc REXdb_ID401 Ty1/copia_CL269 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_1318 REXdb_ID4267 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis297_1319 REXdb_ID3164 Ty1/copia_CL079 (11) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Egrandis297_1320_rc REXdb_ID402 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_1322_rc REXdb_ID4268 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis297_1323_rc REXdb_ID403 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_1324 REXdb_ID404 Ty1/copia_CL055 (16) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis297_1327 REXdb_ID4269 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_1328 REXdb_ID405 Ty1/copia_CL055 (16) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis297_1329_rc REXdb_ID2794 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAAAGCC (tRNA-Met) - not tested Egrandis297_1331_rc REXdb_ID4270 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_1332_rc REXdb_ID4271 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_1334_rc REXdb_ID5138 Ty1/copia_CL199 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAAGCA (tRNA-Met) - not tested Egrandis297_1335_rc REXdb_ID12283 Ty3/gypsy_CL061 (17) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAAAGCCAT (tRNA-Met) - not tested Egrandis297_1336_rc REXdb_ID4272 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Egrandis297_1343 REXdb_ID2795 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis297_1347_rc REXdb_ID2796 Ty1/copia_CL041 (22) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - not tested not tested 5 TGGTATCAGTTG (tRNA-?) - not tested Egrandis297_301 REXdb_ID4273 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_302 REXdb_ID4274 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_69_rc REXdb_ID12273 Ty3/gypsy_CL061 (17) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_765_rc REXdb_ID4275 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_801_rc REXdb_ID12270 Ty3/gypsy_CL061 (17) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_848 REXdb_ID4276 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_850 REXdb_ID2797 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATTAGAGCC (tRNA-Met) - not tested Egrandis297_851 REXdb_ID4277 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATTAGAGCCTG (tRNA-Met) - not tested Egrandis297_855 REXdb_ID4278 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_857 REXdb_ID13041 Ty3/gypsy_CL169 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Egrandis297_859 REXdb_ID3165 Ty1/copia_CL117 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_864 REXdb_ID3166 Ty1/copia_CL117 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAAGCCTG (tRNA-Met) - not tested Egrandis297_866 REXdb_ID406 Ty1/copia_CL049 (19) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis297_869_rc REXdb_ID407 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis297_871_rc REXdb_ID408 Ty1/copia_CL049 (19) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis297_875 REXdb_ID4279 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_876_rc REXdb_ID5139 Ty1/copia_CL351 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 6 TGGTATCAGAGCTAAG (tRNA-Ile) - not tested Egrandis297_883_rc REXdb_ID2798 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros - + + + + - - - - - not tested not tested 5 TGGTATCACAGCC (tRNA-Met) - not tested Egrandis297_884_rc REXdb_ID3167 Ty1/copia_CL079 (11) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Egrandis297_888_rc REXdb_ID409 Ty1/copia_CL099 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_889 REXdb_ID2799 Ty1/copia_CL041 (22) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Egrandis297_890_rc REXdb_ID5140 Ty1/copia_CL198 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Egrandis297_892_rc REXdb_ID4280 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_893_rc REXdb_ID4281 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_896_rc REXdb_ID4282 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_898 REXdb_ID4283 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_899_rc REXdb_ID4284 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_9 REXdb_ID4285 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_901 REXdb_ID1875 Ty1/copia_CL160 (6) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCAGC (tRNA-Met) - not tested Egrandis297_904 REXdb_ID4286 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Egrandis297_906_rc REXdb_ID4287 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_912_rc REXdb_ID410 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTTGTTGCTA (tRNA-Glu) - not tested Egrandis297_913 REXdb_ID4288 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_916_rc REXdb_ID411 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Egrandis297_917 REXdb_ID2800 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Egrandis297_919_rc REXdb_ID4289 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_920_rc REXdb_ID2801 Ty1/copia_CL078 (11) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 4 TGGTATCAGAGTC (tRNA-Met) - not tested Egrandis297_921 REXdb_ID412 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCA (tRNA-Met) - not tested Egrandis297_922_rc REXdb_ID3168 Ty1/copia_CL079 (11) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAGGC (tRNA-?) - not tested Egrandis297_924 REXdb_ID413 Ty1/copia_CL055 (16) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Egrandis297_926 REXdb_ID4290 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_927 REXdb_ID4291 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_928_rc REXdb_ID4292 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_929_rc REXdb_ID4293 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATTAGAGCC (tRNA-Met) - not tested Egrandis297_933_rc REXdb_ID414 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_934 REXdb_ID4294 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_937 REXdb_ID4295 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_938_rc REXdb_ID4296 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_945 REXdb_ID2802 Ty1/copia_CL078 (11) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_948_rc REXdb_ID415 Ty1/copia_CL049 (19) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Egrandis297_950 REXdb_ID4297 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_960_rc REXdb_ID416 Ty1/copia_CL038 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCC (tRNA-Met) - not tested Egrandis297_965_rc REXdb_ID4298 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_967_rc REXdb_ID4299 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Egrandis297_968_rc REXdb_ID417 Ty1/copia_CL267 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Egrandis297_975_rc REXdb_ID418 Ty1/copia_CL038 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Egrandis297_979 REXdb_ID4300 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_980_rc REXdb_ID4301 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_981_rc REXdb_ID4302 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_983_rc REXdb_ID12284 Ty3/gypsy_CL061 (17) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCCAA (tRNA-Met) - not tested Egrandis297_984 REXdb_ID419 Ty1/copia_CL016 (48) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCAA (tRNA-Met) - not tested Egrandis297_986_rc REXdb_ID4303 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_988_rc REXdb_ID420 Ty1/copia_CL266 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Egrandis297_989_rc REXdb_ID4304 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_991 REXdb_ID4305 Ty1/copia_CL002 (228) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Egrandis297_992 REXdb_ID5141 Ty1/copia_CL064 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAAGCA (tRNA-Ile) - not tested Egrandis297_997 REXdb_ID2803 Ty1/copia_CL014 (51) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - + 5 TGGTATTAGAGCC (tRNA-Met) - not tested Esalsugineum173_1_rc REXdb_ID2489 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_10 REXdb_ID2419 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1000 REXdb_ID8771 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Esalsugineum173_1002_rc REXdb_ID9444 Ty3/gypsy_CL051 (21) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTA (tRNA-Arg) - not tested Esalsugineum173_1003 REXdb_ID5861 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + + - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1004_rc REXdb_ID5764 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1009 REXdb_ID5918 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 - - not tested Esalsugineum173_1011_rc REXdb_ID5956 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAGGGA (tRNA-Asp) - not tested Esalsugineum173_1015 REXdb_ID5811 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1016 REXdb_ID9464 Ty3/gypsy_CL088 (11) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCCACCGTGGGGA (tRNA-Lys) - not tested Esalsugineum173_1020_rc REXdb_ID9475 Ty3/gypsy_CL051 (21) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCATCCGTGGGGA (tRNA-Lys) - not tested Esalsugineum173_1024_rc REXdb_ID2420 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1025 REXdb_ID11532 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAACCAA (tRNA-Met) - not tested Esalsugineum173_1027 REXdb_ID2421 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1028 REXdb_ID3169 Ty1/copia_CL062 (14) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Esalsugineum173_1030 REXdb_ID11876 Ty3/gypsy_CL134 (6) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGATTC (tRNA-Met) - not tested Esalsugineum173_1033_rc REXdb_ID9597 Ty3/gypsy_CL065 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCCACCGTGGGGC (tRNA-Lys) - not tested Esalsugineum173_1034_rc REXdb_ID421 Ty1/copia_CL476 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_1035 REXdb_ID5873 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCG (tRNA-Asp) - not tested Esalsugineum173_1037 REXdb_ID8789 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Esalsugineum173_1038 REXdb_ID2422 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1041 REXdb_ID5142 Ty1/copia_CL196 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_1044_rc REXdb_ID4306 Ty1/copia_CL088 (10) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAAC (tRNA-Met) - not tested Esalsugineum173_1045_rc REXdb_ID11597 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Esalsugineum173_1046 REXdb_ID11562 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 - - not tested Esalsugineum173_1047 REXdb_ID11544 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1049_rc REXdb_ID11739 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGATTCAG (tRNA-Met) - not tested Esalsugineum173_1051_rc REXdb_ID11545 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1052 REXdb_ID5143 Ty1/copia_CL356 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCGA (tRNA-Met) - not tested Esalsugineum173_1055_rc REXdb_ID8783 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTGTCTGTGGGGA (tRNA-Lys) - not tested Esalsugineum173_1057_rc REXdb_ID8791 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGTA (tRNA-Lys) - not tested Esalsugineum173_1058 REXdb_ID5864 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_1061 REXdb_ID3170 Ty1/copia_CL244 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_1062_rc REXdb_ID2423 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1065 REXdb_ID9446 Ty3/gypsy_CL051 (21) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Esalsugineum173_1066_rc REXdb_ID8772 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGAGA (tRNA-Lys) - not tested Esalsugineum173_1068 REXdb_ID9453 Ty3/gypsy_CL051 (21) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGAAGGGG (tRNA-Arg) - not tested Esalsugineum173_1071 REXdb_ID5766 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCTGTTGCC (tRNA-Asp) - not tested Esalsugineum173_1072 REXdb_ID2804 Ty1/copia_CL084 (10) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Esalsugineum173_1074_rc REXdb_ID8784 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Esalsugineum173_1075 REXdb_ID8768 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Esalsugineum173_1076_rc REXdb_ID11529 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - not tested Esalsugineum173_1077_rc REXdb_ID5144 Ty1/copia_CL189 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Esalsugineum173_1079_rc REXdb_ID5919 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCATTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_108_rc REXdb_ID5988 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila - + + + + - - - - - not tested not tested 5 TGGATTGACAAC (tRNA-?) - not tested Esalsugineum173_1080_rc REXdb_ID8795 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - - - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Esalsugineum173_1085_rc REXdb_ID5145 Ty1/copia_CL255 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Esalsugineum173_1102_rc REXdb_ID5876 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1104 REXdb_ID5950 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1109 REXdb_ID5765 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1110_rc REXdb_ID5844 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - + - + 4 - - not tested Esalsugineum173_1111 REXdb_ID11565 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTAGCAGAGCCA (tRNA-Met) - not tested Esalsugineum173_1112_rc REXdb_ID5817 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCGTTGCCAA (tRNA-Asp) - not tested Esalsugineum173_1113 REXdb_ID11547 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1114_rc REXdb_ID5835 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1115 REXdb_ID11721 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Esalsugineum173_1116 REXdb_ID5848 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1117 REXdb_ID5827 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1119 REXdb_ID5820 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 4 - - not tested Esalsugineum173_112_rc REXdb_ID11628 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1120 REXdb_ID11502 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_1121_rc REXdb_ID11530 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1131 REXdb_ID6003 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCACCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_1132_rc REXdb_ID5997 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_1133 REXdb_ID11564 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - not tested Esalsugineum173_1134_rc REXdb_ID5894 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila - + + + + - - - + - not tested not tested 5 TGGCGCCGTACC (tRNA-?) - not tested Esalsugineum173_1136_rc REXdb_ID11579 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Esalsugineum173_1138_rc REXdb_ID2805 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Esalsugineum173_1139 REXdb_ID5943 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCG (tRNA-Asp) - not tested Esalsugineum173_114_rc REXdb_ID8774 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGAGGGGA (tRNA-Lys) - not tested Esalsugineum173_1144 REXdb_ID2424 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1145 REXdb_ID3171 Ty1/copia_CL499 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Esalsugineum173_1146 REXdb_ID2425 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1148 REXdb_ID2426 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1149 REXdb_ID5927 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCG (tRNA-Asp) - not tested Esalsugineum173_115 REXdb_ID5790 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1150 REXdb_ID3172 Ty1/copia_CL062 (14) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_1154 REXdb_ID5964 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGTTGGGGA (tRNA-Asp) - not tested Esalsugineum173_1155_rc REXdb_ID2427 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1157 REXdb_ID13318 Ty3/gypsy_CL135 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGTCGTG (tRNA-?) - not tested Esalsugineum173_1158 REXdb_ID4307 Ty1/copia_CL088 (10) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Esalsugineum173_1159 REXdb_ID5146 Ty1/copia_CL500 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_1160 REXdb_ID2428 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1161 REXdb_ID11533 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1163 REXdb_ID5147 Ty1/copia_CL500 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Esalsugineum173_1164 REXdb_ID2429 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1165 REXdb_ID2430 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CACGTTATCAGCACGAT (tRNA-Ile) Esalsugineum173_1166_rc REXdb_ID2431 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1168 REXdb_ID2432 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1169 REXdb_ID11539 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1170_rc REXdb_ID3173 Ty1/copia_CL151 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Esalsugineum173_1171 REXdb_ID2433 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1172 REXdb_ID2434 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1174_rc REXdb_ID11735 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_1175_rc REXdb_ID11570 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1180_rc REXdb_ID5896 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 - - not tested Esalsugineum173_1182 REXdb_ID2435 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1184_rc REXdb_ID11624 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1187_rc REXdb_ID2436 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1191_rc REXdb_ID422 Ty1/copia_CL187 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Esalsugineum173_1192 REXdb_ID11689 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1194_rc REXdb_ID11541 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1197_rc REXdb_ID11719 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_1199 REXdb_ID5941 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 - - not tested Esalsugineum173_12_rc REXdb_ID2448 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1201 REXdb_ID2437 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1202_rc REXdb_ID2438 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1203_rc REXdb_ID5148 Ty1/copia_CL245 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTCGA (tRNA-Met) - not tested Esalsugineum173_1204 REXdb_ID11534 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1206 REXdb_ID5961 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_1208 REXdb_ID5149 Ty1/copia_CL270 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCGA (tRNA-Met) - not tested Esalsugineum173_1209_rc REXdb_ID8767 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Esalsugineum173_1210_rc REXdb_ID2439 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1212_rc REXdb_ID2440 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1217 REXdb_ID2441 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_122_rc REXdb_ID2442 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1220_rc REXdb_ID11748 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGATT (tRNA-Met) - not tested Esalsugineum173_1225_rc REXdb_ID423 Ty1/copia_CL323 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Esalsugineum173_1228_rc REXdb_ID5942 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGACC (tRNA-Asp) - not tested Esalsugineum173_1236_rc REXdb_ID11901 Ty3/gypsy_CL165 (4) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGACA (tRNA-Met) - not tested Esalsugineum173_1238_rc REXdb_ID11902 Ty3/gypsy_CL165 (4) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGACA (tRNA-Met) - not tested Esalsugineum173_1239_rc REXdb_ID11615 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_124_rc REXdb_ID2444 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1245_rc REXdb_ID5150 Ty1/copia_CL127 (7) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTGGTTTGTG (tRNA-Ile) - not tested Esalsugineum173_1246 REXdb_ID2443 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1248 REXdb_ID5856 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1249 REXdb_ID5151 Ty1/copia_CL127 (7) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTGGTTCCAT (tRNA-Glu) - not tested Esalsugineum173_125 REXdb_ID5152 Ty1/copia_CL357 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTT (tRNA-Met) - not tested Esalsugineum173_1252_rc REXdb_ID5846 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1254_rc REXdb_ID5937 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1255 REXdb_ID6001 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGATTT (tRNA-Asp) - not tested Esalsugineum173_126_rc REXdb_ID2445 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCATGA (tRNA-Ile) Esalsugineum173_1260 REXdb_ID5905 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCG (tRNA-Asp) - not tested Esalsugineum173_1266_rc REXdb_ID11603 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Esalsugineum173_1268_rc REXdb_ID5993 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGAGGA (tRNA-Asp) - not tested Esalsugineum173_127 REXdb_ID2446 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1270_rc REXdb_ID11626 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1271 REXdb_ID11720 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_1272 REXdb_ID11699 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGATC (tRNA-Met) - not tested Esalsugineum173_1276_rc REXdb_ID5767 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1277_rc REXdb_ID11522 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Esalsugineum173_1279_rc REXdb_ID5772 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_128 REXdb_ID2447 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1285 REXdb_ID5925 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGATA (tRNA-Asp) - not tested Esalsugineum173_1286_rc REXdb_ID5841 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1287 REXdb_ID11621 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_129 REXdb_ID5153 Ty1/copia_CL473 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Esalsugineum173_1292 REXdb_ID5966 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_1296 REXdb_ID5812 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_130 REXdb_ID11751 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGATT (tRNA-Met) - not tested Esalsugineum173_131_rc REXdb_ID2449 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1315_rc REXdb_ID11959 Ty3/gypsy_CL433 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 4 - - not tested Esalsugineum173_1316_rc REXdb_ID3174 Ty1/copia_CL108 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_132_rc REXdb_ID3175 Ty1/copia_CL151 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Esalsugineum173_1322_rc REXdb_ID11900 Ty3/gypsy_CL165 (4) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGATTCA (tRNA-Met) - not tested Esalsugineum173_1325 REXdb_ID8799 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Esalsugineum173_1326 REXdb_ID13317 Ty3/gypsy_CL135 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGTCGTG (tRNA-?) - not tested Esalsugineum173_133 REXdb_ID11550 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Esalsugineum173_1330_rc REXdb_ID11715 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Esalsugineum173_1335 REXdb_ID5879 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_134 REXdb_ID11875 Ty3/gypsy_CL134 (6) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAAT (tRNA-?) - not tested Esalsugineum173_1343_rc REXdb_ID2450 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1347_rc REXdb_ID5952 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_135 REXdb_ID424 Ty1/copia_CL358 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Esalsugineum173_1352 REXdb_ID5845 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila - + + + + - - - + - not tested not tested 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1358_rc REXdb_ID5938 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1359 REXdb_ID5831 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + + - - 4 - - not tested Esalsugineum173_1360_rc REXdb_ID8769 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Esalsugineum173_1368 REXdb_ID5795 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1369 REXdb_ID5775 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_137_rc REXdb_ID2451 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1373 REXdb_ID5773 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1376 REXdb_ID11535 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_138 REXdb_ID2452 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1388_rc REXdb_ID5776 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1389 REXdb_ID5923 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_139_rc REXdb_ID3176 Ty1/copia_CL501 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 - - not tested Esalsugineum173_1391 REXdb_ID5915 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGTCGGGGA (tRNA-Asp) - not tested Esalsugineum173_1393 REXdb_ID13424 Ty3/gypsy_CL214 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina - + + + + - + - - - not tested not tested 5 TGGTATCAGAGAC (tRNA-Met) - not tested Esalsugineum173_1397 REXdb_ID5992 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_1399_rc REXdb_ID11627 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_14 REXdb_ID9468 Ty3/gypsy_CL088 (11) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Esalsugineum173_1403_rc REXdb_ID5979 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_1404_rc REXdb_ID5854 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1406_rc REXdb_ID5154 Ty1/copia_CL127 (7) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTC (tRNA-Met) - not tested Esalsugineum173_1407 REXdb_ID11600 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - not tested Esalsugineum173_1408_rc REXdb_ID2453 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_141_rc REXdb_ID9609 Ty3/gypsy_CL065 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCTACCGTGGGGCT (tRNA-Lys) - not tested Esalsugineum173_1411 REXdb_ID5945 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGAGGA (tRNA-Asp) - not tested Esalsugineum173_1413_rc REXdb_ID9760 Ty3/gypsy_CL434 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGTGGGGA (tRNA-Lys) - not tested Esalsugineum173_1414 REXdb_ID5818 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1415 REXdb_ID11696 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Esalsugineum173_1422 REXdb_ID5924 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGAA (tRNA-Asp) - not tested Esalsugineum173_1424 REXdb_ID5880 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_1425 REXdb_ID5867 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCTA (tRNA-Asp) - not tested Esalsugineum173_1426 REXdb_ID9474 Ty3/gypsy_CL088 (11) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Esalsugineum173_1427 REXdb_ID2454 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1428 REXdb_ID13265 Ty3/gypsy_CL099 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_1429_rc REXdb_ID5155 Ty1/copia_CL161 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Esalsugineum173_1430 REXdb_ID5156 Ty1/copia_CL189 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTCG (tRNA-Met) - not tested Esalsugineum173_1432 REXdb_ID3177 Ty1/copia_CL244 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTAGCAGAGCCA (tRNA-Met) - not tested Esalsugineum173_1433_rc REXdb_ID2455 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1434 REXdb_ID11688 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1436 REXdb_ID2456 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1437_rc REXdb_ID5157 Ty1/copia_CL356 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTCG (tRNA-Met) - not tested Esalsugineum173_1438 REXdb_ID5863 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1439 REXdb_ID5828 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1443_rc REXdb_ID5916 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1451_rc REXdb_ID5796 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1453 REXdb_ID5777 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1454_rc REXdb_ID8802 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Esalsugineum173_1456_rc REXdb_ID5995 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_1458 REXdb_ID9608 Ty3/gypsy_CL065 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCCACTGTGGGGC (tRNA-Lys) - not tested Esalsugineum173_1460 REXdb_ID5868 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGACC (tRNA-Asp) - not tested Esalsugineum173_1462_rc REXdb_ID425 Ty1/copia_CL502 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_1464 REXdb_ID5158 Ty1/copia_CL503 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Esalsugineum173_1465_rc REXdb_ID4308 Ty1/copia_CL075 (12) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + + - - 5 TGGTAGCAGAGC (tRNA-Met) - not tested Esalsugineum173_1466 REXdb_ID2457 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1467 REXdb_ID9600 Ty3/gypsy_CL065 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCTA (tRNA-Lys) - not tested Esalsugineum173_1469 REXdb_ID4309 Ty1/copia_CL075 (12) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCGA (tRNA-Met) - not tested Esalsugineum173_147 REXdb_ID11874 Ty3/gypsy_CL134 (6) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTC (tRNA-Met) - not tested Esalsugineum173_1472 REXdb_ID1876 Ty1/copia_CL248 (4) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTAGCAGAGCAA (tRNA-Met) - not tested Esalsugineum173_1473 REXdb_ID5159 Ty1/copia_CL189 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATAAGAGCCA (tRNA-Met) - not tested Esalsugineum173_1478 REXdb_ID3178 Ty1/copia_CL062 (14) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_1483_rc REXdb_ID11542 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - not tested Esalsugineum173_1484 REXdb_ID9450 Ty3/gypsy_CL051 (21) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - + - 5 - - not tested Esalsugineum173_1485_rc REXdb_ID5957 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCACCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_1487_rc REXdb_ID11589 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Esalsugineum173_149_rc REXdb_ID4310 Ty1/copia_CL088 (10) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Esalsugineum173_1490 REXdb_ID11528 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - not tested Esalsugineum173_1492_rc REXdb_ID11557 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Esalsugineum173_1494_rc REXdb_ID5160 Ty1/copia_CL270 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Esalsugineum173_1495_rc REXdb_ID2458 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1499 REXdb_ID9602 Ty3/gypsy_CL065 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 6 TGGCGCCCACCGTGGGGCTA (tRNA-Lys) - not tested Esalsugineum173_15 REXdb_ID2459 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1500_rc REXdb_ID2460 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1502 REXdb_ID11717 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Esalsugineum173_1511_rc REXdb_ID11595 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTAGCAGAGCCA (tRNA-Met) - not tested Esalsugineum173_1512 REXdb_ID11554 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1513 REXdb_ID5799 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGC (tRNA-Asp) - not tested Esalsugineum173_1514 REXdb_ID5857 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1517_rc REXdb_ID11527 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - not tested Esalsugineum173_1519_rc REXdb_ID5791 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCTGTTGCC (tRNA-Asp) - not tested Esalsugineum173_1522_rc REXdb_ID5929 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGTCGGGGA (tRNA-Asp) - not tested Esalsugineum173_1523 REXdb_ID5907 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCG (tRNA-Asp) - not tested Esalsugineum173_1525_rc REXdb_ID11808 Ty3/gypsy_CL087 (11) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Esalsugineum173_1528 REXdb_ID9606 Ty3/gypsy_CL065 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCTA (tRNA-Lys) - not tested Esalsugineum173_1531_rc REXdb_ID2461 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1533_rc REXdb_ID426 Ty1/copia_CL032 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Esalsugineum173_1534_rc REXdb_ID11584 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_1536_rc REXdb_ID5833 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1539_rc REXdb_ID4311 Ty1/copia_CL075 (12) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + + - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Esalsugineum173_154_rc REXdb_ID4312 Ty1/copia_CL088 (10) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Esalsugineum173_1540 REXdb_ID9456 Ty3/gypsy_CL051 (21) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCACGCCAGGTAGGGG (tRNA-Arg) - not tested Esalsugineum173_1541 REXdb_ID5909 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCG (tRNA-Asp) - not tested Esalsugineum173_1542_rc REXdb_ID13266 Ty3/gypsy_CL099 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_1544 REXdb_ID13263 Ty3/gypsy_CL099 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAAAGCCAGGTT (tRNA-Met) - not tested Esalsugineum173_1545_rc REXdb_ID11623 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1548_rc REXdb_ID13316 Ty3/gypsy_CL135 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGTCGTG (tRNA-?) - not tested Esalsugineum173_1549_rc REXdb_ID5161 Ty1/copia_CL200 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Esalsugineum173_1552_rc REXdb_ID427 Ty1/copia_CL032 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Esalsugineum173_1558_rc REXdb_ID5946 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGACC (tRNA-Asp) - not tested Esalsugineum173_1559 REXdb_ID13490 Ty3/gypsy_CL281 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_156_rc REXdb_ID2806 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Esalsugineum173_1560 REXdb_ID2462 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1561 REXdb_ID6009 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTTCCGGGGA (tRNA-Asp) - not tested Esalsugineum173_1562 REXdb_ID5911 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCG (tRNA-Asp) - not tested Esalsugineum173_1563_rc REXdb_ID2463 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1564_rc REXdb_ID5865 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1567 REXdb_ID11732 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAAT (tRNA-?) - not tested Esalsugineum173_1568_rc REXdb_ID5953 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 - - not tested Esalsugineum173_1571_rc REXdb_ID2464 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1573 REXdb_ID5162 Ty1/copia_CL200 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 - - not tested Esalsugineum173_1574_rc REXdb_ID5834 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1585 REXdb_ID8782 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGG (tRNA-Lys) - not tested Esalsugineum173_1586_rc REXdb_ID9452 Ty3/gypsy_CL051 (21) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCGAA (tRNA-Arg) - not tested Esalsugineum173_1587 REXdb_ID4313 Ty1/copia_CL075 (12) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Esalsugineum173_1588_rc REXdb_ID4314 Ty1/copia_CL088 (10) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Esalsugineum173_159 REXdb_ID5801 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGTCA (tRNA-Asp) - not tested Esalsugineum173_1592 REXdb_ID13070 Ty3/gypsy_CL278 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Esalsugineum173_1596 REXdb_ID5878 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1599 REXdb_ID2807 Ty1/copia_CL152 (6) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_16 REXdb_ID2465 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1600_rc REXdb_ID11618 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATTAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1606 REXdb_ID9604 Ty3/gypsy_CL065 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCTA (tRNA-Lys) - not tested Esalsugineum173_1608 REXdb_ID11551 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_161 REXdb_ID12851 Ty3/gypsy_CL282 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Esalsugineum173_1610 REXdb_ID6004 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_1611_rc REXdb_ID11817 Ty3/gypsy_CL082 (12) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_1620_rc REXdb_ID2466 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1621 REXdb_ID2467 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1623_rc REXdb_ID9473 Ty3/gypsy_CL088 (11) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Esalsugineum173_1625_rc REXdb_ID5163 Ty1/copia_CL504 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_1626_rc REXdb_ID3179 Ty1/copia_CL190 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Esalsugineum173_1627_rc REXdb_ID2468 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1628_rc REXdb_ID2469 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1629 REXdb_ID428 Ty1/copia_CL187 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGCGGATCCAG (tRNA-Phe) - not tested Esalsugineum173_1632 REXdb_ID2470 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1634 REXdb_ID11585 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAACC (tRNA-Met) - not tested Esalsugineum173_1636_rc REXdb_ID5887 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_1639 REXdb_ID4684 Ty1/copia_CL271 (4) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 4 - CTTAATTCAAAAT not tested Esalsugineum173_164_rc REXdb_ID2472 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1640 REXdb_ID11523 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Esalsugineum173_1643_rc REXdb_ID11701 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_1644_rc REXdb_ID8781 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 4 TGGCGTCGTCTGTGGG (tRNA-Lys) - not tested Esalsugineum173_1647_rc REXdb_ID2471 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1649_rc REXdb_ID11619 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1650_rc REXdb_ID11559 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1651_rc REXdb_ID11571 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1653_rc REXdb_ID13492 Ty3/gypsy_CL283 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGGTGAAG (tRNA-Phe) - not tested Esalsugineum173_1656 REXdb_ID2473 Ty1/copia_CL257 (4) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - - Esalsugineum173_1657_rc REXdb_ID4315 Ty1/copia_CL088 (10) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Esalsugineum173_1658 REXdb_ID5994 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 6 TGGCGCCGTTGCCGGAGA (tRNA-Asp) - not tested Esalsugineum173_1662_rc REXdb_ID5913 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_1663 REXdb_ID9605 Ty3/gypsy_CL065 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - + - - 5 TGGGGCGAAGAG (tRNA-Ser) - not tested Esalsugineum173_1664_rc REXdb_ID4316 Ty1/copia_CL075 (12) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Esalsugineum173_1666_rc REXdb_ID8801 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Esalsugineum173_1667_rc REXdb_ID9455 Ty3/gypsy_CL051 (21) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGAAGGGG (tRNA-Arg) - not tested Esalsugineum173_1668 REXdb_ID9599 Ty3/gypsy_CL065 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCTA (tRNA-Lys) - not tested Esalsugineum173_1671_rc REXdb_ID4317 Ty1/copia_CL088 (10) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Esalsugineum173_1672 REXdb_ID2474 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1674 REXdb_ID9447 Ty3/gypsy_CL051 (21) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Esalsugineum173_1676 REXdb_ID5869 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCG (tRNA-Asp) - not tested Esalsugineum173_1678 REXdb_ID5976 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_1679 REXdb_ID5900 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 - - not tested Esalsugineum173_168_rc REXdb_ID5808 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGTGCCGTTGCCA (tRNA-Asp) - not tested Esalsugineum173_1685 REXdb_ID8792 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCATCTGTGGGGA (tRNA-Lys) - not tested Esalsugineum173_1687 REXdb_ID11695 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_169_rc REXdb_ID5164 Ty1/copia_CL186 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTAA (tRNA-Met) - not tested Esalsugineum173_1690 REXdb_ID5973 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_1692_rc REXdb_ID11505 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_1693_rc REXdb_ID2475 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1696_rc REXdb_ID2476 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1699 REXdb_ID8775 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Esalsugineum173_17_rc REXdb_ID5901 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGACC (tRNA-Asp) - not tested Esalsugineum173_1700 REXdb_ID8785 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Esalsugineum173_1706_rc REXdb_ID5883 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1709_rc REXdb_ID13494 Ty3/gypsy_CL284 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGGTGAGCGTCG (tRNA-Phe) - not tested Esalsugineum173_1710_rc REXdb_ID11740 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_1711_rc REXdb_ID5797 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1712_rc REXdb_ID429 Ty1/copia_CL502 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_1714_rc REXdb_ID5792 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1716_rc REXdb_ID11517 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + + - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Esalsugineum173_172_rc REXdb_ID2478 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1720_rc REXdb_ID11546 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1729_rc REXdb_ID2477 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_173_rc REXdb_ID11573 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Esalsugineum173_1731 REXdb_ID11625 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1733_rc REXdb_ID5781 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1738 REXdb_ID5798 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1741 REXdb_ID5986 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAAC (tRNA-Asp) - not tested Esalsugineum173_1743 REXdb_ID5840 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAAG (tRNA-Asn) - not tested Esalsugineum173_1744_rc REXdb_ID5778 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1745 REXdb_ID5761 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1746_rc REXdb_ID5893 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 - - not tested Esalsugineum173_1750 REXdb_ID5958 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTGCCGGGGA (tRNA-Asp) - not tested Esalsugineum173_1751_rc REXdb_ID11540 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGGGCC (tRNA-Met) - not tested Esalsugineum173_1756 REXdb_ID5837 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1760_rc REXdb_ID11568 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1763_rc REXdb_ID5875 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila - + + + + - - - - - not tested not tested 4 - - not tested Esalsugineum173_1764_rc REXdb_ID11622 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1767_rc REXdb_ID2479 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1768 REXdb_ID11613 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1772 REXdb_ID2480 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1774_rc REXdb_ID2481 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1775 REXdb_ID2482 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1776_rc REXdb_ID430 Ty1/copia_CL359 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAGA (tRNA-Met) - not tested Esalsugineum173_1778 REXdb_ID2483 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1779_rc REXdb_ID2484 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_178 REXdb_ID11521 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Esalsugineum173_1780 REXdb_ID431 Ty1/copia_CL505 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Esalsugineum173_1781_rc REXdb_ID13073 Ty3/gypsy_CL285 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCAGGTTCGA (tRNA-Met) - not tested Esalsugineum173_1782_rc REXdb_ID5948 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGACC (tRNA-Asp) - not tested Esalsugineum173_1784_rc REXdb_ID2485 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1785 REXdb_ID2486 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1786_rc REXdb_ID9601 Ty3/gypsy_CL065 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGGGCTAAGAG (tRNA-?) - not tested Esalsugineum173_1787_rc REXdb_ID5928 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCG (tRNA-Asp) - not tested Esalsugineum173_1791_rc REXdb_ID5980 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 - - not tested Esalsugineum173_1793_rc REXdb_ID5802 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 4 - - not tested Esalsugineum173_1794 REXdb_ID11601 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Esalsugineum173_1795 REXdb_ID11566 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1796_rc REXdb_ID5881 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1797 REXdb_ID9454 Ty3/gypsy_CL051 (21) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGAAGGGG (tRNA-Arg) - not tested Esalsugineum173_180_rc REXdb_ID3180 Ty1/copia_CL499 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_1805 REXdb_ID5786 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1809 REXdb_ID5782 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_181_rc REXdb_ID6005 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_1810_rc REXdb_ID5985 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 - - not tested Esalsugineum173_1812 REXdb_ID2487 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1813 REXdb_ID2488 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_1814 REXdb_ID5920 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_1815 REXdb_ID11709 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Esalsugineum173_1816 REXdb_ID5970 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGAGA (tRNA-Asp) - not tested Esalsugineum173_1817 REXdb_ID5974 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_182 REXdb_ID13629 Ty3/gypsy_CL435 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Esalsugineum173_1822 REXdb_ID5977 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_1824_rc REXdb_ID11710 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Esalsugineum173_1825_rc REXdb_ID432 Ty1/copia_CL187 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 - - not tested Esalsugineum173_1827 REXdb_ID11714 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Esalsugineum173_1829_rc REXdb_ID11498 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_184 REXdb_ID5779 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - + - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1844 REXdb_ID11511 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Esalsugineum173_1848 REXdb_ID8790 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Esalsugineum173_1849 REXdb_ID11960 Ty3/gypsy_CL436 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_185_rc REXdb_ID5793 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_1851_rc REXdb_ID11513 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Esalsugineum173_1858_rc REXdb_ID11961 Ty3/gypsy_CL437 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGACAGA (tRNA-Met) - not tested Esalsugineum173_1859_rc REXdb_ID5954 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_186 REXdb_ID5998 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGAGA (tRNA-Asp) - not tested Esalsugineum173_1868 REXdb_ID11629 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1869 REXdb_ID11693 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_1870_rc REXdb_ID5931 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_1871 REXdb_ID6010 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_189_rc REXdb_ID5884 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_19 REXdb_ID433 Ty1/copia_CL359 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAGA (tRNA-Met) - not tested Esalsugineum173_1902_rc REXdb_ID434 Ty1/copia_CL032 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCCAGGTTAC (tRNA-Met) - not tested Esalsugineum173_1903_rc REXdb_ID5780 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_193_rc REXdb_ID5930 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGACC (tRNA-Asp) - not tested Esalsugineum173_1933_rc REXdb_ID435 Ty1/copia_CL032 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Esalsugineum173_1937 REXdb_ID11610 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_194_rc REXdb_ID11753 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_195 REXdb_ID5906 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGTGCCGTTGC (tRNA-Asp) - not tested Esalsugineum173_197 REXdb_ID9463 Ty3/gypsy_CL051 (21) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 - - not tested Esalsugineum173_1973_rc REXdb_ID436 Ty1/copia_CL032 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 6 - - not tested Esalsugineum173_1976_rc REXdb_ID437 Ty1/copia_CL032 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCA (tRNA-Met) - not tested Esalsugineum173_198 REXdb_ID11514 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Esalsugineum173_20 REXdb_ID2490 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_200 REXdb_ID5807 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_203_rc REXdb_ID5989 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_205_rc REXdb_ID5821 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCACCGTTGCCA (tRNA-Asp) - not tested Esalsugineum173_206_rc REXdb_ID11590 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Esalsugineum173_207 REXdb_ID5768 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - + - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_209_rc REXdb_ID5813 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_210_rc REXdb_ID9451 Ty3/gypsy_CL051 (21) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGAAGGGG (tRNA-Arg) - not tested Esalsugineum173_212 REXdb_ID5936 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 4 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_213_rc REXdb_ID11577 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_219_rc REXdb_ID11818 Ty3/gypsy_CL082 (12) Class_I::LTR::Ty3/gypsy::chromovirus::CRM - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCC (tRNA-Met) - not tested Esalsugineum173_22 REXdb_ID3181 Ty1/copia_CL501 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATTAGAGCT (tRNA-Met) - not tested Esalsugineum173_220_rc REXdb_ID13630 Ty3/gypsy_CL438 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Esalsugineum173_221 REXdb_ID11599 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - not tested Esalsugineum173_222 REXdb_ID5983 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 - - not tested Esalsugineum173_23 REXdb_ID5903 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCG (tRNA-Asp) - not tested Esalsugineum173_235 REXdb_ID5814 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_238_rc REXdb_ID11516 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Esalsugineum173_239_rc REXdb_ID5934 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_24 REXdb_ID5940 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGG (tRNA-Asp) - not tested Esalsugineum173_241 REXdb_ID2491 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_242 REXdb_ID8776 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACTGTGGGGA (tRNA-Lys) - not tested Esalsugineum173_243_rc REXdb_ID2492 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_246_rc REXdb_ID11563 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_250_rc REXdb_ID2493 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_253_rc REXdb_ID2494 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CATTATCAGCACGATA (tRNA-Ile) Esalsugineum173_254_rc REXdb_ID11581 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Esalsugineum173_255 REXdb_ID2495 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_256 REXdb_ID13496 Ty3/gypsy_CL286 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Esalsugineum173_257 REXdb_ID2496 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_258 REXdb_ID11536 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - not tested Esalsugineum173_26_rc REXdb_ID11602 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - not tested Esalsugineum173_265_rc REXdb_ID5999 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 TGGATAAATGCA (tRNA-?) - not tested Esalsugineum173_266_rc REXdb_ID5932 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCTGTTGCCGGGGA (tRNA-Asp) - not tested Esalsugineum173_269 REXdb_ID11509 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Esalsugineum173_27_rc REXdb_ID11718 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Esalsugineum173_270_rc REXdb_ID5897 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCG (tRNA-Asp) - not tested Esalsugineum173_274_rc REXdb_ID11583 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Esalsugineum173_277_rc REXdb_ID3182 Ty1/copia_CL062 (14) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 - - not tested Esalsugineum173_280 REXdb_ID5902 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCG (tRNA-Asp) - not tested Esalsugineum173_282 REXdb_ID13315 Ty3/gypsy_CL135 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGTCGTG (tRNA-?) - not tested Esalsugineum173_286 REXdb_ID11741 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_29 REXdb_ID6006 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_290_rc REXdb_ID5908 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGACC (tRNA-Asp) - not tested Esalsugineum173_292 REXdb_ID11587 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - not tested not tested 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Esalsugineum173_293 REXdb_ID5787 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_294 REXdb_ID9467 Ty3/gypsy_CL088 (11) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Esalsugineum173_298_rc REXdb_ID11594 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - not tested Esalsugineum173_3_rc REXdb_ID2500 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_30 REXdb_ID2808 Ty1/copia_CL152 (6) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTAGCAGAGCCA (tRNA-Met) - not tested Esalsugineum173_302 REXdb_ID11705 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_303 REXdb_ID2497 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_305 REXdb_ID2498 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_306_rc REXdb_ID5914 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGAA (tRNA-Asp) - not tested Esalsugineum173_309 REXdb_ID13425 Ty3/gypsy_CL214 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGAC (tRNA-Met) - not tested Esalsugineum173_31 REXdb_ID5762 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_315_rc REXdb_ID11708 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Esalsugineum173_317_rc REXdb_ID6002 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGTCGGGGA (tRNA-Asp) - not tested Esalsugineum173_323_rc REXdb_ID8794 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTGTCTGTGGGGA (tRNA-Lys) - not tested Esalsugineum173_33_rc REXdb_ID5922 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_332 REXdb_ID5774 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 4 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_335_rc REXdb_ID11724 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Esalsugineum173_337 REXdb_ID8797 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - + not tested not tested 5 TGGGGAAAACGA (tRNA-His) - not tested Esalsugineum173_338 REXdb_ID9466 Ty3/gypsy_CL088 (11) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTAGGGC (tRNA-Lys) - not tested Esalsugineum173_340 REXdb_ID5809 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGCCGTTGCC (tRNA-Asp) - not tested Esalsugineum173_346_rc REXdb_ID5984 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGAA (tRNA-Asp) - not tested Esalsugineum173_347_rc REXdb_ID5866 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_348_rc REXdb_ID5832 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_350 REXdb_ID438 Ty1/copia_CL358 (3) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGACG (tRNA-?) - not tested Esalsugineum173_351_rc REXdb_ID5981 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 - - not tested Esalsugineum173_352_rc REXdb_ID5783 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_354 REXdb_ID6008 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_358 REXdb_ID9448 Ty3/gypsy_CL051 (21) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGAAGGGG (tRNA-Arg) - not tested Esalsugineum173_359_rc REXdb_ID11525 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Esalsugineum173_361 REXdb_ID3183 Ty1/copia_CL062 (14) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_365 REXdb_ID13498 Ty3/gypsy_CL152 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Esalsugineum173_369_rc REXdb_ID11591 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - not tested not tested 5 TGGTATCAGAGCCACG (tRNA-Met) - not tested Esalsugineum173_371 REXdb_ID11552 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_372 REXdb_ID5874 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_373_rc REXdb_ID5862 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_376_rc REXdb_ID11598 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 - - not tested Esalsugineum173_380_rc REXdb_ID5891 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_391_rc REXdb_ID5855 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_393_rc REXdb_ID2499 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_397_rc REXdb_ID5851 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_398 REXdb_ID5849 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_4_rc REXdb_ID5167 Ty1/copia_CL357 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTAGCAGAGCCAGGTT (tRNA-Met) - not tested Esalsugineum173_40 REXdb_ID13264 Ty3/gypsy_CL099 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Esalsugineum173_402_rc REXdb_ID11700 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Esalsugineum173_406 REXdb_ID2501 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_407 REXdb_ID5794 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_41 REXdb_ID2502 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 4 - - - Esalsugineum173_412_rc REXdb_ID5990 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_417 REXdb_ID5959 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_418_rc REXdb_ID5860 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGAA (tRNA-Asp) - not tested Esalsugineum173_419_rc REXdb_ID5803 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - + - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_42 REXdb_ID2503 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_420 REXdb_ID5823 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_423 REXdb_ID5996 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_428_rc REXdb_ID11616 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_429 REXdb_ID5987 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_430 REXdb_ID5962 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCTGGGGAC (tRNA-Asp) - not tested Esalsugineum173_431_rc REXdb_ID5971 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_432_rc REXdb_ID11690 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_433_rc REXdb_ID5843 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_44_rc REXdb_ID2504 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_440_rc REXdb_ID5978 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_441_rc REXdb_ID5963 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Esalsugineum173_443_rc REXdb_ID11877 Ty3/gypsy_CL134 (6) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAAT (tRNA-?) - not tested Esalsugineum173_445 REXdb_ID5949 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_446 REXdb_ID5967 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_448 REXdb_ID439 Ty1/copia_CL359 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Esalsugineum173_455_rc REXdb_ID5888 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCATTGCCA (tRNA-Asp) - not tested Esalsugineum173_458 REXdb_ID13631 Ty3/gypsy_CL439 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGTCAAG (tRNA-Arg) - not tested Esalsugineum173_46 REXdb_ID2809 Ty1/copia_CL152 (6) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_460_rc REXdb_ID5784 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_461_rc REXdb_ID2505 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_462_rc REXdb_ID8787 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Esalsugineum173_464_rc REXdb_ID5165 Ty1/copia_CL200 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTA (tRNA-Met) - not tested Esalsugineum173_468_rc REXdb_ID13632 Ty3/gypsy_CL440 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Esalsugineum173_47_rc REXdb_ID4685 Ty1/copia_CL271 (4) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAACTCAATAAATC not tested Esalsugineum173_470 REXdb_ID5838 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_473_rc REXdb_ID3184 Ty1/copia_CL062 (14) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_474_rc REXdb_ID11574 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_475 REXdb_ID11575 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_481 REXdb_ID13495 Ty3/gypsy_CL284 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGTCGTG (tRNA-?) - not tested Esalsugineum173_483 REXdb_ID2506 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_484 REXdb_ID2507 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_489 REXdb_ID11824 Ty3/gypsy_CL082 (12) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 - - not tested Esalsugineum173_492 REXdb_ID5166 Ty1/copia_CL356 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTCG (tRNA-Met) - not tested Esalsugineum173_493_rc REXdb_ID2508 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - TGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_495_rc REXdb_ID4318 Ty1/copia_CL075 (12) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Esalsugineum173_497_rc REXdb_ID5889 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 - - not tested Esalsugineum173_499_rc REXdb_ID5836 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_5_rc REXdb_ID2514 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCATGA (tRNA-Ile) Esalsugineum173_50 REXdb_ID440 Ty1/copia_CL505 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_501_rc REXdb_ID4319 Ty1/copia_CL088 (10) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + + - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Esalsugineum173_505_rc REXdb_ID3185 Ty1/copia_CL062 (14) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_508_rc REXdb_ID2509 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_509 REXdb_ID2510 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_51_rc REXdb_ID5982 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_510 REXdb_ID5910 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGTCGGGGA (tRNA-Asp) - not tested Esalsugineum173_511 REXdb_ID8773 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTGACTG (tRNA-?) - not tested Esalsugineum173_515_rc REXdb_ID8770 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Esalsugineum173_516_rc REXdb_ID5885 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_517 REXdb_ID5168 Ty1/copia_CL357 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGACAGGTT (tRNA-Met) - not tested Esalsugineum173_519 REXdb_ID11567 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Esalsugineum173_520_rc REXdb_ID5944 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTTC (tRNA-Asp) - not tested Esalsugineum173_522_rc REXdb_ID5815 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAAG (tRNA-Asn) - not tested Esalsugineum173_524_rc REXdb_ID4320 Ty1/copia_CL075 (12) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCGG (tRNA-Met) - not tested Esalsugineum173_526 REXdb_ID11582 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Esalsugineum173_528 REXdb_ID2511 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_529 REXdb_ID6011 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTTCCGGGGA (tRNA-Asp) - not tested Esalsugineum173_533 REXdb_ID8777 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Esalsugineum173_534_rc REXdb_ID5169 Ty1/copia_CL255 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Esalsugineum173_536 REXdb_ID11548 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_538_rc REXdb_ID2512 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_54 REXdb_ID13426 Ty3/gypsy_CL214 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGAC (tRNA-Met) - not tested Esalsugineum173_540 REXdb_ID8778 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Esalsugineum173_541_rc REXdb_ID3186 Ty1/copia_CL125 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Esalsugineum173_545_rc REXdb_ID13500 Ty3/gypsy_CL287 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Esalsugineum173_546 REXdb_ID2810 Ty1/copia_CL152 (6) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_548 REXdb_ID9445 Ty3/gypsy_CL051 (21) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Esalsugineum173_55_rc REXdb_ID5870 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCG (tRNA-Asp) - not tested Esalsugineum173_551_rc REXdb_ID5895 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCG (tRNA-Asp) - not tested Esalsugineum173_554 REXdb_ID5170 Ty1/copia_CL189 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAAGTT (tRNA-Met) - not tested Esalsugineum173_556 REXdb_ID11692 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCACAGCCA (tRNA-Met) - not tested Esalsugineum173_559 REXdb_ID2513 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_561 REXdb_ID11501 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_562_rc REXdb_ID11617 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATTAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_565_rc REXdb_ID13501 Ty3/gypsy_CL287 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Esalsugineum173_566_rc REXdb_ID5968 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_567 REXdb_ID5921 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGCCGTTGC (tRNA-Asp) - not tested Esalsugineum173_568_rc REXdb_ID5960 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_569 REXdb_ID5810 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_57 REXdb_ID9469 Ty3/gypsy_CL088 (11) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Esalsugineum173_570_rc REXdb_ID5788 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_571_rc REXdb_ID11526 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - not tested Esalsugineum173_574_rc REXdb_ID5872 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_575_rc REXdb_ID5830 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_576_rc REXdb_ID5816 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_577 REXdb_ID9457 Ty3/gypsy_CL051 (21) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGTCAGA (tRNA-?) - not tested Esalsugineum173_578_rc REXdb_ID5785 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_58_rc REXdb_ID9472 Ty3/gypsy_CL088 (11) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCATGAG (tRNA-Lys) - not tested Esalsugineum173_584 REXdb_ID11503 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_588_rc REXdb_ID11555 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_592 REXdb_ID5852 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_593_rc REXdb_ID5882 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_60 REXdb_ID9459 Ty3/gypsy_CL051 (21) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Esalsugineum173_601_rc REXdb_ID5859 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 - - not tested Esalsugineum173_603 REXdb_ID11620 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_604 REXdb_ID11694 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Esalsugineum173_605 REXdb_ID5871 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_606 REXdb_ID11593 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Esalsugineum173_607_rc REXdb_ID11611 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_610 REXdb_ID5800 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - + - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_613 REXdb_ID4321 Ty1/copia_CL075 (12) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Esalsugineum173_616_rc REXdb_ID11520 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Esalsugineum173_617_rc REXdb_ID2515 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_618 REXdb_ID6000 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAGAGAT (tRNA-Asp) - not tested Esalsugineum173_620 REXdb_ID11560 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_621_rc REXdb_ID11561 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Esalsugineum173_624 REXdb_ID13633 Ty3/gypsy_CL441 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGTCGTG (tRNA-?) - not tested Esalsugineum173_625 REXdb_ID11707 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Esalsugineum173_627 REXdb_ID9610 Ty3/gypsy_CL065 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCACACCGTGGGGCT (tRNA-Lys) - not tested Esalsugineum173_628_rc REXdb_ID9470 Ty3/gypsy_CL088 (11) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - + not tested not tested 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Esalsugineum173_629 REXdb_ID3187 Ty1/copia_CL062 (14) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_630_rc REXdb_ID4322 Ty1/copia_CL075 (12) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGA (tRNA-Met) - not tested Esalsugineum173_631_rc REXdb_ID11713 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Esalsugineum173_634 REXdb_ID2516 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 4 - - - Esalsugineum173_635 REXdb_ID3188 Ty1/copia_CL125 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Esalsugineum173_636_rc REXdb_ID9461 Ty3/gypsy_CL051 (21) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Esalsugineum173_637 REXdb_ID5171 Ty1/copia_CL255 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Esalsugineum173_638 REXdb_ID3189 Ty1/copia_CL062 (14) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_640_rc REXdb_ID2517 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_641 REXdb_ID5172 Ty1/copia_CL504 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_642_rc REXdb_ID9611 Ty3/gypsy_CL065 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCTA (tRNA-Lys) - not tested Esalsugineum173_644_rc REXdb_ID2518 Ty1/copia_CL257 (4) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 4 - - - Esalsugineum173_647_rc REXdb_ID2519 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CACGTTATCAGCACGAT (tRNA-Ile) Esalsugineum173_65 REXdb_ID11569 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_650 REXdb_ID2520 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_651 REXdb_ID2521 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_652_rc REXdb_ID2522 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_653 REXdb_ID2523 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_654_rc REXdb_ID2524 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_655 REXdb_ID2525 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_658_rc REXdb_ID2526 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_659_rc REXdb_ID5173 Ty1/copia_CL161 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTGCGGATTT (tRNA-Pro) - not tested Esalsugineum173_660 REXdb_ID11588 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAGGTT (tRNA-Met) - not tested Esalsugineum173_661 REXdb_ID2527 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_662 REXdb_ID2528 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_664 REXdb_ID3190 Ty1/copia_CL190 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Esalsugineum173_669_rc REXdb_ID2529 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_670_rc REXdb_ID4323 Ty1/copia_CL075 (12) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Esalsugineum173_671_rc REXdb_ID2530 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_672 REXdb_ID2531 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_674 REXdb_ID2532 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_675 REXdb_ID441 Ty1/copia_CL358 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Esalsugineum173_677_rc REXdb_ID11691 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_680 REXdb_ID11592 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - not tested Esalsugineum173_684 REXdb_ID9603 Ty3/gypsy_CL065 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - + - - 5 TGGCGCCCACCGTGGGGC (tRNA-Lys) - not tested Esalsugineum173_685 REXdb_ID5174 Ty1/copia_CL506 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGACAGGTT (tRNA-Met) - not tested Esalsugineum173_686 REXdb_ID11687 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_688_rc REXdb_ID13319 Ty3/gypsy_CL135 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGTCGTG (tRNA-?) - not tested Esalsugineum173_689 REXdb_ID5175 Ty1/copia_CL506 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Esalsugineum173_692_rc REXdb_ID2533 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_698_rc REXdb_ID5890 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + + - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_70 REXdb_ID442 Ty1/copia_CL032 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCCAGGTTC (tRNA-Met) - not tested Esalsugineum173_704_rc REXdb_ID11556 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_706 REXdb_ID5850 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_709 REXdb_ID5877 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCG (tRNA-Asp) - not tested Esalsugineum173_714_rc REXdb_ID5769 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_719_rc REXdb_ID11702 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_720_rc REXdb_ID11586 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Esalsugineum173_723 REXdb_ID5829 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_724 REXdb_ID5804 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_726_rc REXdb_ID5805 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAAG (tRNA-Asn) - not tested Esalsugineum173_727 REXdb_ID5955 not clustered Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + - + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_729_rc REXdb_ID5926 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCTA (tRNA-Asp) - not tested Esalsugineum173_730_rc REXdb_ID13497 Ty3/gypsy_CL286 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Esalsugineum173_731 REXdb_ID11553 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_733_rc REXdb_ID11500 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_736 REXdb_ID5824 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_738_rc REXdb_ID5935 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_74_rc REXdb_ID5899 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCG (tRNA-Asp) - not tested Esalsugineum173_740_rc REXdb_ID5819 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_741 REXdb_ID5898 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_749 REXdb_ID11558 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_75 REXdb_ID11630 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_751_rc REXdb_ID11698 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Esalsugineum173_753 REXdb_ID11507 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Esalsugineum173_754_rc REXdb_ID5892 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_755_rc REXdb_ID11519 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGGGCAC (tRNA-Leu) - not tested Esalsugineum173_759_rc REXdb_ID5969 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 - - not tested Esalsugineum173_764 REXdb_ID5825 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 4 - - not tested Esalsugineum173_765 REXdb_ID5176 Ty1/copia_CL503 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Esalsugineum173_766 REXdb_ID13634 Ty3/gypsy_CL442 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Esalsugineum173_767_rc REXdb_ID2534 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_769 REXdb_ID5177 Ty1/copia_CL507 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTT (tRNA-Met) - not tested Esalsugineum173_771 REXdb_ID11749 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGATT (tRNA-Met) - not tested Esalsugineum173_772_rc REXdb_ID5178 Ty1/copia_CL161 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_773_rc REXdb_ID9598 Ty3/gypsy_CL065 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 - - not tested Esalsugineum173_774 REXdb_ID2535 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_776 REXdb_ID11711 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Esalsugineum173_777_rc REXdb_ID4686 Ty1/copia_CL271 (4) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAACTCAATAAATC not tested Esalsugineum173_779_rc REXdb_ID5179 Ty1/copia_CL150 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGACAGGTT (tRNA-Met) - not tested Esalsugineum173_782 REXdb_ID2536 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CACGTTATCAGCACGAT (tRNA-Ile) Esalsugineum173_785_rc REXdb_ID4324 Ty1/copia_CL088 (10) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAAC (tRNA-Met) - not tested Esalsugineum173_786_rc REXdb_ID11816 Ty3/gypsy_CL082 (12) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_787_rc REXdb_ID11873 Ty3/gypsy_CL134 (6) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Esalsugineum173_788_rc REXdb_ID2537 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_79 REXdb_ID11537 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_790_rc REXdb_ID13499 Ty3/gypsy_CL152 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCGGAAACGA (tRNA-Arg) - not tested Esalsugineum173_791_rc REXdb_ID9761 Ty3/gypsy_CL443 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCTTGAAGGAGGG (tRNA-Asn) - not tested Esalsugineum173_794 REXdb_ID2538 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_795_rc REXdb_ID2539 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_796_rc REXdb_ID11703 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_80_rc REXdb_ID13074 Ty3/gypsy_CL285 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Esalsugineum173_801_rc REXdb_ID11538 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_806 REXdb_ID6007 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_808_rc REXdb_ID3191 Ty1/copia_CL062 (14) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_809_rc REXdb_ID3192 Ty1/copia_CL062 (14) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_811_rc REXdb_ID5991 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGTCGGGGA (tRNA-Asp) - not tested Esalsugineum173_813_rc REXdb_ID8780 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCTGTCTGTGGGGA (tRNA-Lys) - not tested Esalsugineum173_815 REXdb_ID11744 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Esalsugineum173_816_rc REXdb_ID9462 Ty3/gypsy_CL051 (21) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCACGCCAGGTAGGGG (tRNA-Arg) - not tested Esalsugineum173_817_rc REXdb_ID5822 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_820 REXdb_ID443 Ty1/copia_CL032 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCGA (tRNA-Met) - not tested Esalsugineum173_822 REXdb_ID4687 Ty1/copia_CL271 (4) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAACTCAATAAATC not tested Esalsugineum173_826_rc REXdb_ID11614 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_827_rc REXdb_ID5886 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_829 REXdb_ID11572 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_83_rc REXdb_ID9607 Ty3/gypsy_CL065 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCCACCGTGGGGC (tRNA-Lys) - not tested Esalsugineum173_836 REXdb_ID4325 Ty1/copia_CL075 (12) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Esalsugineum173_838 REXdb_ID13635 Ty3/gypsy_CL444 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Esalsugineum173_840 REXdb_ID8786 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Esalsugineum173_853_rc REXdb_ID11612 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_855_rc REXdb_ID5180 Ty1/copia_CL127 (7) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTTCGGT (tRNA-Undet) - not tested Esalsugineum173_856 REXdb_ID11723 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_859_rc REXdb_ID5181 Ty1/copia_CL161 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTGCGGATTT (tRNA-Pro) - not tested Esalsugineum173_860_rc REXdb_ID5904 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCG (tRNA-Asp) - not tested Esalsugineum173_862 REXdb_ID8800 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Esalsugineum173_866 REXdb_ID4326 Ty1/copia_CL088 (10) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAAC (tRNA-Met) - not tested Esalsugineum173_868 REXdb_ID11697 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Esalsugineum173_87 REXdb_ID2540 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_873_rc REXdb_ID11747 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGACAG (tRNA-Met) - not tested Esalsugineum173_874 REXdb_ID13493 Ty3/gypsy_CL283 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGGCGAT (tRNA-?) - not tested Esalsugineum173_875_rc REXdb_ID5858 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_877 REXdb_ID5182 Ty1/copia_CL270 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTT (tRNA-Met) - not tested Esalsugineum173_88_rc REXdb_ID11543 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_884_rc REXdb_ID11499 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_888_rc REXdb_ID11750 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGATT (tRNA-Met) - not tested Esalsugineum173_89_rc REXdb_ID5951 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_890_rc REXdb_ID5789 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_891 REXdb_ID5826 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - + - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_9 REXdb_ID2541 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_902_rc REXdb_ID11524 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Esalsugineum173_905_rc REXdb_ID5972 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCACCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_906_rc REXdb_ID11704 Ty3/gypsy_CL036 (44) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 - - not tested Esalsugineum173_907 REXdb_ID4327 Ty1/copia_CL075 (12) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTAGCAGAGC (tRNA-Met) - not tested Esalsugineum173_913 REXdb_ID3193 Ty1/copia_CL190 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Esalsugineum173_914_rc REXdb_ID2542 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAAGCTC (tRNA-Ile) Esalsugineum173_915 REXdb_ID5183 Ty1/copia_CL662 (1) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_916_rc REXdb_ID13636 Ty3/gypsy_CL445 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGGTGAC (tRNA-Phe) - not tested Esalsugineum173_92 REXdb_ID3194 Ty1/copia_CL458 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Esalsugineum173_920 REXdb_ID2543 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_922 REXdb_ID5933 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_923_rc REXdb_ID5184 Ty1/copia_CL270 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Esalsugineum173_924_rc REXdb_ID13491 Ty3/gypsy_CL281 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_925_rc REXdb_ID3195 Ty1/copia_CL508 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Esalsugineum173_926_rc REXdb_ID3196 Ty1/copia_CL508 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Esalsugineum173_928 REXdb_ID5947 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCG (tRNA-Asp) - not tested Esalsugineum173_929 REXdb_ID12850 Ty3/gypsy_CL282 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Esalsugineum173_931_rc REXdb_ID5185 Ty1/copia_CL161 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Esalsugineum173_933_rc REXdb_ID9460 Ty3/gypsy_CL051 (21) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCACCAGG (tRNA-?) - not tested Esalsugineum173_935 REXdb_ID5912 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_936 REXdb_ID5186 Ty1/copia_CL200 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Esalsugineum173_937 REXdb_ID5917 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_938_rc REXdb_ID13637 Ty3/gypsy_CL446 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCGTTCGT (tRNA-?) - not tested Esalsugineum173_939 REXdb_ID5187 Ty1/copia_CL507 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_94_rc REXdb_ID5839 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_942 REXdb_ID9449 Ty3/gypsy_CL051 (21) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGA (tRNA-Arg) - not tested Esalsugineum173_944_rc REXdb_ID11752 Ty3/gypsy_CL041 (33) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGATT (tRNA-Met) - not tested Esalsugineum173_945_rc REXdb_ID5188 Ty1/copia_CL200 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Esalsugineum173_946_rc REXdb_ID2811 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Esalsugineum173_949_rc REXdb_ID11596 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - not tested Esalsugineum173_95 REXdb_ID5975 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGAGGA (tRNA-Asp) - not tested Esalsugineum173_953_rc REXdb_ID2544 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_957_rc REXdb_ID8796 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - + - - 5 TGGCGCCGACTGTGGGGATT (tRNA-Lys) - not tested Esalsugineum173_962_rc REXdb_ID8793 Ty3/gypsy_CL019 (96) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Esalsugineum173_965_rc REXdb_ID5771 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila - + + + + - - - + - not tested not tested 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_967 REXdb_ID11578 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 4 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_974 REXdb_ID5965 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Esalsugineum173_978_rc REXdb_ID5189 Ty1/copia_CL150 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCTGAGC (tRNA-Val) - not tested Esalsugineum173_979 REXdb_ID2545 Ty1/copia_CL004 (147) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - TGTTATCAGCACGATA (tRNA-Ile) Esalsugineum173_98 REXdb_ID9465 Ty3/gypsy_CL088 (11) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Esalsugineum173_980 REXdb_ID11576 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_981 REXdb_ID9458 Ty3/gypsy_CL051 (21) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - + - - 5 TGGCGCGCCAGGAAGGGG (tRNA-Arg) - not tested Esalsugineum173_99_rc REXdb_ID11580 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Esalsugineum173_993_rc REXdb_ID5770 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_994_rc REXdb_ID5190 Ty1/copia_CL161 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Esalsugineum173_998 REXdb_ID5842 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAA (tRNA-Asn) - not tested Esalsugineum173_999 REXdb_ID9471 Ty3/gypsy_CL088 (11) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Fvesca226_100 REXdb_ID444 Ty1/copia_CL272 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Fvesca226_108 REXdb_ID7578 Ty3/gypsy_CL138 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Fvesca226_109 REXdb_ID445 Ty1/copia_CL272 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Fvesca226_117_rc REXdb_ID6754 Ty3/gypsy_CL447 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCTAGGGA (tRNA-Asp) - not tested Fvesca226_127_rc REXdb_ID13638 Ty3/gypsy_CL448 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Fvesca226_136 REXdb_ID12305 Ty3/gypsy_CL215 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCCTAGTT (tRNA-Met) - not tested Fvesca226_139_rc REXdb_ID2546 Ty1/copia_CL273 (4) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - TTATCAGCCCTTTGCTC (tRNA-Ile) Fvesca226_148_rc REXdb_ID2812 Ty1/copia_CL509 (2) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCGA (tRNA-Met) - not tested Fvesca226_152_rc REXdb_ID3197 Ty1/copia_CL263 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Fvesca226_160 REXdb_ID446 Ty1/copia_CL272 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Fvesca226_167_rc REXdb_ID2547 Ty1/copia_CL273 (4) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCAC (tRNA-Ile) Fvesca226_173_rc REXdb_ID2548 Ty1/copia_CL273 (4) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - - Fvesca226_184_rc REXdb_ID447 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Fvesca226_186 REXdb_ID448 Ty1/copia_CL274 (4) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAAACC (tRNA-?) - not tested Fvesca226_191_rc REXdb_ID2549 Ty1/copia_CL273 (4) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - - Fvesca226_197_rc REXdb_ID12316 Ty3/gypsy_CL449 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGTCT (tRNA-Met) - not tested Fvesca226_204 REXdb_ID9745 Ty3/gypsy_CL288 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Fvesca226_209 REXdb_ID449 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Fvesca226_216 REXdb_ID450 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Fvesca226_238_rc REXdb_ID12308 Ty3/gypsy_CL216 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 - - not tested Fvesca226_242_rc REXdb_ID9762 Ty3/gypsy_CL450 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGTGGGAATGGA (tRNA-Leu) - not tested Fvesca226_249 REXdb_ID451 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAAAGCA (tRNA-Ile) - not tested Fvesca226_258_rc REXdb_ID4688 Ty1/copia_CL510 (2) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - - not tested Fvesca226_263_rc REXdb_ID452 Ty1/copia_CL274 (4) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGCCT (tRNA-?) - not tested Fvesca226_268_rc REXdb_ID453 Ty1/copia_CL272 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Fvesca226_273 REXdb_ID7582 Ty3/gypsy_CL138 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTAGTGGGAC (tRNA-Arg) - not tested Fvesca226_275_rc REXdb_ID2550 Ty1/copia_CL046 (21) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Fvesca226_276 REXdb_ID13639 Ty3/gypsy_CL451 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Fvesca226_30 REXdb_ID5191 Ty1/copia_CL511 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Fvesca226_302_rc REXdb_ID3198 Ty1/copia_CL263 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Fvesca226_304 REXdb_ID454 Ty1/copia_CL274 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGTAG (tRNA-?) - not tested Fvesca226_308_rc REXdb_ID12309 Ty3/gypsy_CL216 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCA (tRNA-Met) - not tested Fvesca226_309 REXdb_ID5192 Ty1/copia_CL196 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Fvesca226_314 REXdb_ID6755 Ty3/gypsy_CL452 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 - - not tested Fvesca226_32 REXdb_ID3199 Ty1/copia_CL663 (1) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - not tested not tested 5 TGGTATCAGAGCC (tRNA-Met) - not tested Fvesca226_321_rc REXdb_ID13640 Ty3/gypsy_CL453 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Fvesca226_333_rc REXdb_ID13641 Ty3/gypsy_CL454 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATTCAGAG (tRNA-?) - not tested Fvesca226_342 REXdb_ID9763 Ty3/gypsy_CL455 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGAACTCCCACC (tRNA-Lys) - not tested Fvesca226_35 REXdb_ID9746 Ty3/gypsy_CL288 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - + 5 TGGCGTCGTCTGTGGGAA (tRNA-Lys) - not tested Fvesca226_381_rc REXdb_ID4689 Ty1/copia_CL510 (2) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTAAGACAGAAATTC not tested Fvesca226_387 REXdb_ID13642 Ty3/gypsy_CL456 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTTCCGATGC (tRNA-Glu) - not tested Fvesca226_388_rc REXdb_ID455 Ty1/copia_CL275 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTGTCTCTAA (tRNA-Ala) - not tested Fvesca226_398_rc REXdb_ID2813 Ty1/copia_CL509 (2) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Fvesca226_409 REXdb_ID456 Ty1/copia_CL274 (4) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGCCT (tRNA-?) - not tested Fvesca226_41_rc REXdb_ID11962 Ty3/gypsy_CL458 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 - - not tested Fvesca226_412_rc REXdb_ID457 Ty1/copia_CL512 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Fvesca226_414_rc REXdb_ID13643 Ty3/gypsy_CL457 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Fvesca226_428 REXdb_ID458 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Fvesca226_429 REXdb_ID7583 Ty3/gypsy_CL138 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Fvesca226_43_rc REXdb_ID12310 Ty3/gypsy_CL216 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCA (tRNA-Met) - not tested Fvesca226_447_rc REXdb_ID13087 Ty3/gypsy_CL459 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Fvesca226_45_rc REXdb_ID459 Ty1/copia_CL512 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Fvesca226_450 REXdb_ID7581 Ty3/gypsy_CL138 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTAGTGGGAC (tRNA-Arg) - not tested Fvesca226_460_rc REXdb_ID7579 Ty3/gypsy_CL138 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Fvesca226_461 REXdb_ID12317 Ty3/gypsy_CL460 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Fvesca226_463 REXdb_ID11963 Ty3/gypsy_CL461 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Fvesca226_490 REXdb_ID460 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Fvesca226_509 REXdb_ID461 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Fvesca226_66 REXdb_ID11941 Ty3/gypsy_CL289 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Fvesca226_67 REXdb_ID6756 Ty3/gypsy_CL462 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 - - not tested Fvesca226_69 REXdb_ID9764 Ty3/gypsy_CL463 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Fvesca226_76_rc REXdb_ID7580 Ty3/gypsy_CL138 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Fvesca226_77 REXdb_ID5193 Ty1/copia_CL360 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Fvesca226_87_rc REXdb_ID3200 Ty1/copia_CL664 (1) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Fvesca226_91 REXdb_ID11809 Ty3/gypsy_CL087 (11) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCTGAAG (tRNA-?) - not tested Fvesca226_97 REXdb_ID462 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested GEN_1731 REXdb_ID5386 Ty1/copia_CL494 (2) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - - - - - not tested - not tested GGTTAATGGGCCCAGC (1/2tRNA-Met) GEN_412 REXdb_ID5419 Ty3/gypsy_CL290 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::non-chromo-outgroup - + + + + - - - - - not tested not tested not tested not tested not tested not tested GEN_Amn-ichi REXdb_ID11319 Ty3/gypsy_CL464 (1) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-outgroup + + + + + - + - - - - - not tested not tested not tested not tested GEN_Amn-ni REXdb_ID11320 Ty3/gypsy_CL465 (1) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-outgroup + + + + + - + - - - - - not tested not tested not tested not tested GEN_Amn-san REXdb_ID11314 Ty3/gypsy_CL466 (1) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-outgroup + + + + + - + - - - - - not tested not tested not tested not tested GEN_Araco REXdb_ID3201 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - not tested not tested not tested not tested GEN_Athila4-1 REXdb_ID6775 Ty3/gypsy_CL004 (279) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - not tested not tested not tested not tested GEN_Bagy-1 REXdb_ID13107 Ty3/gypsy_CL467 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - not tested not tested not tested not tested GEN_Bagy-2 REXdb_ID6773 Ty3/gypsy_CL264 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - not tested not tested not tested not tested GEN_Batata REXdb_ID5194 Ty1/copia_CL665 (1) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - not tested not tested not tested not tested GEN_Beetle1 REXdb_ID11991 Ty3/gypsy_CL468 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - not tested not tested not tested not tested GEN_Blastopia REXdb_ID5420 Ty3/gypsy_CL469 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::non-chromo-outgroup + + + + + - - - - - - - not tested not tested not tested not tested GEN_Boudicca REXdb_ID5421 Ty3/gypsy_CL470 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::non-chromo-outgroup - + + + + - - - - - not tested not tested not tested not tested not tested not tested GEN_Cer2 REXdb_ID5422 Ty3/gypsy_CL471 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::non-chromo-outgroup - + + + + - - - + - not tested not tested not tested not tested not tested not tested GEN_Cer3 REXdb_ID5423 Ty3/gypsy_CL472 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::non-chromo-outgroup + + + + + - - - + - - - not tested not tested not tested not tested GEN_Cft-1 REXdb_ID11318 Ty3/gypsy_CL473 (1) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-outgroup + + + + + - + - - - - - not tested not tested not tested not tested GEN_Cgret REXdb_ID11315 Ty3/gypsy_CL474 (1) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-outgroup + + + + + - + - - - - - not tested not tested not tested not tested GEN_Cico1 REXdb_ID5387 Ty1/copia_CL666 (1) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - - - - - not tested TGGCAGCAGAGGATG (tRNA-Met) not tested - GEN_Cinful-1 REXdb_ID9775 Ty3/gypsy_CL475 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - - not tested not tested not tested not tested not tested not tested GEN_CoDi6.3 REXdb_ID5388 Ty1/copia_CL667 (1) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - - - - - not tested - not tested - GEN_CoDi6.4 REXdb_ID5389 Ty1/copia_CL668 (1) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - - - - - not tested - not tested - GEN_CoDi6.5 REXdb_ID5390 Ty1/copia_CL669 (1) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - - - - - not tested - not tested - GEN_CoDi6.6 REXdb_ID5391 Ty1/copia_CL670 (1) Class_I::LTR::Ty1/copia::Ty1-outgroup - + + + + - - - - - not tested not tested not tested - not tested GTTATGAGCCCAAC (1/2tRNA-Met) GEN_Copia REXdb_ID5392 Ty1/copia_CL350 (3) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - - - - - not tested - not tested GGTTATGGGCCCAG (1/2tRNA-Met) GEN_CRM REXdb_ID11992 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested GEN_CsRN1 REXdb_ID5424 Ty3/gypsy_CL476 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::non-chromo-outgroup - + + + + - - - - - not tested not tested not tested not tested not tested not tested GEN_Cyclops-2 REXdb_ID6774 Ty3/gypsy_CL477 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - not tested not tested not tested not tested GEN_Dane-1 REXdb_ID13825 Ty3/gypsy_CL478 (1) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-outgroup + + + + + - + - - - - - not tested not tested not tested not tested GEN_Del REXdb_ID13106 Ty3/gypsy_CL479 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - not tested not tested not tested not tested GEN_Diaspora REXdb_ID6771 Ty3/gypsy_CL069 (14) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - not tested not tested not tested not tested GEN_Endovir1-1 REXdb_ID4328 Ty1/copia_CL185 (5) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - not tested not tested not tested not tested GEN_Fourf REXdb_ID4690 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - not tested not tested not tested not tested GEN_G-Rhodo REXdb_ID13826 Ty3/gypsy_CL482 (1) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-outgroup + + + + + - + - - - + + not tested not tested not tested not tested GEN_Galadriel REXdb_ID12325 Ty3/gypsy_CL480 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - not tested not tested not tested not tested GEN_GalEa1 REXdb_ID5393 Ty1/copia_CL671 (1) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - - - - - not tested TGGTAGCAGAGCGTGGTT (tRNA-Met) not tested - GEN_Gimli REXdb_ID13811 Ty3/gypsy_CL152 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - not tested not tested not tested not tested GEN_Gloin REXdb_ID13813 Ty3/gypsy_CL481 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - not tested not tested not tested not tested GEN_Humnum REXdb_ID5394 Ty1/copia_CL672 (1) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - - - - - not tested - not tested GGTTATGGACCCAG (1/2tRNA-Met, 1 mismatch) GEN_Hydra1-1 REXdb_ID5395 Ty1/copia_CL673 (1) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - - - - - not tested - not tested - GEN_Hydra1-2 REXdb_ID5396 Ty1/copia_CL674 (1) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - - - - - not tested not tested not tested not tested GEN_Ifg7 REXdb_ID13810 Ty3/gypsy_CL291 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - not tested not tested not tested not tested GEN_Koala REXdb_ID463 Ty1/copia_CL675 (1) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested GEN_Koco REXdb_ID5397 Ty1/copia_CL350 (3) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - - - - - not tested - not tested GGTTATGGGCCCAG (1/2tRNA-Met) GEN_Legolas REXdb_ID13105 Ty3/gypsy_CL053 (20) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - not tested not tested not tested not tested GEN_Maggy REXdb_ID13827 Ty3/gypsy_CL483 (1) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-outgroup + + + + + - + - - - - - not tested not tested not tested not tested GEN_marY1 REXdb_ID11317 Ty3/gypsy_CL484 (1) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-outgroup + + + + + - + - - - - - not tested not tested not tested not tested GEN_Mdg1 REXdb_ID5425 Ty3/gypsy_CL268 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::non-chromo-outgroup - + + + + - - - - - not tested not tested not tested not tested not tested not tested GEN_Mdg3 REXdb_ID5426 Ty3/gypsy_CL485 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::non-chromo-outgroup + + + + + - - - - - - - not tested not tested not tested not tested GEN_Melmoth REXdb_ID464 Ty1/copia_CL513 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested GEN_Micropia REXdb_ID5427 Ty3/gypsy_CL486 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::non-chromo-outgroup - + + + + - - - - - not tested not tested not tested not tested not tested not tested GEN_Monkey REXdb_ID12326 Ty3/gypsy_CL292 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel - + + + + - + - - - not tested not tested not tested not tested not tested not tested GEN_Mtanga REXdb_ID5398 Ty1/copia_CL676 (1) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - - - - - not tested - not tested GGTTATGGGCCCAGA (1/2tRNA-Met) GEN_Ogre REXdb_ID7608 Ty3/gypsy_CL293 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - not tested not tested not tested not tested GEN_Olco1 REXdb_ID5399 Ty1/copia_CL677 (1) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - - - - - not tested TGGTAGCAGAGGATGGTT (tRNA-Met) not tested - GEN_Opie-2 REXdb_ID4329 Ty1/copia_CL361 (3) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + + - - not tested not tested not tested not tested GEN_Oryco1-1 REXdb_ID3202 Ty1/copia_CL276 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - not tested not tested not tested not tested GEN_Oryco1-2 REXdb_ID3203 Ty1/copia_CL277 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - not tested not tested not tested not tested GEN_Osser REXdb_ID3862 Ty1/copia_CL678 (1) Class_I::LTR::Ty1/copia::Osser + + + + + - - - - - - - not tested not tested not tested not tested GEN_pCal REXdb_ID5400 Ty1/copia_CL679 (1) Class_I::LTR::Ty1/copia::Ty1-outgroup - + + + + - - - - - not tested not tested not tested - not tested GATTAGAAGTCGA (1/2tRNA-Arg) GEN_Peabody REXdb_ID13103 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - not tested not tested not tested not tested GEN_Poco REXdb_ID3204 Ty1/copia_CL362 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - not tested not tested not tested not tested GEN_PyRE1G1 REXdb_ID5401 Ty1/copia_CL680 (1) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - - - - - not tested - not tested GGTTATGGGCCCAGCTTG (1/2tRNA-Met) GEN_Pyret REXdb_ID11322 Ty3/gypsy_CL487 (1) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-outgroup + + + + + - + - - - - - not tested not tested not tested not tested GEN_Reina REXdb_ID13812 Ty3/gypsy_CL294 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - not tested not tested not tested not tested GEN_Retrofit REXdb_ID465 Ty1/copia_CL080 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested GEN_Retrosat-2 REXdb_ID13104 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - not tested not tested not tested not tested GEN_RetroSor1 REXdb_ID9778 Ty3/gypsy_CL060 (18) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - not tested not tested not tested not tested GEN_RIRE2 REXdb_ID9777 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - not tested not tested not tested not tested GEN_RTvr2 REXdb_ID5195 Ty1/copia_CL681 (1) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - not tested not tested not tested not tested GEN_SIRE1-4 REXdb_ID4330 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - not tested not tested not tested not tested GEN_Skippy REXdb_ID11321 Ty3/gypsy_CL488 (1) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-outgroup + + + + + - + - - - - - not tested not tested not tested not tested GEN_Sto-4 REXdb_ID2814 Ty1/copia_CL682 (1) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - not tested not tested not tested not tested GEN_Sushi-ichi REXdb_ID11316 Ty3/gypsy_CL489 (1) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-outgroup + + + + + - + - - - - - not tested not tested not tested not tested GEN_Tat4-1 REXdb_ID9776 Ty3/gypsy_CL263 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - not tested not tested not tested not tested GEN_Tdh2 REXdb_ID5402 Ty1/copia_CL683 (1) Class_I::LTR::Ty1/copia::Ty1-outgroup - + + + + - - - - - not tested not tested not tested - not tested GATTAGAAGTCAAAC (1/2tRNA-Arg) GEN_TF1 REXdb_ID13828 Ty3/gypsy_CL490 (1) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-outgroup - + + + + - - - - - not tested not tested not tested not tested not tested not tested GEN_Tkm1 REXdb_ID5403 Ty1/copia_CL684 (1) Class_I::LTR::Ty1/copia::Ty1-outgroup - + + + + - - - - - not tested not tested not tested TGGTAGCGCC (tRNA-Met) not tested - GEN_Tma REXdb_ID13102 Ty3/gypsy_CL121 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay - + + + + - + - - - not tested not tested not tested not tested not tested not tested GEN_Tnt-1 REXdb_ID5196 Ty1/copia_CL685 (1) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - not tested not tested not tested not tested GEN_Tntom1 REXdb_ID12327 Ty3/gypsy_CL491 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel - + + + + - - - - - not tested not tested not tested not tested not tested not tested GEN_Tor2 REXdb_ID5428 Ty3/gypsy_CL492 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::non-chromo-outgroup - + + + + - - - - - not tested not tested not tested not tested not tested not tested GEN_Tork4 REXdb_ID5197 Ty1/copia_CL196 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - not tested not tested not tested not tested GEN_ToRTL1 REXdb_ID4331 Ty1/copia_CL686 (1) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - not tested not tested not tested not tested GEN_Tse1 REXdb_ID5404 Ty1/copia_CL687 (1) Class_I::LTR::Ty1/copia::Ty1-outgroup - + + + + - - - - - not tested not tested not tested TGGTAGCGCC (tRNA-Met) not tested - GEN_Tse3 REXdb_ID13829 Ty3/gypsy_CL493 (1) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-outgroup + + + + + - - - - - - - not tested not tested not tested not tested GEN_TSI-9 REXdb_ID4332 Ty1/copia_CL070 (13) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - not tested not tested not tested not tested GEN_Tto1 REXdb_ID5198 Ty1/copia_CL201 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - not tested not tested not tested not tested GEN_Ty1B REXdb_ID5405 Ty1/copia_CL202 (5) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - - - - - not tested TGGTAGCGCC (tRNA-Met) not tested - GEN_Ty2 REXdb_ID5406 Ty1/copia_CL202 (5) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - - - - - not tested TGGTAGCGCC (tRNA-Met) not tested - GEN_Ty3-1 REXdb_ID13830 Ty3/gypsy_CL295 (2) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-outgroup + + + + + - - - - - - - not tested not tested not tested not tested GEN_Ty4 REXdb_ID5407 Ty1/copia_CL514 (2) Class_I::LTR::Ty1/copia::Ty1-outgroup - + + + + - - - - - not tested not tested not tested TGGCGACCCCAGTGAGGG (tRNA-Asn) not tested - GEN_V12 REXdb_ID5199 Ty1/copia_CL688 (1) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - not tested not tested not tested not tested GEN_Vitico1-1 REXdb_ID3205 Ty1/copia_CL278 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - not tested not tested not tested not tested GEN_Woot REXdb_ID5429 Ty3/gypsy_CL494 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::non-chromo-outgroup - + + + + - - - - - not tested not tested not tested not tested not tested not tested GEN_Xanthias REXdb_ID5408 Ty1/copia_CL490 (2) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - - - - - not tested - not tested GGTTATGGGCCT (1/2tRNA-Met) GEN_Yokozuna REXdb_ID5409 Ty1/copia_CL689 (1) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - - - - - not tested - not tested CGCTTCCACTGCGC (1/4tRNA-Met) GEN_Zeco1 REXdb_ID5410 Ty1/copia_CL515 (2) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - + - - - not tested TGGTAGCAGAGGATGGTT (tRNA-Met) not tested - GEN_Zeco2 REXdb_ID5411 Ty1/copia_CL515 (2) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - - - - - not tested TGGTAGCAGAGAATGGTT (tRNA-Met) not tested - Gimli_AraT_ID40 REXdb_ID13815 Ty3/gypsy_CL152 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - not tested not tested not tested not tested GlyM_ID222 REXdb_ID13109 Ty3/gypsy_CL170 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - not tested not tested not tested not tested GlyM_ID228 REXdb_ID13816 Ty3/gypsy_CL296 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - not tested not tested not tested not tested GlyM_ID230 REXdb_ID13817 Ty3/gypsy_CL217 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - not tested not tested not tested not tested GlyM1_ID85 REXdb_ID12016 Ty3/gypsy_CL093 (10) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested GlyT_ID221 REXdb_ID13110 Ty3/gypsy_CL496 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - not tested not tested not tested not tested GlyT1_ID82 REXdb_ID12017 Ty3/gypsy_CL495 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - not tested not tested not tested not tested Gmax275_10 REXdb_ID13644 Ty3/gypsy_CL497 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTC (tRNA-Thr) - not tested Gmax275_111_rc REXdb_ID4333 Ty1/copia_CL042 (22) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Gmax275_114 REXdb_ID4334 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 - - not tested Gmax275_115_rc REXdb_ID7454 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - + - 5 TGGCGACTCCGCTGGGGA (tRNA-Arg) - not tested Gmax275_120_rc REXdb_ID11825 Ty3/gypsy_CL093 (10) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Gmax275_123 REXdb_ID7472 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - - - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Gmax275_125_rc REXdb_ID13645 Ty3/gypsy_CL498 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTGAG (tRNA-Thr) - not tested Gmax275_127 REXdb_ID4335 Ty1/copia_CL042 (22) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Gmax275_129_rc REXdb_ID4336 Ty1/copia_CL042 (22) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Gmax275_13_rc REXdb_ID6692 Ty3/gypsy_CL153 (5) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGATTT (tRNA-Asp) - not tested Gmax275_135 REXdb_ID7465 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Gmax275_136 REXdb_ID6616 Ty3/gypsy_CL069 (14) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Gmax275_137 REXdb_ID4337 Ty1/copia_CL042 (22) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Gmax275_139_rc REXdb_ID4338 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Gmax275_14 REXdb_ID4339 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Gmax275_140 REXdb_ID4340 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Gmax275_141 REXdb_ID4341 Ty1/copia_CL042 (22) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Gmax275_145 REXdb_ID4342 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Gmax275_150 REXdb_ID6622 Ty3/gypsy_CL069 (14) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Gmax275_151_rc REXdb_ID7459 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - + - 5 TGGCGACTCCACTGGGGATCG (tRNA-Arg) - not tested Gmax275_153_rc REXdb_ID6617 Ty3/gypsy_CL069 (14) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGTCGTTGCCGGGGA (tRNA-Asp) - not tested Gmax275_154 REXdb_ID4343 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Gmax275_156_rc REXdb_ID11884 Ty3/gypsy_CL103 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + not tested not tested - - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Gmax275_158_rc REXdb_ID4344 Ty1/copia_CL042 (22) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 4 - - not tested Gmax275_16 REXdb_ID466 Ty1/copia_CL098 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCCTA (tRNA-Met) - not tested Gmax275_160_rc REXdb_ID7474 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Gmax275_161 REXdb_ID7480 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - + - 5 TGGCGACTCCACT (tRNA-Arg) - not tested Gmax275_174 REXdb_ID4345 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 4 TGGTATCAGAGCG (tRNA-Met) - not tested Gmax275_175 REXdb_ID4346 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Gmax275_179 REXdb_ID4347 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Gmax275_18_rc REXdb_ID7462 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Gmax275_180 REXdb_ID7456 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Gmax275_181_rc REXdb_ID4348 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGTA (tRNA-Met) - not tested Gmax275_184_rc REXdb_ID6618 Ty3/gypsy_CL069 (14) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTTCCGGGGA (tRNA-Asp) - not tested Gmax275_186_rc REXdb_ID7455 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Gmax275_187_rc REXdb_ID4349 Ty1/copia_CL042 (22) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Gmax275_19_rc REXdb_ID13646 Ty3/gypsy_CL499 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTCCGACCTGCCT (tRNA-Tyr) - not tested Gmax275_191 REXdb_ID6627 Ty3/gypsy_CL069 (14) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCACCGTTGTCGGGGA (tRNA-Asp) - not tested Gmax275_194_rc REXdb_ID3206 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Gmax275_195_rc REXdb_ID6619 Ty3/gypsy_CL069 (14) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Gmax275_198 REXdb_ID6624 Ty3/gypsy_CL069 (14) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - not tested not tested 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Gmax275_199 REXdb_ID7476 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - - - 5 TGGCGACTCCACTGG (tRNA-Arg) - not tested Gmax275_201_rc REXdb_ID4350 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Gmax275_202_rc REXdb_ID11831 Ty3/gypsy_CL093 (10) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Gmax275_204 REXdb_ID7475 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Gmax275_206 REXdb_ID4691 Ty1/copia_CL279 (4) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - AGATTGAATCAAAT not tested Gmax275_207 REXdb_ID13647 Ty3/gypsy_CL500 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCAGAGAATA (tRNA-Ser) - not tested Gmax275_208_rc REXdb_ID11826 Ty3/gypsy_CL093 (10) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Gmax275_211 REXdb_ID13648 Ty3/gypsy_CL501 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTCCGACCTGCCAGATT (tRNA-Tyr) - not tested Gmax275_212_rc REXdb_ID4351 Ty1/copia_CL042 (22) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Gmax275_213_rc REXdb_ID4352 Ty1/copia_CL042 (22) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Gmax275_215 REXdb_ID5200 Ty1/copia_CL203 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTTACTCCAC (tRNA-Gln) - not tested Gmax275_217 REXdb_ID4353 Ty1/copia_CL042 (22) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Gmax275_218_rc REXdb_ID7489 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - + - 5 TGGCAACTCCACTAGGGA (tRNA-Pro) - not tested Gmax275_219_rc REXdb_ID4354 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Gmax275_222_rc REXdb_ID7481 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTGTTT (tRNA-?) - not tested Gmax275_223_rc REXdb_ID6620 Ty3/gypsy_CL069 (14) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGTCGTTGCCGGGGA (tRNA-Asp) - not tested Gmax275_226 REXdb_ID7477 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Gmax275_227_rc REXdb_ID7485 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - - - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Gmax275_228_rc REXdb_ID7468 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - + - 5 TGGCGACTCCACTGGGGATTG (tRNA-His) - not tested Gmax275_23_rc REXdb_ID6626 Ty3/gypsy_CL069 (14) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCATCGTTGCCGGGGA (tRNA-Undet) - not tested Gmax275_230_rc REXdb_ID7464 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - + - 5 TGGCGACTCCACTGGGGAATG (tRNA-His) - not tested Gmax275_231_rc REXdb_ID4355 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - + - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Gmax275_232 REXdb_ID11830 Ty3/gypsy_CL093 (10) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATTAGAGCA (tRNA-Met) - not tested Gmax275_238_rc REXdb_ID4356 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Gmax275_24_rc REXdb_ID7466 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Gmax275_243 REXdb_ID6623 Ty3/gypsy_CL069 (14) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Gmax275_246 REXdb_ID7469 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - + - 5 TGGCGACTCCGCTGGGGA (tRNA-Arg) - not tested Gmax275_247 REXdb_ID11833 Ty3/gypsy_CL093 (10) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Gmax275_248 REXdb_ID4357 Ty1/copia_CL042 (22) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Gmax275_250_rc REXdb_ID11828 Ty3/gypsy_CL093 (10) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Gmax275_253 REXdb_ID7467 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - - - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Gmax275_254 REXdb_ID4358 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Gmax275_257 REXdb_ID4359 Ty1/copia_CL042 (22) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Gmax275_26_rc REXdb_ID7473 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Gmax275_261 REXdb_ID4360 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Gmax275_262 REXdb_ID4361 Ty1/copia_CL042 (22) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Gmax275_263 REXdb_ID7461 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Gmax275_266 REXdb_ID4362 Ty1/copia_CL042 (22) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Gmax275_267 REXdb_ID13055 Ty3/gypsy_CL170 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Gmax275_268_rc REXdb_ID6628 Ty3/gypsy_CL069 (14) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTTCCGGGGA (tRNA-Asp) - not tested Gmax275_269_rc REXdb_ID4363 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Gmax275_27 REXdb_ID4364 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Gmax275_270_rc REXdb_ID11832 Ty3/gypsy_CL093 (10) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 4 - - not tested Gmax275_273_rc REXdb_ID4365 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Gmax275_275_rc REXdb_ID7482 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - - - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Gmax275_276 REXdb_ID4366 Ty1/copia_CL042 (22) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGTATCAGAGTCAGGTTTC (tRNA-Met) - not tested Gmax275_277_rc REXdb_ID467 Ty1/copia_CL098 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGCCT (tRNA-?) - not tested Gmax275_278_rc REXdb_ID4367 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Gmax275_281_rc REXdb_ID4368 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Gmax275_282_rc REXdb_ID4369 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Gmax275_283 REXdb_ID13649 Ty3/gypsy_CL502 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTGAG (tRNA-Thr) - not tested Gmax275_284 REXdb_ID4370 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Gmax275_287_rc REXdb_ID4371 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Gmax275_289_rc REXdb_ID6621 Ty3/gypsy_CL069 (14) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCACCGTTGCCGGGGA (tRNA-Asp) - not tested Gmax275_29_rc REXdb_ID4373 Ty1/copia_CL042 (22) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Gmax275_290 REXdb_ID13056 Ty3/gypsy_CL170 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Gmax275_291 REXdb_ID11827 Ty3/gypsy_CL093 (10) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Gmax275_295_rc REXdb_ID4372 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Gmax275_296 REXdb_ID11829 Ty3/gypsy_CL093 (10) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Gmax275_30 REXdb_ID4374 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Gmax275_300_rc REXdb_ID4375 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - + - not tested not tested 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Gmax275_303_rc REXdb_ID4376 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Gmax275_304 REXdb_ID4377 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Gmax275_307 REXdb_ID4378 Ty1/copia_CL042 (22) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Gmax275_309_rc REXdb_ID7595 Ty3/gypsy_CL297 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Gmax275_314_rc REXdb_ID5201 Ty1/copia_CL203 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Gmax275_316_rc REXdb_ID7596 Ty3/gypsy_CL297 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Gmax275_319 REXdb_ID7484 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Gmax275_320 REXdb_ID7486 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Gmax275_321_rc REXdb_ID7457 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - + - 5 TGGCGACTCCACTGGGGAA (tRNA-His) - not tested Gmax275_322_rc REXdb_ID7463 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Gmax275_325 REXdb_ID4379 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Gmax275_328_rc REXdb_ID7460 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Gmax275_33_rc REXdb_ID7491 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Gmax275_330 REXdb_ID7488 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Gmax275_331 REXdb_ID4380 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Gmax275_332 REXdb_ID4381 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATTAGAGCA (tRNA-Met) - not tested Gmax275_333 REXdb_ID3207 Ty1/copia_CL516 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCTAGAG (tRNA-?) - not tested Gmax275_335_rc REXdb_ID4382 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Gmax275_336 REXdb_ID4692 Ty1/copia_CL279 (4) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - - not tested Gmax275_337_rc REXdb_ID7479 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Gmax275_338_rc REXdb_ID5202 Ty1/copia_CL203 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTTACTCCAC (tRNA-Gln) - not tested Gmax275_339_rc REXdb_ID2815 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Gmax275_340_rc REXdb_ID7458 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Gmax275_341 REXdb_ID5203 Ty1/copia_CL203 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Gmax275_345_rc REXdb_ID4383 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Gmax275_347_rc REXdb_ID4384 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Gmax275_350 REXdb_ID4385 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Gmax275_351_rc REXdb_ID4386 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Gmax275_353_rc REXdb_ID7490 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - + - 5 TGGCGACTCCACTGGGGATTG (tRNA-His) - not tested Gmax275_356_rc REXdb_ID13650 Ty3/gypsy_CL503 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTCTCGT (tRNA-Thr) - not tested Gmax275_358 REXdb_ID2816 Ty1/copia_CL041 (22) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Gmax275_360_rc REXdb_ID4387 Ty1/copia_CL042 (22) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Gmax275_361_rc REXdb_ID5204 Ty1/copia_CL203 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 6 TGGTTACTCCAC (tRNA-Gln) - not tested Gmax275_364_rc REXdb_ID4388 Ty1/copia_CL042 (22) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Gmax275_367_rc REXdb_ID7483 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Gmax275_37 REXdb_ID7487 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - - - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Gmax275_371_rc REXdb_ID4389 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Gmax275_373_rc REXdb_ID4390 Ty1/copia_CL042 (22) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATTAGAGCT (tRNA-Met) - not tested Gmax275_375 REXdb_ID4391 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Gmax275_376_rc REXdb_ID4693 Ty1/copia_CL279 (4) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - AGATTGAATCAAAT not tested Gmax275_379_rc REXdb_ID4392 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Gmax275_381 REXdb_ID6695 Ty3/gypsy_CL153 (5) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCAGGGATT (tRNA-Asp) - not tested Gmax275_382_rc REXdb_ID11885 Ty3/gypsy_CL103 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Gmax275_383 REXdb_ID3208 Ty1/copia_CL516 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCTAGAG (tRNA-?) - not tested Gmax275_384_rc REXdb_ID2817 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Gmax275_386_rc REXdb_ID6694 Ty3/gypsy_CL153 (5) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGATTT (tRNA-Asp) - not tested Gmax275_387_rc REXdb_ID4694 Ty1/copia_CL279 (4) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - AGATTGAATCAAAT not tested Gmax275_388 REXdb_ID13651 Ty3/gypsy_CL504 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTCCGACCTGCCA (tRNA-Tyr) - not tested Gmax275_39 REXdb_ID7470 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - - - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Gmax275_392 REXdb_ID13652 Ty3/gypsy_CL505 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTCTCGTTG (tRNA-Thr) - not tested Gmax275_394_rc REXdb_ID13653 Ty3/gypsy_CL506 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTCCGACCTGCCC (tRNA-Tyr) - not tested Gmax275_395_rc REXdb_ID13654 Ty3/gypsy_CL507 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTCTCGT (tRNA-Thr) - not tested Gmax275_397 REXdb_ID13655 Ty3/gypsy_CL296 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTGAGAC (tRNA-Thr) - not tested Gmax275_398_rc REXdb_ID6693 Ty3/gypsy_CL153 (5) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGATTT (tRNA-Asp) - not tested Gmax275_42 REXdb_ID13057 Ty3/gypsy_CL170 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Gmax275_43_rc REXdb_ID13656 Ty3/gypsy_CL508 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTGAG (tRNA-Thr) - not tested Gmax275_45_rc REXdb_ID4393 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Gmax275_46_rc REXdb_ID7471 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - - - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Gmax275_54_rc REXdb_ID4394 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Gmax275_57_rc REXdb_ID4395 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Gmax275_59 REXdb_ID4396 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCGG (tRNA-Met) - not tested Gmax275_6_rc REXdb_ID13657 Ty3/gypsy_CL509 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTCCGACCTGCT (tRNA-Tyr) - not tested Gmax275_60 REXdb_ID2818 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Gmax275_63_rc REXdb_ID6625 Ty3/gypsy_CL069 (14) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Gmax275_67_rc REXdb_ID4397 Ty1/copia_CL042 (22) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Gmax275_70 REXdb_ID4398 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Gmax275_79_rc REXdb_ID2819 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Gmax275_8 REXdb_ID13658 Ty3/gypsy_CL510 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTCA (tRNA-Thr) - not tested Gmax275_83 REXdb_ID4399 Ty1/copia_CL042 (22) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Gmax275_85_rc REXdb_ID13502 Ty3/gypsy_CL217 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTCCGACCTGCCGGATTT (tRNA-Tyr) - not tested Gmax275_91_rc REXdb_ID4400 Ty1/copia_CL017 (47) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Gmax275_96_rc REXdb_ID7478 Ty3/gypsy_CL039 (38) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Graimondii221_102_rc REXdb_ID11926 Ty3/gypsy_CL218 (3) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGATT (tRNA-Met) - not tested Graimondii221_108_rc REXdb_ID13659 Ty3/gypsy_CL511 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Graimondii221_11 REXdb_ID468 Ty1/copia_CL363 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGTCG (tRNA-?) - not tested Graimondii221_112_rc REXdb_ID11964 Ty3/gypsy_CL512 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCCGAGC (tRNA-?) - not tested Graimondii221_114_rc REXdb_ID469 Ty1/copia_CL089 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Graimondii221_115_rc REXdb_ID7601 Ty3/gypsy_CL513 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCGCTGGGGA (tRNA-Arg) - not tested Graimondii221_119 REXdb_ID3209 Ty1/copia_CL364 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCTAGAG (tRNA-?) - not tested Graimondii221_122_rc REXdb_ID3210 Ty1/copia_CL517 (2) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Graimondii221_123_rc REXdb_ID5205 Ty1/copia_CL365 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCAAGGTTTTG (tRNA-Met) - not tested Graimondii221_124 REXdb_ID13660 Ty3/gypsy_CL514 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTGAG (tRNA-Thr) - not tested Graimondii221_125_rc REXdb_ID7524 Ty3/gypsy_CL066 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCTACTGGGGA (tRNA-Arg) - not tested Graimondii221_126 REXdb_ID3211 Ty1/copia_CL204 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCTAGAG (tRNA-?) - not tested Graimondii221_128_rc REXdb_ID5206 Ty1/copia_CL162 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCCGAGC (tRNA-?) - not tested Graimondii221_129_rc REXdb_ID5207 Ty1/copia_CL162 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCCGAGC (tRNA-?) - not tested Graimondii221_132_rc REXdb_ID7536 Ty3/gypsy_CL066 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGTGACTCCGCTGG (tRNA-Arg) - not tested Graimondii221_136 REXdb_ID12298 Ty3/gypsy_CL124 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCCGAGC (tRNA-?) - not tested Graimondii221_137 REXdb_ID7532 Ty3/gypsy_CL066 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGTGACTCCACTGGGGA (tRNA-His) - not tested Graimondii221_140 REXdb_ID3212 Ty1/copia_CL280 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCATGAG (tRNA-?) - not tested Graimondii221_142 REXdb_ID12301 Ty3/gypsy_CL124 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 4 TGGTATCAGAGCCAG (tRNA-Met) - not tested Graimondii221_143 REXdb_ID12299 Ty3/gypsy_CL124 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCCGAGC (tRNA-?) - not tested Graimondii221_144_rc REXdb_ID3213 Ty1/copia_CL364 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCTAGAG (tRNA-?) - not tested Graimondii221_146_rc REXdb_ID5208 Ty1/copia_CL162 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Graimondii221_148 REXdb_ID3214 Ty1/copia_CL366 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCGAGAG (tRNA-?) - not tested Graimondii221_15_rc REXdb_ID3216 Ty1/copia_CL204 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Graimondii221_152 REXdb_ID4695 Ty1/copia_CL518 (2) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - TTTAAGGTTATA not tested Graimondii221_155 REXdb_ID3215 Ty1/copia_CL204 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Graimondii221_161_rc REXdb_ID470 Ty1/copia_CL363 (3) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Graimondii221_163_rc REXdb_ID471 Ty1/copia_CL519 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTCGAT (tRNA-Met) - not tested Graimondii221_166 REXdb_ID3217 Ty1/copia_CL133 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCTGAGCT (tRNA-Val) - not tested Graimondii221_17 REXdb_ID472 Ty1/copia_CL520 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAAGT (tRNA-Leu) - not tested Graimondii221_18 REXdb_ID3218 Ty1/copia_CL364 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCTAGAG (tRNA-?) - not tested Graimondii221_181_rc REXdb_ID13031 Ty3/gypsy_CL154 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Graimondii221_186_rc REXdb_ID3219 Ty1/copia_CL280 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCATGAG (tRNA-?) - not tested Graimondii221_187_rc REXdb_ID3220 Ty1/copia_CL204 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCTAGAG (tRNA-?) - not tested Graimondii221_188_rc REXdb_ID3221 Ty1/copia_CL366 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Graimondii221_191 REXdb_ID3222 Ty1/copia_CL366 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCGAGAG (tRNA-?) - not tested Graimondii221_192_rc REXdb_ID3223 Ty1/copia_CL133 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCTGAGCT (tRNA-Val) - not tested Graimondii221_193_rc REXdb_ID7538 Ty3/gypsy_CL066 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Graimondii221_194 REXdb_ID7528 Ty3/gypsy_CL066 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTCCGCTGGGGA (tRNA-Arg) - not tested Graimondii221_198_rc REXdb_ID5209 Ty1/copia_CL162 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Graimondii221_20 REXdb_ID3224 Ty1/copia_CL517 (2) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Graimondii221_203 REXdb_ID7533 Ty3/gypsy_CL066 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 4 TGGCGACTCCACTGGGGAAT (tRNA-His) - not tested Graimondii221_204 REXdb_ID7531 Ty3/gypsy_CL066 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + - - - - - + - 5 TGGCGACTCCAG (tRNA-?) - not tested Graimondii221_208_rc REXdb_ID12303 Ty3/gypsy_CL124 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCCGAGC (tRNA-?) - not tested Graimondii221_210 REXdb_ID473 Ty1/copia_CL367 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAAC (tRNA-Met) - not tested Graimondii221_215_rc REXdb_ID6724 Ty3/gypsy_CL219 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGTCGTTAT (tRNA-?) - not tested Graimondii221_217_rc REXdb_ID3225 Ty1/copia_CL133 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Graimondii221_221_rc REXdb_ID3226 Ty1/copia_CL133 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCTGAGCT (tRNA-Val) - not tested Graimondii221_223_rc REXdb_ID474 Ty1/copia_CL368 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Graimondii221_224 REXdb_ID475 Ty1/copia_CL281 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCTAGGTT (tRNA-Met) - not tested Graimondii221_225_rc REXdb_ID12304 Ty3/gypsy_CL124 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCGGAGC (tRNA-Met) - not tested Graimondii221_227 REXdb_ID476 Ty1/copia_CL089 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGCATCAGGGC (tRNA-?) - not tested Graimondii221_228 REXdb_ID11889 Ty3/gypsy_CL155 (5) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 - - not tested Graimondii221_239_rc REXdb_ID11965 Ty3/gypsy_CL515 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM - + + + + - - + - - not tested not tested 5 - - not tested Graimondii221_241 REXdb_ID13033 Ty3/gypsy_CL154 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Graimondii221_248_rc REXdb_ID11966 Ty3/gypsy_CL516 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGTTT (tRNA-?) - not tested Graimondii221_26_rc REXdb_ID479 Ty1/copia_CL519 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTCGAT (tRNA-Met) - not tested Graimondii221_263_rc REXdb_ID477 Ty1/copia_CL369 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Graimondii221_265_rc REXdb_ID7527 Ty3/gypsy_CL066 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Graimondii221_266_rc REXdb_ID7530 Ty3/gypsy_CL066 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCGCTGGGGA (tRNA-Arg) - not tested Graimondii221_267 REXdb_ID478 Ty1/copia_CL370 (3) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGATG (tRNA-Met) - not tested Graimondii221_269 REXdb_ID7534 Ty3/gypsy_CL066 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Graimondii221_270_rc REXdb_ID6725 Ty3/gypsy_CL219 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTACTGGGGA (tRNA-Asp) - not tested Graimondii221_271 REXdb_ID11928 Ty3/gypsy_CL218 (3) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGGTGTTTTGG (tRNA-?) - not tested Graimondii221_273_rc REXdb_ID13504 Ty3/gypsy_CL298 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Graimondii221_280_rc REXdb_ID480 Ty1/copia_CL089 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGCATCAGGGC (tRNA-?) - not tested Graimondii221_281 REXdb_ID13661 Ty3/gypsy_CL517 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Graimondii221_284 REXdb_ID481 Ty1/copia_CL281 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Graimondii221_285 REXdb_ID482 Ty1/copia_CL089 (10) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGCATTAGGGC (tRNA-?) - not tested Graimondii221_286_rc REXdb_ID483 Ty1/copia_CL089 (10) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGCATCAGGGC (tRNA-?) - not tested Graimondii221_288 REXdb_ID13505 Ty3/gypsy_CL298 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Graimondii221_296 REXdb_ID5210 Ty1/copia_CL365 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCCGAGC (tRNA-?) - not tested Graimondii221_301_rc REXdb_ID484 Ty1/copia_CL369 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Graimondii221_311_rc REXdb_ID3227 Ty1/copia_CL521 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Graimondii221_318 REXdb_ID7529 Ty3/gypsy_CL066 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCACTGGGGAAT (tRNA-His) - not tested Graimondii221_321_rc REXdb_ID11927 Ty3/gypsy_CL218 (3) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 - - not tested Graimondii221_34_rc REXdb_ID486 Ty1/copia_CL089 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Graimondii221_340_rc REXdb_ID485 Ty1/copia_CL089 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGCATCAGGGC (tRNA-?) - not tested Graimondii221_341_rc REXdb_ID6726 Ty3/gypsy_CL219 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGTCGTTGCCGGGGA (tRNA-Asp) - not tested Graimondii221_346 REXdb_ID13035 Ty3/gypsy_CL154 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Graimondii221_350_rc REXdb_ID11891 Ty3/gypsy_CL155 (5) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 4 TGGTATCAGAGCTAG (tRNA-Met) - not tested Graimondii221_359_rc REXdb_ID487 Ty1/copia_CL522 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGCCT (tRNA-?) - not tested Graimondii221_36 REXdb_ID488 Ty1/copia_CL369 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Graimondii221_361_rc REXdb_ID13032 Ty3/gypsy_CL154 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Graimondii221_362 REXdb_ID11893 Ty3/gypsy_CL155 (5) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Graimondii221_366_rc REXdb_ID489 Ty1/copia_CL089 (10) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGCATCAGGGC (tRNA-?) - not tested Graimondii221_369 REXdb_ID490 Ty1/copia_CL370 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGATG (tRNA-Met) - not tested Graimondii221_37 REXdb_ID491 Ty1/copia_CL368 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATGAAGAG (tRNA-?) - not tested Graimondii221_371_rc REXdb_ID13034 Ty3/gypsy_CL154 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 - - not tested Graimondii221_374_rc REXdb_ID6757 Ty3/gypsy_CL518 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - not tested not tested 5 TGGCGCTGTTGCCGGGGA (tRNA-Asp) - not tested Graimondii221_38 REXdb_ID3228 Ty1/copia_CL204 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCTAGAG (tRNA-?) - not tested Graimondii221_384_rc REXdb_ID5211 Ty1/copia_CL162 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Graimondii221_389_rc REXdb_ID13088 Ty3/gypsy_CL519 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGTTA (tRNA-Met) - not tested Graimondii221_396 REXdb_ID12302 Ty3/gypsy_CL124 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCCGAGC (tRNA-?) - not tested Graimondii221_398 REXdb_ID7525 Ty3/gypsy_CL066 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCACTGGGGAA (tRNA-His) - not tested Graimondii221_40_rc REXdb_ID494 Ty1/copia_CL367 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACAGC (tRNA-Met) - not tested Graimondii221_400 REXdb_ID3229 Ty1/copia_CL280 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCATGAG (tRNA-?) - not tested Graimondii221_403 REXdb_ID492 Ty1/copia_CL281 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Graimondii221_407 REXdb_ID493 Ty1/copia_CL089 (10) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 6 TGGCATCAGGGC (tRNA-?) - not tested Graimondii221_409_rc REXdb_ID3230 Ty1/copia_CL521 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Graimondii221_41_rc REXdb_ID7526 Ty3/gypsy_CL066 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Graimondii221_43_rc REXdb_ID495 Ty1/copia_CL520 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGATG (tRNA-Met) - not tested Graimondii221_44 REXdb_ID4696 Ty1/copia_CL518 (2) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - TTTAAGGTTATATT not tested Graimondii221_46_rc REXdb_ID496 Ty1/copia_CL363 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGCAACAACAA (tRNA-Arg) - not tested Graimondii221_47_rc REXdb_ID5212 Ty1/copia_CL162 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCCGAGC (tRNA-?) - not tested Graimondii221_5 REXdb_ID497 Ty1/copia_CL367 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGT (tRNA-Met) - not tested Graimondii221_58 REXdb_ID3231 Ty1/copia_CL280 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCATGAG (tRNA-?) - not tested Graimondii221_6 REXdb_ID498 Ty1/copia_CL370 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Graimondii221_61 REXdb_ID7535 Ty3/gypsy_CL066 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCTGCTGGGGA (tRNA-Arg) - not tested Graimondii221_64 REXdb_ID499 Ty1/copia_CL089 (10) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Graimondii221_7_rc REXdb_ID501 Ty1/copia_CL281 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Graimondii221_73_rc REXdb_ID500 Ty1/copia_CL522 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCATGAG (tRNA-?) - not tested Graimondii221_8 REXdb_ID502 Ty1/copia_CL368 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Graimondii221_83 REXdb_ID7537 Ty3/gypsy_CL066 (15) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTCCGCTGGGGA (tRNA-Arg) - not tested Graimondii221_88 REXdb_ID11892 Ty3/gypsy_CL155 (5) Class_I::LTR::Ty3/gypsy::chromovirus::CRM - + + + + - - + - - not tested not tested 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Graimondii221_92 REXdb_ID12300 Ty3/gypsy_CL124 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 - - not tested Graimondii221_97 REXdb_ID11890 Ty3/gypsy_CL155 (5) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 4 TGGTATCAGAGCTAG (tRNA-Met) - not tested INVADER2 REXdb_ID5430 Ty3/gypsy_CL520 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::non-chromo-outgroup + + + + + - - - - - - - not tested not tested not tested not tested INVADER3 REXdb_ID5431 Ty3/gypsy_CL521 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::non-chromo-outgroup + + + + + - - - - - - - not tested not tested not tested not tested IpoB1_ID87 REXdb_ID12018 Ty3/gypsy_CL522 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + not tested not tested - - not tested not tested not tested not tested LjRE2_ID63 REXdb_ID12019 Ty3/gypsy_CL103 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested LORE1a_LotJ_ID256 REXdb_ID13818 Ty3/gypsy_CL523 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina - + + + + - + - - - not tested not tested not tested not tested not tested not tested LORE2A_LotJ_ID51 REXdb_ID13819 Ty3/gypsy_CL299 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - not tested not tested not tested not tested LORE2B_LotJ_ID52 REXdb_ID13820 Ty3/gypsy_CL299 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - not tested not tested not tested not tested LotJ_ID226 REXdb_ID13111 Ty3/gypsy_CL525 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - not tested not tested not tested not tested LotJ_ID234 REXdb_ID13821 Ty3/gypsy_CL526 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - not tested not tested not tested not tested LotJ2_ID65 REXdb_ID12020 Ty3/gypsy_CL103 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested LotJ3_ID88 REXdb_ID12021 Ty3/gypsy_CL524 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested Lusitatissimum200_100 REXdb_ID3232 Ty1/copia_CL081 (11) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Lusitatissimum200_102_rc REXdb_ID3233 Ty1/copia_CL071 (13) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATTAGAGCA (tRNA-Met) - not tested Lusitatissimum200_106_rc REXdb_ID3234 Ty1/copia_CL071 (13) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Lusitatissimum200_11_rc REXdb_ID503 Ty1/copia_CL059 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCCT (tRNA-Met) - not tested Lusitatissimum200_114_rc REXdb_ID4401 Ty1/copia_CL523 (2) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Lusitatissimum200_123_rc REXdb_ID3235 Ty1/copia_CL071 (13) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCGA (tRNA-Met) - not tested Lusitatissimum200_127 REXdb_ID3236 Ty1/copia_CL071 (13) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Lusitatissimum200_129_rc REXdb_ID504 Ty1/copia_CL371 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Lusitatissimum200_134 REXdb_ID505 Ty1/copia_CL059 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Lusitatissimum200_136_rc REXdb_ID3237 Ty1/copia_CL081 (11) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Lusitatissimum200_14 REXdb_ID3238 Ty1/copia_CL071 (13) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Lusitatissimum200_157 REXdb_ID3239 Ty1/copia_CL081 (11) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Lusitatissimum200_164_rc REXdb_ID506 Ty1/copia_CL043 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Lusitatissimum200_166 REXdb_ID507 Ty1/copia_CL043 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCGAGG (tRNA-Met) - not tested Lusitatissimum200_17_rc REXdb_ID3240 Ty1/copia_CL081 (11) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Lusitatissimum200_175 REXdb_ID508 Ty1/copia_CL043 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Lusitatissimum200_176_rc REXdb_ID509 Ty1/copia_CL043 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Lusitatissimum200_188_rc REXdb_ID510 Ty1/copia_CL059 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Lusitatissimum200_196_rc REXdb_ID511 Ty1/copia_CL043 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Lusitatissimum200_197_rc REXdb_ID512 Ty1/copia_CL059 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Lusitatissimum200_199_rc REXdb_ID5213 Ty1/copia_CL201 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGAGGCAACGC (tRNA-Gln) - not tested Lusitatissimum200_202 REXdb_ID3241 Ty1/copia_CL071 (13) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Lusitatissimum200_210 REXdb_ID513 Ty1/copia_CL043 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Lusitatissimum200_211 REXdb_ID3242 Ty1/copia_CL081 (11) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Lusitatissimum200_22_rc REXdb_ID516 Ty1/copia_CL372 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Lusitatissimum200_225_rc REXdb_ID514 Ty1/copia_CL059 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Lusitatissimum200_226_rc REXdb_ID515 Ty1/copia_CL043 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCGAGG (tRNA-Met) - not tested Lusitatissimum200_23_rc REXdb_ID4697 Ty1/copia_CL163 (6) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - - not tested Lusitatissimum200_231 REXdb_ID3243 Ty1/copia_CL071 (13) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Lusitatissimum200_234 REXdb_ID3244 Ty1/copia_CL071 (13) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Lusitatissimum200_248_rc REXdb_ID4698 Ty1/copia_CL163 (6) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTGAAGCAATT not tested Lusitatissimum200_250_rc REXdb_ID517 Ty1/copia_CL043 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCGAGG (tRNA-Met) - not tested Lusitatissimum200_254 REXdb_ID3245 Ty1/copia_CL081 (11) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Lusitatissimum200_257_rc REXdb_ID3246 Ty1/copia_CL071 (13) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Lusitatissimum200_272 REXdb_ID518 Ty1/copia_CL043 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCGAGG (tRNA-Met) - not tested Lusitatissimum200_275 REXdb_ID519 Ty1/copia_CL043 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCGAGG (tRNA-Met) - not tested Lusitatissimum200_278 REXdb_ID4402 Ty1/copia_CL523 (2) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Lusitatissimum200_281_rc REXdb_ID520 Ty1/copia_CL059 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Lusitatissimum200_283_rc REXdb_ID3247 Ty1/copia_CL071 (13) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Lusitatissimum200_292 REXdb_ID521 Ty1/copia_CL059 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Lusitatissimum200_298 REXdb_ID522 Ty1/copia_CL043 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Lusitatissimum200_299 REXdb_ID523 Ty1/copia_CL059 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Lusitatissimum200_3 REXdb_ID524 Ty1/copia_CL043 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Lusitatissimum200_301_rc REXdb_ID525 Ty1/copia_CL043 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCGAGG (tRNA-Met) - not tested Lusitatissimum200_302 REXdb_ID526 Ty1/copia_CL372 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Lusitatissimum200_309 REXdb_ID527 Ty1/copia_CL059 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Lusitatissimum200_312 REXdb_ID528 Ty1/copia_CL373 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 - - not tested Lusitatissimum200_317 REXdb_ID529 Ty1/copia_CL043 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Lusitatissimum200_320 REXdb_ID3248 Ty1/copia_CL081 (11) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGTCTG (tRNA-Met) - not tested Lusitatissimum200_330 REXdb_ID530 Ty1/copia_CL372 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Lusitatissimum200_333 REXdb_ID531 Ty1/copia_CL059 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Lusitatissimum200_335_rc REXdb_ID532 Ty1/copia_CL059 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Lusitatissimum200_341 REXdb_ID533 Ty1/copia_CL059 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Lusitatissimum200_353 REXdb_ID534 Ty1/copia_CL373 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGTCTGGTTTCG (tRNA-Met) - not tested Lusitatissimum200_357 REXdb_ID535 Ty1/copia_CL043 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Lusitatissimum200_361 REXdb_ID536 Ty1/copia_CL371 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Lusitatissimum200_367_rc REXdb_ID5214 Ty1/copia_CL201 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGAGGCAACGC (tRNA-Gln) - not tested Lusitatissimum200_369_rc REXdb_ID3249 Ty1/copia_CL081 (11) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATAAGAGCC (tRNA-Met) - not tested Lusitatissimum200_371 REXdb_ID537 Ty1/copia_CL043 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Lusitatissimum200_373 REXdb_ID4699 Ty1/copia_CL163 (6) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - - not tested Lusitatissimum200_378 REXdb_ID3250 Ty1/copia_CL071 (13) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Lusitatissimum200_380_rc REXdb_ID538 Ty1/copia_CL059 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Lusitatissimum200_4_rc REXdb_ID5215 Ty1/copia_CL201 (5) Class_I::LTR::Ty1/copia::Tork - + + + + - - - - - not tested not tested 5 TGGAGGCAACGC (tRNA-Gln) - not tested Lusitatissimum200_40_rc REXdb_ID539 Ty1/copia_CL043 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCGAGG (tRNA-Met) - not tested Lusitatissimum200_46_rc REXdb_ID3251 Ty1/copia_CL081 (11) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Lusitatissimum200_47 REXdb_ID3252 Ty1/copia_CL071 (13) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCGA (tRNA-Met) - not tested Lusitatissimum200_5 REXdb_ID4700 Ty1/copia_CL163 (6) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTAGAAGCAATT not tested Lusitatissimum200_50 REXdb_ID540 Ty1/copia_CL373 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCA (tRNA-Met) - not tested Lusitatissimum200_51_rc REXdb_ID4701 Ty1/copia_CL163 (6) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAAGCGAT not tested Lusitatissimum200_54_rc REXdb_ID541 Ty1/copia_CL043 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCGAGG (tRNA-Met) - not tested Lusitatissimum200_55 REXdb_ID542 Ty1/copia_CL043 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCGAGG (tRNA-Met) - not tested Lusitatissimum200_6 REXdb_ID3253 Ty1/copia_CL081 (11) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Lusitatissimum200_60_rc REXdb_ID543 Ty1/copia_CL371 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Lusitatissimum200_65_rc REXdb_ID544 Ty1/copia_CL043 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Lusitatissimum200_69_rc REXdb_ID545 Ty1/copia_CL043 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Lusitatissimum200_70_rc REXdb_ID5216 Ty1/copia_CL201 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 4 TGGAGGCAACGC (tRNA-Gln) - not tested Lusitatissimum200_77_rc REXdb_ID546 Ty1/copia_CL059 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Lusitatissimum200_79 REXdb_ID547 Ty1/copia_CL043 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Lusitatissimum200_80 REXdb_ID4702 Ty1/copia_CL163 (6) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAAGCGATTTC not tested Lusitatissimum200_90 REXdb_ID3254 Ty1/copia_CL081 (11) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Lusitatissimum200_92 REXdb_ID3255 Ty1/copia_CL071 (13) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 - - not tested Lusitatissimum200_93_rc REXdb_ID548 Ty1/copia_CL059 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mdomestica196_100_rc REXdb_ID549 Ty1/copia_CL036 (24) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Mdomestica196_101 REXdb_ID3256 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - not tested not tested - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mdomestica196_104_rc REXdb_ID11943 Ty3/gypsy_CL300 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTAATCAGRG (tRNA-?) - not tested Mdomestica196_106 REXdb_ID3257 Ty1/copia_CL047 (21) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Mdomestica196_107 REXdb_ID550 Ty1/copia_CL036 (24) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAARAG (tRNA-?) - not tested Mdomestica196_111_rc REXdb_ID3258 Ty1/copia_CL039 (23) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - not tested not tested - - 4 - - not tested Mdomestica196_120 REXdb_ID551 Ty1/copia_CL374 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 5 TGGTTTCATCGC (tRNA-Glu) - not tested Mdomestica196_121 REXdb_ID7597 Ty3/gypsy_CL301 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAT (tRNA-Arg) - not tested Mdomestica196_128_rc REXdb_ID3259 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Mdomestica196_136 REXdb_ID552 Ty1/copia_CL164 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCWKAGC (tRNA-?) - not tested Mdomestica196_139_rc REXdb_ID2551 Ty1/copia_CL375 (3) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 4 - - CGTTATCAGCACGCTC (tRNA-Ile) Mdomestica196_14 REXdb_ID3260 Ty1/copia_CL282 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Mdomestica196_140 REXdb_ID553 Ty1/copia_CL376 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - not tested not tested - - 5 TGGTATCAAAGA (tRNA-Met) - not tested Mdomestica196_143 REXdb_ID554 Ty1/copia_CL377 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Mdomestica196_149 REXdb_ID555 Ty1/copia_CL283 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAATTG (tRNA-?) - not tested Mdomestica196_151 REXdb_ID3261 Ty1/copia_CL205 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - not tested not tested - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Mdomestica196_153 REXdb_ID13662 Ty3/gypsy_CL527 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCGAGCT (tRNA-?) - not tested Mdomestica196_155_rc REXdb_ID556 Ty1/copia_CL524 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAATCG (tRNA-?) - not tested Mdomestica196_156_rc REXdb_ID557 Ty1/copia_CL036 (24) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Mdomestica196_157_rc REXdb_ID3262 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Mdomestica196_158_rc REXdb_ID3263 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mdomestica196_162_rc REXdb_ID558 Ty1/copia_CL378 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCATTTG (tRNA-?) - not tested Mdomestica196_164 REXdb_ID559 Ty1/copia_CL165 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTTATGGTTG (tRNA-Leu) - not tested Mdomestica196_168 REXdb_ID3264 Ty1/copia_CL282 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Mdomestica196_169_rc REXdb_ID13427 Ty3/gypsy_CL220 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 4 - - not tested Mdomestica196_172 REXdb_ID560 Ty1/copia_CL379 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCATCAT (tRNA-?) - not tested Mdomestica196_174 REXdb_ID11967 Ty3/gypsy_CL528 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGCATCCGAGC (tRNA-?) - not tested Mdomestica196_179_rc REXdb_ID13663 Ty3/gypsy_CL529 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGCCT (tRNA-?) - not tested Mdomestica196_181_rc REXdb_ID5217 Ty1/copia_CL063 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - not tested not tested - - 5 TGGTAYCAGAGC (tRNA-?) - not tested Mdomestica196_182 REXdb_ID13337 Ty3/gypsy_CL156 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCCAGAG (tRNA-?) - not tested Mdomestica196_183_rc REXdb_ID561 Ty1/copia_CL525 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - not tested not tested - - 4 - - not tested Mdomestica196_185_rc REXdb_ID562 Ty1/copia_CL380 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Mdomestica196_191_rc REXdb_ID563 Ty1/copia_CL206 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATACAGAG (tRNA-?) - not tested Mdomestica196_195_rc REXdb_ID564 Ty1/copia_CL164 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCTTCGC (tRNA-?) - not tested Mdomestica196_197 REXdb_ID13339 Ty3/gypsy_CL156 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina - + + + + - + - - - not tested not tested 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mdomestica196_20 REXdb_ID565 Ty1/copia_CL284 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 4 TGGTATCTTCGC (tRNA-?) - not tested Mdomestica196_201_rc REXdb_ID566 Ty1/copia_CL526 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 5 TGGTATCTTCGC (tRNA-?) - not tested Mdomestica196_202_rc REXdb_ID3265 Ty1/copia_CL381 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Mdomestica196_206 REXdb_ID567 Ty1/copia_CL283 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACGAG (tRNA-?) - not tested Mdomestica196_213_rc REXdb_ID3266 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Mdomestica196_214_rc REXdb_ID3267 Ty1/copia_CL282 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Mdomestica196_222 REXdb_ID13664 Ty3/gypsy_CL530 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACAGCCAG (tRNA-Met) - not tested Mdomestica196_224 REXdb_ID13089 Ty3/gypsy_CL531 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Mdomestica196_225_rc REXdb_ID13341 Ty3/gypsy_CL156 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCCAGAG (tRNA-?) - not tested Mdomestica196_23_rc REXdb_ID569 Ty1/copia_CL527 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAATCG (tRNA-?) - not tested Mdomestica196_235 REXdb_ID568 Ty1/copia_CL165 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTTTACATGG (tRNA-?) - not tested Mdomestica196_236_rc REXdb_ID13665 Ty3/gypsy_CL532 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACCCT (tRNA-?) - not tested Mdomestica196_24_rc REXdb_ID571 Ty1/copia_CL527 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAATCG (tRNA-?) - not tested Mdomestica196_240 REXdb_ID3268 Ty1/copia_CL034 (25) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Mdomestica196_243_rc REXdb_ID570 Ty1/copia_CL285 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATACGAGC (tRNA-?) - not tested Mdomestica196_247_rc REXdb_ID2820 Ty1/copia_CL382 (3) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - not tested not tested - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Mdomestica196_25 REXdb_ID12306 Ty3/gypsy_CL215 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - not tested not tested 4 TGGTATCAGAGCC (tRNA-Met) - not tested Mdomestica196_253 REXdb_ID572 Ty1/copia_CL525 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 - - not tested Mdomestica196_255_rc REXdb_ID3269 Ty1/copia_CL282 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Mdomestica196_258_rc REXdb_ID573 Ty1/copia_CL165 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - not tested not tested - - 5 TGGTTATGGTTG (tRNA-Leu) - not tested Mdomestica196_26 REXdb_ID574 Ty1/copia_CL206 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 4 - - not tested Mdomestica196_262_rc REXdb_ID3270 Ty1/copia_CL047 (21) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Mdomestica196_265 REXdb_ID13340 Ty3/gypsy_CL156 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCCAGAG (tRNA-?) - not tested Mdomestica196_266 REXdb_ID3271 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Mdomestica196_267_rc REXdb_ID575 Ty1/copia_CL528 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAATTG (tRNA-?) - not tested Mdomestica196_279 REXdb_ID576 Ty1/copia_CL206 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATACAGAG (tRNA-?) - not tested Mdomestica196_28_rc REXdb_ID579 Ty1/copia_CL377 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Mdomestica196_282_rc REXdb_ID13506 Ty3/gypsy_CL302 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Mdomestica196_285_rc REXdb_ID577 Ty1/copia_CL524 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAATCG (tRNA-?) - not tested Mdomestica196_288_rc REXdb_ID578 Ty1/copia_CL284 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 5 TGGTATCCTTCG (tRNA-?) - not tested Mdomestica196_290 REXdb_ID3272 Ty1/copia_CL039 (23) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Mdomestica196_292_rc REXdb_ID580 Ty1/copia_CL284 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCCTTCG (tRNA-?) - not tested Mdomestica196_293 REXdb_ID3273 Ty1/copia_CL529 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCCAGAG (tRNA-?) - not tested Mdomestica196_295_rc REXdb_ID581 Ty1/copia_CL165 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Mdomestica196_296_rc REXdb_ID582 Ty1/copia_CL378 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCATTCG (tRNA-?) - not tested Mdomestica196_298 REXdb_ID13364 Ty3/gypsy_CL171 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 4 TGGCTTCTGTGG (tRNA-?) - not tested Mdomestica196_299 REXdb_ID3274 Ty1/copia_CL034 (25) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - not tested not tested - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Mdomestica196_309_rc REXdb_ID5218 Ty1/copia_CL511 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Mdomestica196_312_rc REXdb_ID13430 Ty3/gypsy_CL221 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGCCT (tRNA-?) - not tested Mdomestica196_317_rc REXdb_ID583 Ty1/copia_CL036 (24) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCGAGAG (tRNA-?) - not tested Mdomestica196_319 REXdb_ID584 Ty1/copia_CL164 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCTTCAC (tRNA-?) - not tested Mdomestica196_322_rc REXdb_ID3275 Ty1/copia_CL207 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mdomestica196_323 REXdb_ID13666 Ty3/gypsy_CL533 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - not tested not tested - - 5 TGGTATCATCCA (tRNA-?) - not tested Mdomestica196_327 REXdb_ID13342 Ty3/gypsy_CL157 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGARC (tRNA-?) - not tested Mdomestica196_329 REXdb_ID2821 Ty1/copia_CL382 (3) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Mdomestica196_332_rc REXdb_ID3276 Ty1/copia_CL034 (25) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAAC (tRNA-?) - not tested Mdomestica196_333_rc REXdb_ID11942 Ty3/gypsy_CL289 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Mdomestica196_337 REXdb_ID585 Ty1/copia_CL383 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAATCG (tRNA-?) - not tested Mdomestica196_34_rc REXdb_ID590 Ty1/copia_CL531 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Mdomestica196_341_rc REXdb_ID586 Ty1/copia_CL285 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATACGAGC (tRNA-?) - not tested Mdomestica196_343 REXdb_ID587 Ty1/copia_CL383 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAATCA (tRNA-?) - not tested Mdomestica196_346_rc REXdb_ID588 Ty1/copia_CL286 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAATCG (tRNA-?) - not tested Mdomestica196_349_rc REXdb_ID589 Ty1/copia_CL530 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACAGA (tRNA-?) - not tested Mdomestica196_352_rc REXdb_ID3277 Ty1/copia_CL047 (21) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Mdomestica196_356_rc REXdb_ID13090 Ty3/gypsy_CL534 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 - - not tested Mdomestica196_357_rc REXdb_ID3278 Ty1/copia_CL034 (25) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Mdomestica196_358 REXdb_ID591 Ty1/copia_CL532 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Mdomestica196_360_rc REXdb_ID592 Ty1/copia_CL533 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - not tested not tested - - 5 TGGTATCATCGC (tRNA-?) - not tested Mdomestica196_385 REXdb_ID1809 Ty1/copia_CL053 (17) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTGGAGCTAT (tRNA-Ala) - not tested Mdomestica196_390_rc REXdb_ID593 Ty1/copia_CL384 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAATCG (tRNA-?) - not tested Mdomestica196_394_rc REXdb_ID3279 Ty1/copia_CL047 (21) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 - - not tested Mdomestica196_397 REXdb_ID594 Ty1/copia_CL036 (24) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCGAGAG (tRNA-?) - not tested Mdomestica196_398 REXdb_ID13508 Ty3/gypsy_CL303 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACCCA (tRNA-?) - not tested Mdomestica196_399_rc REXdb_ID2552 Ty1/copia_CL375 (3) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGCTCT (tRNA-Ile) Mdomestica196_400 REXdb_ID4703 Ty1/copia_CL385 (3) Class_I::LTR::Ty1/copia::TAR + + + + + - - - not tested not tested - - 5 - CTAAAGACAGAATTG not tested Mdomestica196_401_rc REXdb_ID3280 Ty1/copia_CL034 (25) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Mdomestica196_403 REXdb_ID2822 Ty1/copia_CL382 (3) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 4 TGGTATTAGAGCT (tRNA-Met) - not tested Mdomestica196_407_rc REXdb_ID3281 Ty1/copia_CL534 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 4 - - not tested Mdomestica196_427 REXdb_ID13343 Ty3/gypsy_CL157 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAACCA (tRNA-Met) - not tested Mdomestica196_43_rc REXdb_ID595 Ty1/copia_CL530 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATAACAGA (tRNA-?) - not tested Mdomestica196_431_rc REXdb_ID13510 Ty3/gypsy_CL304 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACCCA (tRNA-?) - not tested Mdomestica196_440 REXdb_ID596 Ty1/copia_CL165 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Mdomestica196_446_rc REXdb_ID9765 Ty3/gypsy_CL535 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - + + not tested not tested 5 TGGTGCTTTCATTGAGAGTTGAA (tRNA-Thr) - not tested Mdomestica196_455 REXdb_ID3282 Ty1/copia_CL034 (25) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Mdomestica196_457 REXdb_ID597 Ty1/copia_CL286 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAATCG (tRNA-?) - not tested Mdomestica196_465 REXdb_ID598 Ty1/copia_CL287 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTGCTTCCGC (tRNA-Val) - not tested Mdomestica196_468_rc REXdb_ID599 Ty1/copia_CL386 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - not tested not tested - - 5 TGGTTCTATTGCT (tRNA-Glu) - not tested Mdomestica196_47_rc REXdb_ID602 Ty1/copia_CL036 (24) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Mdomestica196_473 REXdb_ID7602 Ty3/gypsy_CL536 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre - + + + + + - - - - not tested not tested 5 TGGCACGCCCGGTGGGATT (tRNA-Arg) - not tested Mdomestica196_475 REXdb_ID3283 Ty1/copia_CL034 (25) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAAAGC (tRNA-?) - not tested Mdomestica196_477_rc REXdb_ID600 Ty1/copia_CL535 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAAAGCA (tRNA-Ile) - not tested Mdomestica196_479_rc REXdb_ID601 Ty1/copia_CL376 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Mdomestica196_491_rc REXdb_ID5219 Ty1/copia_CL387 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mdomestica196_493_rc REXdb_ID603 Ty1/copia_CL378 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCATTCG (tRNA-?) - not tested Mdomestica196_497 REXdb_ID604 Ty1/copia_CL164 (6) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCTTCGY (tRNA-?) - not tested Mdomestica196_499_rc REXdb_ID605 Ty1/copia_CL535 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCA (tRNA-Met) - not tested Mdomestica196_506 REXdb_ID606 Ty1/copia_CL286 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAATCG (tRNA-?) - not tested Mdomestica196_509 REXdb_ID607 Ty1/copia_CL528 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAATCG (tRNA-?) - not tested Mdomestica196_514 REXdb_ID3284 Ty1/copia_CL047 (21) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Mdomestica196_519 REXdb_ID3285 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCWGAGC (tRNA-?) - not tested Mdomestica196_52_rc REXdb_ID610 Ty1/copia_CL164 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCTTCGC (tRNA-?) - not tested Mdomestica196_522 REXdb_ID13365 Ty3/gypsy_CL171 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCGAGCC (tRNA-?) - not tested Mdomestica196_523_rc REXdb_ID13367 Ty3/gypsy_CL171 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - - - - - - - 5 TGGTATCAAGCC (tRNA-?) - not tested Mdomestica196_524 REXdb_ID608 Ty1/copia_CL287 (4) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCATCGC (tRNA-?) - not tested Mdomestica196_525_rc REXdb_ID609 Ty1/copia_CL287 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCTTCGC (tRNA-?) - not tested Mdomestica196_528_rc REXdb_ID13346 Ty3/gypsy_CL157 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mdomestica196_531_rc REXdb_ID6696 Ty3/gypsy_CL172 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila - + + + + - - - - - not tested not tested 5 TGGCGCCGTTGCCGGGGATT (tRNA-Asp) - not tested Mdomestica196_533_rc REXdb_ID611 Ty1/copia_CL536 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCTTCGC (tRNA-?) - not tested Mdomestica196_534 REXdb_ID612 Ty1/copia_CL386 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - not tested not tested - - 5 TGGTGATACTGC (tRNA-Val) - not tested Mdomestica196_536 REXdb_ID613 Ty1/copia_CL533 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 5 TGGTGCTTCCGC (tRNA-Val) - not tested Mdomestica196_538_rc REXdb_ID13338 Ty3/gypsy_CL156 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCCAGAG (tRNA-?) - not tested Mdomestica196_539_rc REXdb_ID3286 Ty1/copia_CL207 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Mdomestica196_54 REXdb_ID13511 Ty3/gypsy_CL304 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATTAGTCA (tRNA-?) - not tested Mdomestica196_543_rc REXdb_ID11968 Ty3/gypsy_CL537 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGACGGGTTTC (tRNA-Leu) - not tested Mdomestica196_545 REXdb_ID3287 Ty1/copia_CL034 (25) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCTGGTT (tRNA-Met) - not tested Mdomestica196_546 REXdb_ID13512 Ty3/gypsy_CL305 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAAAGCC (tRNA-Met) - not tested Mdomestica196_549 REXdb_ID3288 Ty1/copia_CL288 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTCTCAGAGC (tRNA-?) - not tested Mdomestica196_550_rc REXdb_ID3289 Ty1/copia_CL205 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Mdomestica196_555_rc REXdb_ID614 Ty1/copia_CL384 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAATCG (tRNA-?) - not tested Mdomestica196_562_rc REXdb_ID615 Ty1/copia_CL287 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCATCGC (tRNA-?) - not tested Mdomestica196_567_rc REXdb_ID3290 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mdomestica196_573 REXdb_ID3291 Ty1/copia_CL381 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - not tested not tested - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Mdomestica196_576 REXdb_ID616 Ty1/copia_CL383 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAATCG (tRNA-?) - not tested Mdomestica196_577 REXdb_ID3292 Ty1/copia_CL047 (21) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Mdomestica196_580_rc REXdb_ID617 Ty1/copia_CL036 (24) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAAGAG (tRNA-?) - not tested Mdomestica196_586 REXdb_ID618 Ty1/copia_CL285 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - not tested not tested - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mdomestica196_589_rc REXdb_ID3293 Ty1/copia_CL534 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 4 TGGTATCAGAGCCAGGTT (tRNA-Met) - not tested Mdomestica196_595_rc REXdb_ID3294 Ty1/copia_CL381 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAAGC (tRNA-Met) - not tested Mdomestica196_598 REXdb_ID3295 Ty1/copia_CL205 (5) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGCCTCAGAGC (tRNA-?) - not tested Mdomestica196_604_rc REXdb_ID3296 Ty1/copia_CL388 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mdomestica196_605_rc REXdb_ID3297 Ty1/copia_CL034 (25) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Mdomestica196_613 REXdb_ID619 Ty1/copia_CL206 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Mdomestica196_615_rc REXdb_ID2553 Ty1/copia_CL537 (2) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - - Mdomestica196_618_rc REXdb_ID13667 Ty3/gypsy_CL538 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCGAGCC (tRNA-?) - not tested Mdomestica196_619_rc REXdb_ID3298 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mdomestica196_62 REXdb_ID5220 Ty1/copia_CL387 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mdomestica196_620 REXdb_ID5221 Ty1/copia_CL389 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 4 - - not tested Mdomestica196_625_rc REXdb_ID13509 Ty3/gypsy_CL303 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACCCA (tRNA-?) - not tested Mdomestica196_627 REXdb_ID3299 Ty1/copia_CL047 (21) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Mdomestica196_628_rc REXdb_ID3300 Ty1/copia_CL047 (21) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Mdomestica196_630 REXdb_ID3301 Ty1/copia_CL034 (25) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Mdomestica196_631_rc REXdb_ID3302 Ty1/copia_CL034 (25) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Mdomestica196_632_rc REXdb_ID13668 Ty3/gypsy_CL539 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 4 TGGTATCACCCT (tRNA-?) - not tested Mdomestica196_633 REXdb_ID620 Ty1/copia_CL036 (24) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCGAGAG (tRNA-?) - not tested Mdomestica196_635 REXdb_ID621 Ty1/copia_CL526 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - not tested not tested not tested not tested 5 TGGTATCTTCGY (tRNA-?) - not tested Mdomestica196_643_rc REXdb_ID3303 Ty1/copia_CL207 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mdomestica196_65 REXdb_ID3304 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - not tested not tested 5 - - not tested Mdomestica196_656 REXdb_ID622 Ty1/copia_CL206 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATACAGAG (tRNA-?) - not tested Mdomestica196_66_rc REXdb_ID13669 Ty3/gypsy_CL540 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Mdomestica196_661_rc REXdb_ID623 Ty1/copia_CL379 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCATCGT (tRNA-?) - not tested Mdomestica196_665_rc REXdb_ID624 Ty1/copia_CL386 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTGATACTGC (tRNA-Val) - not tested Mdomestica196_668 REXdb_ID13507 Ty3/gypsy_CL302 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCTCCCT (tRNA-?) - not tested Mdomestica196_674_rc REXdb_ID625 Ty1/copia_CL283 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Mdomestica196_675_rc REXdb_ID626 Ty1/copia_CL377 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - not tested not tested not tested not tested 5 TGGTATCAAGAG (tRNA-?) - not tested Mdomestica196_680 REXdb_ID13431 Ty3/gypsy_CL221 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGCCT (tRNA-?) - not tested Mdomestica196_685 REXdb_ID5222 Ty1/copia_CL063 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - not tested not tested - - 4 TGGTATCAGAGCC (tRNA-Met) - not tested Mdomestica196_689 REXdb_ID3305 Ty1/copia_CL205 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Mdomestica196_690_rc REXdb_ID627 Ty1/copia_CL284 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCATTCG (tRNA-?) - not tested Mdomestica196_692 REXdb_ID628 Ty1/copia_CL376 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 6 - - not tested Mdomestica196_694 REXdb_ID3306 Ty1/copia_CL039 (23) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - not tested not tested 4 - - not tested Mdomestica196_697 REXdb_ID629 Ty1/copia_CL390 (3) Class_I::LTR::Ty1/copia::Ale - + + + + - - - not tested not tested not tested not tested 4 - - not tested Mdomestica196_698 REXdb_ID630 Ty1/copia_CL531 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 5 TGGTATCATCAC (tRNA-?) - not tested Mdomestica196_700_rc REXdb_ID3307 Ty1/copia_CL101 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCTAGAG (tRNA-?) - not tested Mdomestica196_701_rc REXdb_ID12307 Ty3/gypsy_CL215 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 - - not tested Mdomestica196_703_rc REXdb_ID3308 Ty1/copia_CL207 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - not tested not tested 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mdomestica196_704 REXdb_ID2554 Ty1/copia_CL375 (3) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - not tested not tested 5 - - - Mdomestica196_712 REXdb_ID3309 Ty1/copia_CL529 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCCAGAG (tRNA-?) - not tested Mdomestica196_713_rc REXdb_ID13366 Ty3/gypsy_CL171 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCGAGCC (tRNA-?) - not tested Mdomestica196_715_rc REXdb_ID13513 Ty3/gypsy_CL305 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mdomestica196_716 REXdb_ID3310 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mdomestica196_718 REXdb_ID631 Ty1/copia_CL164 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCCTCGC (tRNA-?) - not tested Mdomestica196_720 REXdb_ID13428 Ty3/gypsy_CL220 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACCCC (tRNA-?) - not tested Mdomestica196_724 REXdb_ID632 Ty1/copia_CL165 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTTATGGTTG (tRNA-Leu) - not tested Mdomestica196_728_rc REXdb_ID5223 Ty1/copia_CL387 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mdomestica196_731_rc REXdb_ID3311 Ty1/copia_CL047 (21) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 4 - - not tested Mdomestica196_732 REXdb_ID633 Ty1/copia_CL384 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAATCG (tRNA-?) - not tested Mdomestica196_733_rc REXdb_ID3312 Ty1/copia_CL205 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - not tested not tested - - 6 - - not tested Mdomestica196_734 REXdb_ID634 Ty1/copia_CL374 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 4 TGGTTTCATCGC (tRNA-Glu) - not tested Mdomestica196_735 REXdb_ID5224 Ty1/copia_CL389 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Mdomestica196_738_rc REXdb_ID635 Ty1/copia_CL286 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAATCG (tRNA-?) - not tested Mdomestica196_739 REXdb_ID13670 Ty3/gypsy_CL541 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACCCA (tRNA-?) - not tested Mdomestica196_74 REXdb_ID5225 Ty1/copia_CL389 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - not tested not tested - - 5 TGGTATCAAGAG (tRNA-?) - not tested Mdomestica196_740 REXdb_ID2823 Ty1/copia_CL538 (2) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Mdomestica196_743_rc REXdb_ID13432 Ty3/gypsy_CL221 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina - + + + + - + - - - not tested not tested 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Mdomestica196_744 REXdb_ID636 Ty1/copia_CL532 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCATCGC (tRNA-?) - not tested Mdomestica196_748_rc REXdb_ID3313 Ty1/copia_CL034 (25) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Mdomestica196_75_rc REXdb_ID2555 Ty1/copia_CL537 (2) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - not tested not tested not tested not tested 5 - - CGTTATCAGCAC (tRNA-Ile) Mdomestica196_751_rc REXdb_ID3314 Ty1/copia_CL047 (21) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Mdomestica196_752 REXdb_ID13344 Ty3/gypsy_CL157 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mdomestica196_754 REXdb_ID637 Ty1/copia_CL536 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCTTGGC (tRNA-?) - not tested Mdomestica196_756 REXdb_ID638 Ty1/copia_CL374 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 5 TGGTTTCATCGC (tRNA-Glu) - not tested Mdomestica196_761_rc REXdb_ID639 Ty1/copia_CL283 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAATCG (tRNA-?) - not tested Mdomestica196_763_rc REXdb_ID3315 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTACCAGAGT (tRNA-?) - not tested Mdomestica196_765_rc REXdb_ID7598 Ty3/gypsy_CL301 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCTAGTGGGAC (tRNA-Arg) - not tested Mdomestica196_767_rc REXdb_ID2824 Ty1/copia_CL538 (2) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Mdomestica196_772_rc REXdb_ID640 Ty1/copia_CL379 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCATCGT (tRNA-?) - not tested Mdomestica196_774_rc REXdb_ID13429 Ty3/gypsy_CL220 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACCCA (tRNA-?) - not tested Mdomestica196_79_rc REXdb_ID3316 Ty1/copia_CL034 (25) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCTGGTT (tRNA-Met) - not tested Mdomestica196_90_rc REXdb_ID13345 Ty3/gypsy_CL157 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mdomestica196_91 REXdb_ID3317 Ty1/copia_CL388 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - not tested not tested - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested MedT2_ID89 REXdb_ID12022 Ty3/gypsy_CL103 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM - + + + + - - + - - not tested not tested not tested not tested not tested not tested MEGY REXdb_ID6780 Ty3/gypsy_CL173 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - not tested not tested not tested not tested Mesculenta147_13_rc REXdb_ID12803 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATTAGAGCC (tRNA-Met) - not tested Mesculenta147_147 REXdb_ID641 Ty1/copia_CL391 (3) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Mesculenta147_150_rc REXdb_ID12806 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTCGGACCTA (tRNA-Tyr) - not tested Mesculenta147_161_rc REXdb_ID12828 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 TGGTCGGACCTA (tRNA-Tyr) - not tested Mesculenta147_163 REXdb_ID9697 Ty3/gypsy_CL139 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTTTGT (tRNA-Lys) - not tested Mesculenta147_181_rc REXdb_ID12318 Ty3/gypsy_CL542 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Mesculenta147_198_rc REXdb_ID12808 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 - - not tested Mesculenta147_2_rc REXdb_ID9702 Ty3/gypsy_CL139 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCATCTATGGGAAT (tRNA-Lys) - not tested Mesculenta147_204 REXdb_ID12823 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 - - not tested Mesculenta147_207 REXdb_ID12829 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mesculenta147_210_rc REXdb_ID12818 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mesculenta147_222_rc REXdb_ID6758 Ty3/gypsy_CL543 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 - - not tested Mesculenta147_224_rc REXdb_ID9699 Ty3/gypsy_CL139 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCTGTCTGTGGGAA (tRNA-Undet) - not tested Mesculenta147_230_rc REXdb_ID12826 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 TGGTCGGACCTA (tRNA-Tyr) - not tested Mesculenta147_238 REXdb_ID12805 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTCGGACCTA (tRNA-Tyr) - not tested Mesculenta147_24_rc REXdb_ID642 Ty1/copia_CL539 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mesculenta147_274_rc REXdb_ID12821 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTCGGACCTA (tRNA-Tyr) - not tested Mesculenta147_287 REXdb_ID12817 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mesculenta147_29_rc REXdb_ID643 Ty1/copia_CL540 (2) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Mesculenta147_291_rc REXdb_ID13671 Ty3/gypsy_CL544 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTCCGACCTGCCGGATCCG (tRNA-Tyr) - not tested Mesculenta147_323_rc REXdb_ID12825 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTCGGACCTA (tRNA-Tyr) - not tested Mesculenta147_328_rc REXdb_ID12820 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay - + + + + - + - - - not tested not tested 4 - - not tested Mesculenta147_338_rc REXdb_ID13672 Ty3/gypsy_CL545 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mesculenta147_360 REXdb_ID12812 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTCGGACCTA (tRNA-Tyr) - not tested Mesculenta147_403 REXdb_ID12815 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTCGGACCTA (tRNA-Tyr) - not tested Mesculenta147_41 REXdb_ID12810 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGAATGTCATG (tRNA-?) - not tested Mesculenta147_417 REXdb_ID644 Ty1/copia_CL391 (3) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Mesculenta147_42 REXdb_ID12807 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTCGGACCTA (tRNA-Tyr) - not tested Mesculenta147_443 REXdb_ID12804 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTCGGACCTA (tRNA-Tyr) - not tested Mesculenta147_444_rc REXdb_ID13673 Ty3/gypsy_CL546 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTCCGACCTGCCGGAT (tRNA-Asn) - not tested Mesculenta147_46_rc REXdb_ID12813 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTCGGACCTA (tRNA-Tyr) - not tested Mesculenta147_463 REXdb_ID12811 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTCGGACCTA (tRNA-Tyr) - not tested Mesculenta147_466_rc REXdb_ID12824 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mesculenta147_476 REXdb_ID12814 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGCTGCCGAAC (tRNA-?) - not tested Mesculenta147_478 REXdb_ID13674 Ty3/gypsy_CL547 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mesculenta147_484 REXdb_ID12809 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - - - - - - - 4 TGGTCGGACCTA (tRNA-Tyr) - not tested Mesculenta147_487 REXdb_ID645 Ty1/copia_CL391 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Mesculenta147_495 REXdb_ID12827 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mesculenta147_56_rc REXdb_ID9698 Ty3/gypsy_CL139 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Mesculenta147_568 REXdb_ID13675 Ty3/gypsy_CL548 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Mesculenta147_573 REXdb_ID9701 Ty3/gypsy_CL139 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Mesculenta147_577_rc REXdb_ID646 Ty1/copia_CL539 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mesculenta147_595 REXdb_ID9700 Ty3/gypsy_CL139 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Mesculenta147_63_rc REXdb_ID12822 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mesculenta147_64_rc REXdb_ID13676 Ty3/gypsy_CL549 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Mesculenta147_66 REXdb_ID12819 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTCGGACCTA (tRNA-Tyr) - not tested Mesculenta147_77 REXdb_ID647 Ty1/copia_CL540 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Mesculenta147_8_rc REXdb_ID13677 Ty3/gypsy_CL550 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - - - - - - - 5 TGGTATCAGAGCCAGCT (tRNA-Met) - not tested Mesculenta147_98_rc REXdb_ID12816 Ty3/gypsy_CL045 (27) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 TGGTATCAGATT (tRNA-Met) - not tested Mguttatus256_100 REXdb_ID9612 Ty3/gypsy_CL077 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Mguttatus256_102 REXdb_ID4403 Ty1/copia_CL090 (10) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - + - not tested not tested 4 - - not tested Mguttatus256_103_rc REXdb_ID9623 Ty3/gypsy_CL077 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Mguttatus256_104 REXdb_ID9618 Ty3/gypsy_CL077 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Mguttatus256_106_rc REXdb_ID1877 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Mguttatus256_108 REXdb_ID1878 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - not tested Mguttatus256_110 REXdb_ID1879 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCACG (tRNA-Met) - not tested Mguttatus256_111_rc REXdb_ID13075 Ty3/gypsy_CL306 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Mguttatus256_114 REXdb_ID12319 Ty3/gypsy_CL551 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAGAGCCAGGTTC (tRNA-Met) - not tested Mguttatus256_115_rc REXdb_ID4404 Ty1/copia_CL090 (10) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGCATCAGGAG (tRNA-?) - not tested Mguttatus256_116_rc REXdb_ID9625 Ty3/gypsy_CL083 (12) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Mguttatus256_118 REXdb_ID9615 Ty3/gypsy_CL077 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Mguttatus256_123 REXdb_ID4405 Ty1/copia_CL090 (10) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Mguttatus256_128 REXdb_ID3318 Ty1/copia_CL541 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCAACCACAA (tRNA-Arg) - not tested Mguttatus256_129_rc REXdb_ID9621 Ty3/gypsy_CL077 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Mguttatus256_133_rc REXdb_ID1880 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mguttatus256_135 REXdb_ID9632 Ty3/gypsy_CL083 (12) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Mguttatus256_136 REXdb_ID2825 Ty1/copia_CL072 (13) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Mguttatus256_138_rc REXdb_ID6668 Ty3/gypsy_CL140 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAAC (tRNA-Asp) - not tested Mguttatus256_140 REXdb_ID9620 Ty3/gypsy_CL077 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Mguttatus256_142_rc REXdb_ID13678 Ty3/gypsy_CL552 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCCAGAG (tRNA-?) - not tested Mguttatus256_144 REXdb_ID4406 Ty1/copia_CL542 (2) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGCATCAAGAG (tRNA-?) - not tested Mguttatus256_146 REXdb_ID9613 Ty3/gypsy_CL077 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCCGTCAGTGGG (tRNA-Lys) - not tested Mguttatus256_147 REXdb_ID1881 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mguttatus256_149_rc REXdb_ID1882 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mguttatus256_151_rc REXdb_ID1883 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mguttatus256_153 REXdb_ID1884 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - not tested Mguttatus256_156 REXdb_ID2826 Ty1/copia_CL072 (13) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Mguttatus256_16_rc REXdb_ID1887 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mguttatus256_160_rc REXdb_ID4407 Ty1/copia_CL090 (10) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGCATCAAGAG (tRNA-?) - not tested Mguttatus256_161 REXdb_ID9635 Ty3/gypsy_CL083 (12) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Mguttatus256_163 REXdb_ID9634 Ty3/gypsy_CL083 (12) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Mguttatus256_164_rc REXdb_ID1885 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mguttatus256_166_rc REXdb_ID12998 Ty3/gypsy_CL113 (8) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Mguttatus256_167_rc REXdb_ID1886 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mguttatus256_17 REXdb_ID13005 Ty3/gypsy_CL113 (8) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Mguttatus256_171 REXdb_ID1888 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mguttatus256_172 REXdb_ID9636 Ty3/gypsy_CL083 (12) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCATCTGTGGGAA (tRNA-Lys) - not tested Mguttatus256_176_rc REXdb_ID1889 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mguttatus256_18_rc REXdb_ID4408 Ty1/copia_CL090 (10) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Mguttatus256_181 REXdb_ID1890 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - not tested Mguttatus256_187_rc REXdb_ID1891 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - not tested Mguttatus256_194_rc REXdb_ID13001 Ty3/gypsy_CL113 (8) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Mguttatus256_230_rc REXdb_ID4409 Ty1/copia_CL542 (2) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGCATCAAGAG (tRNA-?) - not tested Mguttatus256_236 REXdb_ID1892 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCATAGC (tRNA-Met) - not tested Mguttatus256_237_rc REXdb_ID11969 Ty3/gypsy_CL553 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCACGAG (tRNA-?) - not tested Mguttatus256_238 REXdb_ID1893 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 4 - - not tested Mguttatus256_242 REXdb_ID1894 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - not tested Mguttatus256_243 REXdb_ID2556 Ty1/copia_CL543 (2) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 6 - - CGTTATCAGCACGAA (tRNA-Ile) Mguttatus256_245_rc REXdb_ID13002 Ty3/gypsy_CL113 (8) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Mguttatus256_247_rc REXdb_ID4410 Ty1/copia_CL090 (10) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGCATCAAGAG (tRNA-?) - not tested Mguttatus256_248 REXdb_ID1895 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - not tested Mguttatus256_258_rc REXdb_ID4411 Ty1/copia_CL090 (10) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGCATCAAGAG (tRNA-?) - not tested Mguttatus256_26 REXdb_ID9617 Ty3/gypsy_CL077 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Mguttatus256_260 REXdb_ID12999 Ty3/gypsy_CL113 (8) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Mguttatus256_263 REXdb_ID9731 Ty3/gypsy_CL222 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Mguttatus256_264 REXdb_ID5226 Ty1/copia_CL392 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Mguttatus256_265_rc REXdb_ID6670 Ty3/gypsy_CL140 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAAT (tRNA-Asp) - not tested Mguttatus256_269_rc REXdb_ID9633 Ty3/gypsy_CL083 (12) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Mguttatus256_27 REXdb_ID6669 Ty3/gypsy_CL140 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAAT (tRNA-Asp) - not tested Mguttatus256_281_rc REXdb_ID1896 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mguttatus256_293 REXdb_ID9626 Ty3/gypsy_CL083 (12) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGAAATCG (tRNA-Lys) - not tested Mguttatus256_298_rc REXdb_ID9624 Ty3/gypsy_CL077 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Mguttatus256_307_rc REXdb_ID1897 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATTAGAGCT (tRNA-Met) - not tested Mguttatus256_308_rc REXdb_ID1898 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mguttatus256_309_rc REXdb_ID6671 Ty3/gypsy_CL140 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAAT (tRNA-Asp) - not tested Mguttatus256_310 REXdb_ID11970 Ty3/gypsy_CL554 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM - + + + + - - + - - not tested not tested 5 TGGTAACCAGAG (tRNA-?) - not tested Mguttatus256_320_rc REXdb_ID1899 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mguttatus256_327_rc REXdb_ID13003 Ty3/gypsy_CL113 (8) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Mguttatus256_328_rc REXdb_ID1900 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mguttatus256_329_rc REXdb_ID1901 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - not tested Mguttatus256_334_rc REXdb_ID1902 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mguttatus256_336 REXdb_ID13514 Ty3/gypsy_CL307 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCCAGAG (tRNA-?) - not tested Mguttatus256_339_rc REXdb_ID648 Ty1/copia_CL544 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTACCAGAGC (tRNA-?) - not tested Mguttatus256_340 REXdb_ID1903 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mguttatus256_349 REXdb_ID13679 Ty3/gypsy_CL555 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCCAAAG (tRNA-Leu) - not tested Mguttatus256_351 REXdb_ID4412 Ty1/copia_CL090 (10) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 - - not tested Mguttatus256_352 REXdb_ID2557 Ty1/copia_CL543 (2) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAA (tRNA-Ile) Mguttatus256_363_rc REXdb_ID5227 Ty1/copia_CL166 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAACCT (tRNA-Met) - not tested Mguttatus256_364_rc REXdb_ID649 Ty1/copia_CL544 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTACCAGAGC (tRNA-?) - not tested Mguttatus256_37 REXdb_ID9734 Ty3/gypsy_CL223 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAT (tRNA-Lys) - not tested Mguttatus256_398 REXdb_ID650 Ty1/copia_CL393 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGATT (tRNA-Met) - not tested Mguttatus256_40 REXdb_ID6727 Ty3/gypsy_CL224 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGACC (tRNA-Asp) - not tested Mguttatus256_407_rc REXdb_ID6673 Ty3/gypsy_CL140 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAAT (tRNA-Asp) - not tested Mguttatus256_411 REXdb_ID1904 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mguttatus256_418_rc REXdb_ID1905 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mguttatus256_42 REXdb_ID9735 Ty3/gypsy_CL223 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Mguttatus256_44 REXdb_ID1906 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mguttatus256_466_rc REXdb_ID13000 Ty3/gypsy_CL113 (8) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 TGGTATCAGAGCAA (tRNA-Met) - not tested Mguttatus256_467 REXdb_ID13004 Ty3/gypsy_CL113 (8) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mguttatus256_481_rc REXdb_ID9619 Ty3/gypsy_CL077 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Mguttatus256_484 REXdb_ID1907 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mguttatus256_487_rc REXdb_ID1908 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mguttatus256_490 REXdb_ID9733 Ty3/gypsy_CL222 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTG (tRNA-?) - not tested Mguttatus256_491_rc REXdb_ID9627 Ty3/gypsy_CL083 (12) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Mguttatus256_492_rc REXdb_ID1909 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Mguttatus256_494_rc REXdb_ID6672 Ty3/gypsy_CL140 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAAT (tRNA-Asp) - not tested Mguttatus256_497_rc REXdb_ID1910 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mguttatus256_502_rc REXdb_ID4413 Ty1/copia_CL090 (10) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGCATCAAGAG (tRNA-?) - not tested Mguttatus256_513_rc REXdb_ID11971 Ty3/gypsy_CL556 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTAACCAGAG (tRNA-?) - not tested Mguttatus256_520 REXdb_ID5228 Ty1/copia_CL392 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Mguttatus256_521 REXdb_ID2827 Ty1/copia_CL072 (13) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGTCAGGATTT (tRNA-Ile) - not tested Mguttatus256_532 REXdb_ID9736 Ty3/gypsy_CL223 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Mguttatus256_539 REXdb_ID4414 Ty1/copia_CL090 (10) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGCATCAAGAG (tRNA-?) - not tested Mguttatus256_541_rc REXdb_ID9629 Ty3/gypsy_CL083 (12) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Mguttatus256_544 REXdb_ID9628 Ty3/gypsy_CL083 (12) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Mguttatus256_550_rc REXdb_ID9732 Ty3/gypsy_CL222 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Mguttatus256_554 REXdb_ID5229 Ty1/copia_CL392 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Mguttatus256_556_rc REXdb_ID9616 Ty3/gypsy_CL077 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Mguttatus256_558 REXdb_ID651 Ty1/copia_CL393 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTACCAGATT (tRNA-?) - not tested Mguttatus256_559 REXdb_ID652 Ty1/copia_CL393 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGTTT (tRNA-?) - not tested Mguttatus256_56_rc REXdb_ID13091 Ty3/gypsy_CL557 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGGGAGGTTT (tRNA-Met) - not tested Mguttatus256_564_rc REXdb_ID9630 Ty3/gypsy_CL083 (12) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAAT (tRNA-Lys) - not tested Mguttatus256_571_rc REXdb_ID9614 Ty3/gypsy_CL077 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Mguttatus256_58 REXdb_ID2828 Ty1/copia_CL072 (13) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Mguttatus256_59_rc REXdb_ID6728 Ty3/gypsy_CL224 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGACC (tRNA-Asp) - not tested Mguttatus256_6 REXdb_ID13515 Ty3/gypsy_CL307 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCTAGAG (tRNA-?) - not tested Mguttatus256_75_rc REXdb_ID1911 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mguttatus256_78 REXdb_ID1912 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mguttatus256_79_rc REXdb_ID1913 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 - - not tested Mguttatus256_8 REXdb_ID9766 Ty3/gypsy_CL558 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Mguttatus256_87_rc REXdb_ID9631 Ty3/gypsy_CL083 (12) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Mguttatus256_88 REXdb_ID6729 Ty3/gypsy_CL224 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGACC (tRNA-Asp) - not tested Mguttatus256_92 REXdb_ID13076 Ty3/gypsy_CL306 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 - - not tested Mguttatus256_93 REXdb_ID9622 Ty3/gypsy_CL077 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Mguttatus256_96 REXdb_ID1914 Ty1/copia_CL020 (38) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 4 TGGTATCAGAGCCACG (tRNA-Met) - not tested Mguttatus256_97 REXdb_ID11631 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTTTCAAAGG (tRNA-Leu) - not tested Mguttatus256_99 REXdb_ID3319 Ty1/copia_CL541 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCAACCACAA (tRNA-Arg) - not tested Mtruncatula285_10 REXdb_ID5230 Ty1/copia_CL065 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCGCCCACCGTGGGGC (tRNA-Lys) - not tested Mtruncatula285_101 REXdb_ID3320 Ty1/copia_CL394 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Mtruncatula285_102 REXdb_ID4415 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_103 REXdb_ID4416 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_104_rc REXdb_ID3321 Ty1/copia_CL545 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGGAG (tRNA-?) - not tested Mtruncatula285_108 REXdb_ID4417 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_111 REXdb_ID7263 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_112 REXdb_ID7354 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 4 - - not tested Mtruncatula285_113_rc REXdb_ID7283 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_115_rc REXdb_ID7275 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_117_rc REXdb_ID653 Ty1/copia_CL546 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Mtruncatula285_12 REXdb_ID654 Ty1/copia_CL546 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Mtruncatula285_122_rc REXdb_ID12655 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_124 REXdb_ID6730 Ty3/gypsy_CL173 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTGCCGGGGA (tRNA-Asp) - not tested Mtruncatula285_127_rc REXdb_ID5231 Ty1/copia_CL065 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCGCCCACCGTGGGGC (tRNA-Lys) - not tested Mtruncatula285_128_rc REXdb_ID7292 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_130_rc REXdb_ID7368 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_132_rc REXdb_ID5232 Ty1/copia_CL065 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCGCCCACCGTGGGGC (tRNA-Lys) - not tested Mtruncatula285_133 REXdb_ID655 Ty1/copia_CL134 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_134 REXdb_ID12684 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_135_rc REXdb_ID7284 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_136_rc REXdb_ID7367 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_137_rc REXdb_ID7376 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGATC (tRNA-Arg) - not tested Mtruncatula285_139_rc REXdb_ID12706 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay - + + + + - + - - - not tested not tested 5 TGGTATCAGATCCA (tRNA-Met) - not tested Mtruncatula285_144 REXdb_ID7383 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGATC (tRNA-Arg) - not tested Mtruncatula285_149_rc REXdb_ID12677 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_15_rc REXdb_ID13518 Ty3/gypsy_CL309 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTCTCGT (tRNA-Thr) - not tested Mtruncatula285_150 REXdb_ID4418 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_151_rc REXdb_ID12685 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 TGGTATCAGAGCA (tRNA-Met) GTATCAGAGCA not tested Mtruncatula285_157 REXdb_ID13516 Ty3/gypsy_CL308 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAAA (tRNA-Met) - not tested Mtruncatula285_16_rc REXdb_ID11929 Ty3/gypsy_CL225 (3) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Mtruncatula285_162_rc REXdb_ID656 Ty1/copia_CL690 (1) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCTAGAG (tRNA-?) - not tested Mtruncatula285_165_rc REXdb_ID4419 Ty1/copia_CL048 (20) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTGGTT (tRNA-Met) - not tested Mtruncatula285_167_rc REXdb_ID7358 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_173_rc REXdb_ID13503 Ty3/gypsy_CL217 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTCCGACCTACCGGAT (tRNA-Tyr) - not tested Mtruncatula285_174 REXdb_ID4420 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_175_rc REXdb_ID4421 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_176_rc REXdb_ID657 Ty1/copia_CL289 (4) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 4 TGGCATCAGAGC (tRNA-Met) - not tested Mtruncatula285_182 REXdb_ID7315 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_183 REXdb_ID7266 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_186_rc REXdb_ID7391 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_187 REXdb_ID4422 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Mtruncatula285_189_rc REXdb_ID13680 Ty3/gypsy_CL559 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTG (tRNA-Thr) - not tested Mtruncatula285_19_rc REXdb_ID7369 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_197 REXdb_ID3322 Ty1/copia_CL290 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCAAGAG (tRNA-?) - not tested Mtruncatula285_198 REXdb_ID7343 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_199 REXdb_ID7293 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_2_rc REXdb_ID661 Ty1/copia_CL289 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_20_rc REXdb_ID6733 Ty3/gypsy_CL226 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTGCCGGGGA (tRNA-Asp) - not tested Mtruncatula285_200_rc REXdb_ID7276 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_202 REXdb_ID7299 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_204 REXdb_ID7345 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_206 REXdb_ID7386 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGATC (tRNA-Arg) - not tested Mtruncatula285_208 REXdb_ID4704 Ty1/copia_CL102 (9) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - TTTAAGACGTTTCG not tested Mtruncatula285_209_rc REXdb_ID3323 Ty1/copia_CL208 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_21_rc REXdb_ID6732 Ty3/gypsy_CL173 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTGCC (tRNA-Asp) - not tested Mtruncatula285_210_rc REXdb_ID4423 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_214 REXdb_ID4705 Ty1/copia_CL102 (9) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - TTTAAGACGTTTCG not tested Mtruncatula285_216 REXdb_ID13681 Ty3/gypsy_CL560 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTA (tRNA-Thr) - not tested Mtruncatula285_218_rc REXdb_ID9747 Ty3/gypsy_CL310 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTAG (tRNA-Lys) - not tested Mtruncatula285_220 REXdb_ID658 Ty1/copia_CL547 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 6 - - not tested Mtruncatula285_222_rc REXdb_ID4424 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATTAGAGT (tRNA-?) - not tested Mtruncatula285_225 REXdb_ID4425 Ty1/copia_CL048 (20) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mtruncatula285_227_rc REXdb_ID13682 Ty3/gypsy_CL561 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - - - - - - - 5 TGGTGCTTTCATTT (tRNA-Thr) - not tested Mtruncatula285_232_rc REXdb_ID4706 Ty1/copia_CL135 (7) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTTAGGTTCGATT not tested Mtruncatula285_233_rc REXdb_ID7346 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_235 REXdb_ID7294 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_240 REXdb_ID7359 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_241_rc REXdb_ID4426 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_242_rc REXdb_ID7356 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_243 REXdb_ID7295 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_244 REXdb_ID659 Ty1/copia_CL098 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGCCT (tRNA-?) - not tested Mtruncatula285_245_rc REXdb_ID11930 Ty3/gypsy_CL225 (3) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Mtruncatula285_246 REXdb_ID12676 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_247 REXdb_ID7334 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_249_rc REXdb_ID7264 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_25_rc REXdb_ID6745 Ty3/gypsy_CL227 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTGCCGGGGA (tRNA-Asp) - not tested Mtruncatula285_251_rc REXdb_ID5233 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Mtruncatula285_253 REXdb_ID4427 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_255_rc REXdb_ID6734 Ty3/gypsy_CL226 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTGCCGGGGA (tRNA-Asp) - not tested Mtruncatula285_256_rc REXdb_ID7378 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_258 REXdb_ID4428 Ty1/copia_CL048 (20) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Mtruncatula285_260_rc REXdb_ID7267 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_261 REXdb_ID7387 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_263_rc REXdb_ID7398 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_265 REXdb_ID7328 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_266 REXdb_ID12705 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Mtruncatula285_267_rc REXdb_ID4707 Ty1/copia_CL135 (7) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTTAGGTTCGATT not tested Mtruncatula285_268_rc REXdb_ID5234 Ty1/copia_CL065 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCGCCCACCGTGGGGC (tRNA-Lys) - not tested Mtruncatula285_271_rc REXdb_ID4429 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_275 REXdb_ID4430 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATAAGAGC (tRNA-Met) - not tested Mtruncatula285_277 REXdb_ID4431 Ty1/copia_CL048 (20) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Mtruncatula285_279_rc REXdb_ID13520 Ty3/gypsy_CL311 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTC (tRNA-Thr) - not tested Mtruncatula285_281 REXdb_ID4432 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_282_rc REXdb_ID12659 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_29_rc REXdb_ID3324 Ty1/copia_CL548 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCTAGAG (tRNA-?) - not tested Mtruncatula285_291 REXdb_ID12688 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_294 REXdb_ID7335 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_295 REXdb_ID4708 Ty1/copia_CL135 (7) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTTAGGTTCGATT not tested Mtruncatula285_296 REXdb_ID7589 Ty3/gypsy_CL228 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Mtruncatula285_298_rc REXdb_ID12671 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_299 REXdb_ID660 Ty1/copia_CL289 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAAAGCC (tRNA-Met) - not tested Mtruncatula285_3_rc REXdb_ID4438 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_30 REXdb_ID13368 Ty3/gypsy_CL174 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTG (tRNA-Thr) - not tested Mtruncatula285_300_rc REXdb_ID7347 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_302_rc REXdb_ID7392 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_306_rc REXdb_ID4433 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - + - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_308_rc REXdb_ID11886 Ty3/gypsy_CL103 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM - + + + + - - + - - not tested not tested 4 - - not tested Mtruncatula285_31 REXdb_ID12701 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_313_rc REXdb_ID13683 Ty3/gypsy_CL562 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTCTCGTTG (tRNA-Thr) - not tested Mtruncatula285_314_rc REXdb_ID12689 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_315_rc REXdb_ID11888 Ty3/gypsy_CL103 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Mtruncatula285_320 REXdb_ID3325 Ty1/copia_CL151 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_324 REXdb_ID12672 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_325 REXdb_ID11887 Ty3/gypsy_CL103 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Mtruncatula285_326 REXdb_ID12683 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATTAGAGCA (tRNA-Met) - not tested Mtruncatula285_328_rc REXdb_ID6731 Ty3/gypsy_CL173 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTGCCGGGGA (tRNA-Asp) - not tested Mtruncatula285_329 REXdb_ID12662 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_335 REXdb_ID7379 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 - - not tested Mtruncatula285_336 REXdb_ID4709 Ty1/copia_CL102 (9) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - TTTAAGACGTTTCG not tested Mtruncatula285_337 REXdb_ID7400 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_340 REXdb_ID9748 Ty3/gypsy_CL310 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Mtruncatula285_341_rc REXdb_ID13522 Ty3/gypsy_CL312 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - - - - - - - 5 TGGTGCTTTCATTA (tRNA-Thr) - not tested Mtruncatula285_342_rc REXdb_ID12656 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_343 REXdb_ID12703 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_348_rc REXdb_ID7277 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_349 REXdb_ID7300 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_350 REXdb_ID662 Ty1/copia_CL098 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGAATCAGAAT (tRNA-?) - not tested Mtruncatula285_354_rc REXdb_ID4434 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_358 REXdb_ID4710 Ty1/copia_CL102 (9) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - TTTAAGACGTTTCG not tested Mtruncatula285_359 REXdb_ID7371 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGG (tRNA-Arg) - not tested Mtruncatula285_360_rc REXdb_ID7316 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_361 REXdb_ID4435 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Mtruncatula285_363 REXdb_ID7317 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 4 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_367 REXdb_ID7380 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_369 REXdb_ID3326 Ty1/copia_CL395 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_37 REXdb_ID13684 Ty3/gypsy_CL563 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTCTCGT (tRNA-Thr) - not tested Mtruncatula285_370 REXdb_ID7268 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_371_rc REXdb_ID4436 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_376_rc REXdb_ID3327 Ty1/copia_CL549 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Mtruncatula285_381 REXdb_ID7329 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_382_rc REXdb_ID7330 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_383 REXdb_ID4437 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_386_rc REXdb_ID7355 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_387_rc REXdb_ID7272 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_389 REXdb_ID4711 Ty1/copia_CL135 (7) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTTAGGTTCGATT not tested Mtruncatula285_39 REXdb_ID663 Ty1/copia_CL291 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Mtruncatula285_390_rc REXdb_ID664 Ty1/copia_CL292 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_392_rc REXdb_ID7301 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_394 REXdb_ID7302 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_395_rc REXdb_ID5235 Ty1/copia_CL065 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCGCCCACCGTGGGGC (tRNA-Lys) - not tested Mtruncatula285_397 REXdb_ID7352 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_401 REXdb_ID3328 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mtruncatula285_406_rc REXdb_ID4439 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_408_rc REXdb_ID4440 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_409_rc REXdb_ID4441 Ty1/copia_CL048 (20) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_411_rc REXdb_ID4442 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_413 REXdb_ID5236 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_414 REXdb_ID3329 Ty1/copia_CL545 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGGAG (tRNA-?) - not tested Mtruncatula285_418 REXdb_ID7375 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_421 REXdb_ID7331 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_423_rc REXdb_ID665 Ty1/copia_CL051 (18) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_424_rc REXdb_ID666 Ty1/copia_CL291 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACGAT (tRNA-?) - not tested Mtruncatula285_425_rc REXdb_ID12669 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_426 REXdb_ID7348 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_427 REXdb_ID4443 Ty1/copia_CL048 (20) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mtruncatula285_429 REXdb_ID667 Ty1/copia_CL292 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_43_rc REXdb_ID13685 Ty3/gypsy_CL564 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTCCGACCTGCCGGAT (tRNA-Asn) - not tested Mtruncatula285_430 REXdb_ID12680 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_431_rc REXdb_ID3330 Ty1/copia_CL290 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCTAGAG (tRNA-?) - not tested Mtruncatula285_433_rc REXdb_ID13523 Ty3/gypsy_CL312 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - - - - - - - 5 TGGTGCTTTCATTA (tRNA-Thr) - not tested Mtruncatula285_435 REXdb_ID4444 Ty1/copia_CL048 (20) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 4 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_436_rc REXdb_ID4445 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_438 REXdb_ID3331 Ty1/copia_CL293 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_44 REXdb_ID3332 Ty1/copia_CL293 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 - - not tested Mtruncatula285_440 REXdb_ID668 Ty1/copia_CL068 (13) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACAAG (tRNA-?) - not tested Mtruncatula285_441_rc REXdb_ID7395 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_442 REXdb_ID12687 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 - - not tested Mtruncatula285_444 REXdb_ID3333 Ty1/copia_CL550 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATACAGAG (tRNA-?) - not tested Mtruncatula285_446 REXdb_ID7273 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_449 REXdb_ID7278 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_45_rc REXdb_ID669 Ty1/copia_CL551 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCATTCT (tRNA-?) - not tested Mtruncatula285_451 REXdb_ID4446 Ty1/copia_CL048 (20) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Mtruncatula285_455 REXdb_ID12668 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCCGAGC (tRNA-?) - not tested Mtruncatula285_457_rc REXdb_ID12660 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_459 REXdb_ID4712 Ty1/copia_CL102 (9) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - TTTAAGACGTTTCG not tested Mtruncatula285_460 REXdb_ID5237 Ty1/copia_CL065 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCGCCCACTGTGGGGC (tRNA-Lys) - not tested Mtruncatula285_461 REXdb_ID13519 Ty3/gypsy_CL309 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTCTCGT (tRNA-Thr) - not tested Mtruncatula285_463 REXdb_ID4447 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_467 REXdb_ID11972 Ty3/gypsy_CL565 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_468 REXdb_ID13686 Ty3/gypsy_CL566 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCAT (tRNA-Thr) - not tested Mtruncatula285_469_rc REXdb_ID12661 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_470 REXdb_ID670 Ty1/copia_CL292 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_471 REXdb_ID7279 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_472_rc REXdb_ID12700 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATTAGAGCA (tRNA-Met) - not tested Mtruncatula285_473 REXdb_ID5238 Ty1/copia_CL552 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_474 REXdb_ID6746 Ty3/gypsy_CL227 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTGCCGGGGA (tRNA-Asp) - not tested Mtruncatula285_475_rc REXdb_ID13524 Ty3/gypsy_CL313 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCAT (tRNA-Thr) - not tested Mtruncatula285_477 REXdb_ID7362 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + - - - - - - - 5 - - not tested Mtruncatula285_478_rc REXdb_ID7382 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_479_rc REXdb_ID7357 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTCCACTGGGGATT (tRNA-His) - not tested Mtruncatula285_480 REXdb_ID7365 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_482 REXdb_ID5239 Ty1/copia_CL065 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCGCCCACCGTGGGGT (tRNA-Lys) - not tested Mtruncatula285_484 REXdb_ID13092 Ty3/gypsy_CL567 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_485_rc REXdb_ID4448 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Mtruncatula285_486_rc REXdb_ID4449 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_489_rc REXdb_ID3334 Ty1/copia_CL553 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATACAGAG (tRNA-?) - not tested Mtruncatula285_491_rc REXdb_ID4450 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Mtruncatula285_492 REXdb_ID2829 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Mtruncatula285_494_rc REXdb_ID7318 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre - + + + + + - - - - not tested not tested 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_495 REXdb_ID4451 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_499 REXdb_ID4713 Ty1/copia_CL102 (9) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - TTTAAGACGTTTCG not tested Mtruncatula285_5 REXdb_ID3335 Ty1/copia_CL553 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATACAGAG (tRNA-?) - not tested Mtruncatula285_50 REXdb_ID2558 Ty1/copia_CL396 (3) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGCTCTAA (tRNA-Ile) Mtruncatula285_501 REXdb_ID7280 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_502_rc REXdb_ID4452 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 4 TGGTATCAGAGCCTG (tRNA-Met) - not tested Mtruncatula285_503_rc REXdb_ID7399 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_508_rc REXdb_ID12664 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_509 REXdb_ID7340 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_510_rc REXdb_ID7353 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_511 REXdb_ID13369 Ty3/gypsy_CL174 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCACCCACAA (tRNA-Lys) - not tested Mtruncatula285_513 REXdb_ID4453 Ty1/copia_CL048 (20) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mtruncatula285_514_rc REXdb_ID3336 Ty1/copia_CL395 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_516_rc REXdb_ID4454 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_518_rc REXdb_ID3337 Ty1/copia_CL208 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_519 REXdb_ID671 Ty1/copia_CL547 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 6 - - not tested Mtruncatula285_52 REXdb_ID3338 Ty1/copia_CL548 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCTAGAG (tRNA-?) - not tested Mtruncatula285_520_rc REXdb_ID5240 Ty1/copia_CL552 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_521 REXdb_ID12691 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_523 REXdb_ID7319 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_524 REXdb_ID4455 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_525_rc REXdb_ID5241 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_526_rc REXdb_ID7332 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_527 REXdb_ID13521 Ty3/gypsy_CL311 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTC (tRNA-Thr) - not tested Mtruncatula285_528_rc REXdb_ID7320 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_530_rc REXdb_ID4714 Ty1/copia_CL135 (7) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTTAGGTTCGATT not tested Mtruncatula285_531_rc REXdb_ID4456 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_533_rc REXdb_ID7285 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_535 REXdb_ID672 Ty1/copia_CL068 (13) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCACAAG (tRNA-?) - not tested Mtruncatula285_537 REXdb_ID1915 Ty1/copia_CL554 (2) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Mtruncatula285_539 REXdb_ID7303 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_540_rc REXdb_ID7321 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_541 REXdb_ID5242 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Mtruncatula285_542 REXdb_ID2559 Ty1/copia_CL396 (3) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGCTCTAA (tRNA-Ile) Mtruncatula285_545 REXdb_ID3339 Ty1/copia_CL208 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_546 REXdb_ID673 Ty1/copia_CL051 (18) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCATAGAG (tRNA-Met) - not tested Mtruncatula285_548_rc REXdb_ID5243 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Mtruncatula285_551_rc REXdb_ID4715 Ty1/copia_CL102 (9) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - TTTAAGACGTTTCG not tested Mtruncatula285_552_rc REXdb_ID4457 Ty1/copia_CL048 (20) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mtruncatula285_553 REXdb_ID7341 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_554 REXdb_ID4458 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_556 REXdb_ID674 Ty1/copia_CL098 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGCCT (tRNA-?) - not tested Mtruncatula285_557_rc REXdb_ID3340 Ty1/copia_CL550 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATACAGAG (tRNA-?) - not tested Mtruncatula285_558_rc REXdb_ID7397 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_559_rc REXdb_ID675 Ty1/copia_CL209 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGTTG (tRNA-?) - not tested Mtruncatula285_561_rc REXdb_ID4459 Ty1/copia_CL048 (20) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_562_rc REXdb_ID4460 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_564 REXdb_ID7322 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCATTGGG (tRNA-Cys) - not tested Mtruncatula285_565_rc REXdb_ID7384 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_566 REXdb_ID7296 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_567_rc REXdb_ID4461 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_568_rc REXdb_ID7393 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_569 REXdb_ID4462 Ty1/copia_CL048 (20) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_57 REXdb_ID12666 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_570 REXdb_ID7274 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_571 REXdb_ID7310 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_572 REXdb_ID4463 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_573_rc REXdb_ID3341 Ty1/copia_CL290 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCAAGAG (tRNA-?) - not tested Mtruncatula285_576_rc REXdb_ID7269 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_577 REXdb_ID13687 Ty3/gypsy_CL568 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - - - - - - - 5 TGGTGCTTTCATTA (tRNA-Thr) - not tested Mtruncatula285_578 REXdb_ID7286 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_579 REXdb_ID4464 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_581 REXdb_ID4716 Ty1/copia_CL135 (7) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTTAGGTTCGATT not tested Mtruncatula285_585 REXdb_ID7351 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_588_rc REXdb_ID7396 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + + + 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_589 REXdb_ID7287 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_59 REXdb_ID4465 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_592_rc REXdb_ID3342 Ty1/copia_CL208 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_594_rc REXdb_ID7297 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_596_rc REXdb_ID4466 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 6 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_597 REXdb_ID12692 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_598 REXdb_ID12670 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_599_rc REXdb_ID4467 Ty1/copia_CL048 (20) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_6_rc REXdb_ID7373 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCCT (tRNA-?) - not tested Mtruncatula285_60 REXdb_ID4468 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_601_rc REXdb_ID7323 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_603_rc REXdb_ID7304 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_604_rc REXdb_ID7372 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_605_rc REXdb_ID12657 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_607 REXdb_ID12694 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_609_rc REXdb_ID4469 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_610 REXdb_ID4470 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_611 REXdb_ID4471 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_612 REXdb_ID3343 Ty1/copia_CL293 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_613 REXdb_ID7394 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_617_rc REXdb_ID7311 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_618_rc REXdb_ID7366 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_619 REXdb_ID4472 Ty1/copia_CL048 (20) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_621_rc REXdb_ID2830 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Mtruncatula285_623_rc REXdb_ID12665 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_624 REXdb_ID5244 Ty1/copia_CL166 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_625_rc REXdb_ID12698 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_629 REXdb_ID4473 Ty1/copia_CL048 (20) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCAGCT (tRNA-Met) - not tested Mtruncatula285_63 REXdb_ID4717 Ty1/copia_CL102 (9) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - TTTAAGACGTTTCG not tested Mtruncatula285_637_rc REXdb_ID12681 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_64_rc REXdb_ID12693 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_640_rc REXdb_ID12696 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_641_rc REXdb_ID12702 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_643 REXdb_ID4474 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_645 REXdb_ID4475 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_646_rc REXdb_ID4476 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - + - not tested not tested 6 - - not tested Mtruncatula285_648 REXdb_ID4477 Ty1/copia_CL048 (20) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Mtruncatula285_649 REXdb_ID7288 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_65 REXdb_ID2560 Ty1/copia_CL396 (3) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGCTCTAA (tRNA-Ile) Mtruncatula285_650 REXdb_ID4718 Ty1/copia_CL102 (9) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - - not tested Mtruncatula285_654 REXdb_ID7364 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 - - not tested Mtruncatula285_656_rc REXdb_ID12699 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 - - not tested Mtruncatula285_660 REXdb_ID7270 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_666 REXdb_ID13525 Ty3/gypsy_CL313 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCAT (tRNA-Thr) - not tested Mtruncatula285_667_rc REXdb_ID4478 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Mtruncatula285_668_rc REXdb_ID3344 Ty1/copia_CL395 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_670_rc REXdb_ID5245 Ty1/copia_CL065 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCGCCCACCGTGGGGC (tRNA-Lys) - not tested Mtruncatula285_671_rc REXdb_ID12667 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 - - not tested Mtruncatula285_675 REXdb_ID7265 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_678 REXdb_ID12695 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_682 REXdb_ID7271 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_683 REXdb_ID7336 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_684_rc REXdb_ID4479 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_685_rc REXdb_ID676 Ty1/copia_CL209 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGTTG (tRNA-?) - not tested Mtruncatula285_69_rc REXdb_ID7590 Ty3/gypsy_CL228 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Mtruncatula285_690 REXdb_ID4480 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_691 REXdb_ID5246 Ty1/copia_CL065 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCGCCCACCGTGGGGC (tRNA-Lys) - not tested Mtruncatula285_692 REXdb_ID7324 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTTCA (tRNA-?) - not tested Mtruncatula285_693 REXdb_ID7385 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_695_rc REXdb_ID7349 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_698_rc REXdb_ID7325 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_699 REXdb_ID7305 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_7_rc REXdb_ID4492 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Mtruncatula285_700 REXdb_ID7312 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_701 REXdb_ID7350 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_704 REXdb_ID4481 Ty1/copia_CL048 (20) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Mtruncatula285_705_rc REXdb_ID6735 Ty3/gypsy_CL226 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCGTTGCCGGGGA (tRNA-Asp) - not tested Mtruncatula285_706 REXdb_ID7370 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_708_rc REXdb_ID12658 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_709 REXdb_ID7333 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_71_rc REXdb_ID7289 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_710 REXdb_ID4482 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Mtruncatula285_712 REXdb_ID3345 Ty1/copia_CL208 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_713_rc REXdb_ID7388 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_715_rc REXdb_ID4483 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_716 REXdb_ID677 Ty1/copia_CL691 (1) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 - - not tested Mtruncatula285_718_rc REXdb_ID7377 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_719 REXdb_ID12674 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_720_rc REXdb_ID7281 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_722 REXdb_ID5247 Ty1/copia_CL065 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCGCCCACCGTGGGGC (tRNA-Lys) - not tested Mtruncatula285_724_rc REXdb_ID7337 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_725 REXdb_ID7342 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_727 REXdb_ID4484 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_728_rc REXdb_ID4485 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 4 TGGAGATCCAGA (tRNA-Ala) - not tested Mtruncatula285_730_rc REXdb_ID4719 Ty1/copia_CL135 (7) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTTAGGTTCGATT not tested Mtruncatula285_732_rc REXdb_ID7298 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_733_rc REXdb_ID12663 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_735 REXdb_ID7338 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_736 REXdb_ID5248 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Mtruncatula285_738 REXdb_ID7339 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_739_rc REXdb_ID5249 Ty1/copia_CL065 (14) Class_I::LTR::Ty1/copia::Tork - + + + + - - - - - not tested not tested 5 TGGCGCCCACCGTGGGGC (tRNA-Lys) - not tested Mtruncatula285_74_rc REXdb_ID3346 Ty1/copia_CL549 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAAGCA (tRNA-Ile) - not tested Mtruncatula285_747_rc REXdb_ID5250 Ty1/copia_CL166 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_748_rc REXdb_ID678 Ty1/copia_CL692 (1) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGTTG (tRNA-?) - not tested Mtruncatula285_749 REXdb_ID12675 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_751_rc REXdb_ID4486 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_754 REXdb_ID679 Ty1/copia_CL209 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGTTG (tRNA-?) - not tested Mtruncatula285_755_rc REXdb_ID7344 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_758 REXdb_ID13688 Ty3/gypsy_CL569 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina - + + + + - + - - - not tested not tested 5 TGGTGCTTTCATTGAC (tRNA-Thr) - not tested Mtruncatula285_760 REXdb_ID3347 Ty1/copia_CL293 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCTGAGCTC (tRNA-Val) - not tested Mtruncatula285_762 REXdb_ID5251 Ty1/copia_CL166 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_763_rc REXdb_ID3348 Ty1/copia_CL290 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCAAGAG (tRNA-?) - not tested Mtruncatula285_765 REXdb_ID4487 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_766_rc REXdb_ID7374 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_767 REXdb_ID4488 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_768_rc REXdb_ID4489 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Mtruncatula285_769_rc REXdb_ID7360 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_771 REXdb_ID5252 Ty1/copia_CL065 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCGCCCACCGTGGGGC (tRNA-Lys) - not tested Mtruncatula285_773 REXdb_ID5253 Ty1/copia_CL065 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCGCCCACCGTGGGGC (tRNA-Lys) - not tested Mtruncatula285_776_rc REXdb_ID12690 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_777 REXdb_ID680 Ty1/copia_CL209 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGTTG (tRNA-?) - not tested Mtruncatula285_779 REXdb_ID12704 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Mtruncatula285_78 REXdb_ID4490 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_780 REXdb_ID681 Ty1/copia_CL291 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAAC (tRNA-Met) - not tested Mtruncatula285_781 REXdb_ID7306 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGAGAT (tRNA-Cys) - not tested Mtruncatula285_782_rc REXdb_ID11931 Ty3/gypsy_CL225 (3) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGCATCATAGC (tRNA-?) - not tested Mtruncatula285_785 REXdb_ID4491 Ty1/copia_CL048 (20) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCAGG (tRNA-Met) - not tested Mtruncatula285_786_rc REXdb_ID7307 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_787_rc REXdb_ID13689 Ty3/gypsy_CL570 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - - - - - - - 5 TGGTGCTTTCATTG (tRNA-Thr) - not tested Mtruncatula285_788 REXdb_ID7389 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_79 REXdb_ID682 Ty1/copia_CL134 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Mtruncatula285_790_rc REXdb_ID7381 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCAACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_791_rc REXdb_ID7591 Ty3/gypsy_CL228 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGG (tRNA-Arg) - not tested Mtruncatula285_797_rc REXdb_ID13371 Ty3/gypsy_CL174 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCACCCACAA (tRNA-Lys) - not tested Mtruncatula285_801_rc REXdb_ID13370 Ty3/gypsy_CL174 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCACCCACAA (tRNA-Lys) - not tested Mtruncatula285_805_rc REXdb_ID7363 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_806 REXdb_ID13517 Ty3/gypsy_CL308 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAAA (tRNA-Met) - not tested Mtruncatula285_81 REXdb_ID683 Ty1/copia_CL551 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCATTCT (tRNA-?) - not tested Mtruncatula285_811_rc REXdb_ID12697 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Mtruncatula285_812 REXdb_ID13690 Ty3/gypsy_CL571 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTT (tRNA-Thr) - not tested Mtruncatula285_814_rc REXdb_ID12682 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay - + + + + - + - - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) GTATCAGAGCA not tested Mtruncatula285_815_rc REXdb_ID4493 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_818_rc REXdb_ID7326 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_819 REXdb_ID684 Ty1/copia_CL292 (4) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_821_rc REXdb_ID4494 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_822 REXdb_ID7313 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_83 REXdb_ID12673 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_831_rc REXdb_ID4495 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Mtruncatula285_832 REXdb_ID7308 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_835 REXdb_ID7390 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_836_rc REXdb_ID7361 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_837_rc REXdb_ID4496 Ty1/copia_CL048 (20) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_84 REXdb_ID7290 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCAACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_840 REXdb_ID7309 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_841 REXdb_ID12678 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_842 REXdb_ID12679 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_846 REXdb_ID7327 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_847 REXdb_ID7314 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_848 REXdb_ID7291 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGA (tRNA-Arg) - not tested Mtruncatula285_849_rc REXdb_ID7282 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTTCACTGGGGAT (tRNA-Arg) - not tested Mtruncatula285_850 REXdb_ID4497 Ty1/copia_CL048 (20) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 4 - - not tested Mtruncatula285_851 REXdb_ID4498 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_852 REXdb_ID685 Ty1/copia_CL291 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACTCC (tRNA-?) - not tested Mtruncatula285_854 REXdb_ID5254 Ty1/copia_CL065 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCGCCCACCGTGGGGC (tRNA-Lys) - not tested Mtruncatula285_857 REXdb_ID686 Ty1/copia_CL209 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGTTG (tRNA-?) - not tested Mtruncatula285_858 REXdb_ID12686 Ty3/gypsy_CL030 (53) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Mtruncatula285_86_rc REXdb_ID687 Ty1/copia_CL289 (4) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCC (tRNA-Met) - not tested Mtruncatula285_9_rc REXdb_ID4500 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Mtruncatula285_93_rc REXdb_ID4499 Ty1/copia_CL010 (66) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested MusA_ID235 REXdb_ID13822 Ty3/gypsy_CL573 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - not tested not tested not tested not tested MusA_ID43 REXdb_ID12328 Ty3/gypsy_CL292 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - not tested not tested not tested not tested MusA1_ID67 REXdb_ID12023 Ty3/gypsy_CL572 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - not tested not tested not tested not tested MusB1_ID98 REXdb_ID12024 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - not tested not tested not tested not tested Ogre-LE1 REXdb_ID7609 Ty3/gypsy_CL574 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - + - not tested not tested not tested not tested Ogre-MT1B REXdb_ID7610 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - not tested not tested not tested not tested Ogre-MT1C REXdb_ID7611 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - not tested not tested not tested not tested Ogre-MT2 REXdb_ID7612 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - not tested not tested not tested not tested Ogre-MT3 REXdb_ID7613 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - not tested not tested not tested not tested Ogre-PS1 REXdb_ID7614 Ty3/gypsy_CL293 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - not tested not tested not tested not tested Ogre-PT2 REXdb_ID7615 Ty3/gypsy_CL078 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - + not tested not tested not tested not tested Ogre-PT3 REXdb_ID7616 Ty3/gypsy_CL078 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + - - - - - + - not tested not tested not tested not tested Ogre-SD1 REXdb_ID7617 Ty3/gypsy_CL575 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - not tested not tested not tested not tested Ogre-VP1 REXdb_ID7618 Ty3/gypsy_CL013 (143) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - not tested not tested not tested not tested OryGr1_ID245 REXdb_ID12025 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested OryM1_ID101 REXdb_ID12026 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested OryM3_ID103 REXdb_ID12027 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested OryP1_ID105 REXdb_ID12028 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested OryP2_ID106 REXdb_ID12029 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested OryS_ID254 REXdb_ID13112 Ty3/gypsy_CL314 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + + - not tested not tested not tested not tested Osativa204_1 REXdb_ID12514 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_1000_rc REXdb_ID9184 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_1005_rc REXdb_ID688 Ty1/copia_CL056 (16) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_1007_rc REXdb_ID9500 Ty3/gypsy_CL049 (22) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTA (tRNA-Arg) - not tested Osativa204_1009 REXdb_ID4720 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTAT not tested Osativa204_101 REXdb_ID7584 Ty3/gypsy_CL158 (5) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCGCTGGGGA (tRNA-Arg) - not tested Osativa204_1010 REXdb_ID8292 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_1011_rc REXdb_ID8356 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAAGTAGGGG (tRNA-Arg) - not tested Osativa204_1015_rc REXdb_ID4721 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_1016 REXdb_ID8394 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_1018_rc REXdb_ID8390 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Osativa204_1019_rc REXdb_ID8297 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_102_rc REXdb_ID689 Ty1/copia_CL210 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_1021_rc REXdb_ID13526 Ty3/gypsy_CL315 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Osativa204_1022_rc REXdb_ID9506 Ty3/gypsy_CL049 (22) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCTAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_1025_rc REXdb_ID4722 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTT not tested Osativa204_1026 REXdb_ID12515 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_1028 REXdb_ID12516 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_103 REXdb_ID8411 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 - - not tested Osativa204_1031 REXdb_ID9229 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGTGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_1032_rc REXdb_ID8439 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_1033_rc REXdb_ID8420 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_1034 REXdb_ID9198 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_1035_rc REXdb_ID9241 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGATAGGGGT (tRNA-Arg) - not tested Osativa204_1036 REXdb_ID8400 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_1038 REXdb_ID8340 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_104_rc REXdb_ID12545 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + - + 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_1041 REXdb_ID12527 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_1043 REXdb_ID12540 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_1045 REXdb_ID690 Ty1/copia_CL118 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Osativa204_1046_rc REXdb_ID3349 Ty1/copia_CL276 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTCGA (tRNA-Met) - not tested Osativa204_1048_rc REXdb_ID12525 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_1049_rc REXdb_ID8442 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_1050_rc REXdb_ID5255 Ty1/copia_CL397 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_1051 REXdb_ID3350 Ty1/copia_CL555 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - + - 5 TGGTATCAAAGCCATGT (tRNA-Met) - not tested Osativa204_1052 REXdb_ID4723 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_1053 REXdb_ID4724 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_1054 REXdb_ID4725 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - - not tested Osativa204_1057_rc REXdb_ID4726 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_1059 REXdb_ID8304 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_107_rc REXdb_ID9192 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Osativa204_1070_rc REXdb_ID8373 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_1071 REXdb_ID13528 Ty3/gypsy_CL316 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATTAGAGCA (tRNA-Met) - not tested Osativa204_1072_rc REXdb_ID8416 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Osativa204_1074 REXdb_ID3351 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Osativa204_1077 REXdb_ID12582 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_1078_rc REXdb_ID12523 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_1080_rc REXdb_ID7562 Ty3/gypsy_CL114 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGTGGGACTTGT (tRNA-Gly) - not tested Osativa204_1081_rc REXdb_ID4727 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - - not tested Osativa204_1082_rc REXdb_ID8421 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_1083 REXdb_ID13691 Ty3/gypsy_CL576 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGACT (tRNA-?) - not tested Osativa204_1084_rc REXdb_ID8458 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_1087 REXdb_ID9238 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Osativa204_1088 REXdb_ID13692 Ty3/gypsy_CL577 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Osativa204_1089 REXdb_ID691 Ty1/copia_CL080 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Osativa204_1090 REXdb_ID692 Ty1/copia_CL294 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_1091_rc REXdb_ID9204 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_1093 REXdb_ID9217 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTTG (tRNA-Arg) - not tested Osativa204_1098_rc REXdb_ID13693 Ty3/gypsy_CL578 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_1101_rc REXdb_ID8450 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_1102_rc REXdb_ID8368 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_1106 REXdb_ID12612 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_1108_rc REXdb_ID8465 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_111_rc REXdb_ID9193 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Osativa204_1111 REXdb_ID12575 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_1116_rc REXdb_ID12580 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCAGGTT (tRNA-Met) - not tested Osativa204_1117_rc REXdb_ID7565 Ty3/gypsy_CL114 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCGGTGGGACT (tRNA-Arg) - not tested Osativa204_1119 REXdb_ID12524 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCAGGTTTG (tRNA-Met) - not tested Osativa204_112_rc REXdb_ID12624 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + + + 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_1120_rc REXdb_ID12592 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_1121_rc REXdb_ID8321 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_1124 REXdb_ID8453 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 - - not tested Osativa204_1127 REXdb_ID12555 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_113 REXdb_ID12602 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + + 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_1130_rc REXdb_ID12635 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_1131_rc REXdb_ID4728 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_1132_rc REXdb_ID9520 Ty3/gypsy_CL049 (22) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGTGCTCAAGGT (tRNA-Lys) - not tested Osativa204_1133_rc REXdb_ID8424 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_1137 REXdb_ID9767 Ty3/gypsy_CL579 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - + not tested not tested 5 TGGCGCCGACCGTGGGA (tRNA-Lys) - not tested Osativa204_1138 REXdb_ID11331 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Osativa204_114 REXdb_ID12517 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_1143 REXdb_ID7585 Ty3/gypsy_CL158 (5) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCGCTGGGGA (tRNA-Arg) - not tested Osativa204_1144 REXdb_ID3352 Ty1/copia_CL398 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Osativa204_1146 REXdb_ID9671 Ty3/gypsy_CL094 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACCGTGGGGA (tRNA-Lys) - not tested Osativa204_1148_rc REXdb_ID8382 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_1149_rc REXdb_ID8327 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_115 REXdb_ID9504 Ty3/gypsy_CL049 (22) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGAA (tRNA-Arg) - not tested Osativa204_1152 REXdb_ID4729 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTGAT not tested Osativa204_1153_rc REXdb_ID13694 Ty3/gypsy_CL580 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Osativa204_1154_rc REXdb_ID9185 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTTG (tRNA-Arg) - not tested Osativa204_1155 REXdb_ID3353 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 4 - - not tested Osativa204_1157 REXdb_ID12559 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_1159_rc REXdb_ID12613 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + + 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_116 REXdb_ID4730 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_1160_rc REXdb_ID9517 Ty3/gypsy_CL049 (22) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGTGCTCAAGGT (tRNA-Lys) - not tested Osativa204_1161_rc REXdb_ID12619 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + + + 5 TGGTTTCAGATG (tRNA-?) - not tested Osativa204_1162_rc REXdb_ID12643 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay - + + + + - + - + - not tested not tested 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_1164 REXdb_ID12550 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_1166_rc REXdb_ID12614 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + + 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_1170 REXdb_ID12547 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_1173_rc REXdb_ID12594 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_1177_rc REXdb_ID12630 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + + 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_1178_rc REXdb_ID9194 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_1179 REXdb_ID9239 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGAAG (tRNA-Arg) - not tested Osativa204_118_rc REXdb_ID4732 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_1180 REXdb_ID8378 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_1183 REXdb_ID9196 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Osativa204_1184_rc REXdb_ID12620 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_1185_rc REXdb_ID4731 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTGAT not tested Osativa204_1186_rc REXdb_ID8352 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_1188 REXdb_ID11352 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATTAGAGC (tRNA-Met) - not tested Osativa204_1189_rc REXdb_ID9195 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_119_rc REXdb_ID12637 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Osativa204_1191_rc REXdb_ID4733 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_1193 REXdb_ID13058 Ty3/gypsy_CL229 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Osativa204_1194_rc REXdb_ID12571 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_1197 REXdb_ID8377 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_1198_rc REXdb_ID8371 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_12 REXdb_ID4501 Ty1/copia_CL103 (9) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_1200 REXdb_ID693 Ty1/copia_CL295 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Osativa204_1202 REXdb_ID9214 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_1205 REXdb_ID12625 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + + + 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_1207_rc REXdb_ID9205 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Osativa204_121_rc REXdb_ID9227 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_1210 REXdb_ID4734 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - AAAAACCTTATT not tested Osativa204_1211_rc REXdb_ID13695 Ty3/gypsy_CL581 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGAC (tRNA-Met) - not tested Osativa204_1212_rc REXdb_ID8468 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_1213_rc REXdb_ID694 Ty1/copia_CL556 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_1214 REXdb_ID8397 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_1216 REXdb_ID12598 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - + 5 TGGTGGTACTAA (tRNA-Val) - not tested Osativa204_1217_rc REXdb_ID8363 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGTT (tRNA-Arg) - not tested Osativa204_1219 REXdb_ID4735 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_1220_rc REXdb_ID4502 Ty1/copia_CL103 (9) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_1221_rc REXdb_ID695 Ty1/copia_CL557 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Osativa204_1222_rc REXdb_ID3354 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Osativa204_1224 REXdb_ID8422 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_1225 REXdb_ID4503 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCAAGGT (tRNA-Met) - not tested Osativa204_123_rc REXdb_ID4736 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTGAT not tested Osativa204_1230 REXdb_ID13696 Ty3/gypsy_CL582 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - + - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Osativa204_1231_rc REXdb_ID9505 Ty3/gypsy_CL049 (22) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_1235 REXdb_ID8346 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGTT (tRNA-Arg) - not tested Osativa204_1236_rc REXdb_ID8372 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_1237 REXdb_ID9501 Ty3/gypsy_CL049 (22) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_1238 REXdb_ID13530 Ty3/gypsy_CL317 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Osativa204_1239_rc REXdb_ID9673 Ty3/gypsy_CL094 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 6 TGGCGCCGACCGTGGGGA (tRNA-Lys) - not tested Osativa204_1241_rc REXdb_ID9512 Ty3/gypsy_CL049 (22) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGTGCTCAAGGT (tRNA-Lys) - not tested Osativa204_1242_rc REXdb_ID4737 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_1244_rc REXdb_ID9703 Ty3/gypsy_CL159 (5) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCACCGTCCGTGGGGA (tRNA-Lys) - not tested Osativa204_1245_rc REXdb_ID9210 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_1246 REXdb_ID696 Ty1/copia_CL080 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Osativa204_1247_rc REXdb_ID4738 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTGAT not tested Osativa204_1248 REXdb_ID8383 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_1249_rc REXdb_ID12626 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + + + 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_125 REXdb_ID8366 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_1251_rc REXdb_ID12543 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_1253 REXdb_ID2831 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Osativa204_1254 REXdb_ID12552 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_1255_rc REXdb_ID13531 Ty3/gypsy_CL317 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Osativa204_1256 REXdb_ID8367 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_1257_rc REXdb_ID9220 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_127_rc REXdb_ID2832 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Osativa204_130_rc REXdb_ID8337 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_131_rc REXdb_ID8406 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_133 REXdb_ID8438 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_135_rc REXdb_ID13527 Ty3/gypsy_CL315 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Osativa204_137 REXdb_ID4739 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_138 REXdb_ID12589 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_141_rc REXdb_ID4740 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_142 REXdb_ID8431 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_144 REXdb_ID697 Ty1/copia_CL118 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Osativa204_145 REXdb_ID8324 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_146_rc REXdb_ID2833 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Osativa204_147 REXdb_ID9218 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_148 REXdb_ID13697 Ty3/gypsy_CL583 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 4 TGGTATCAGATTC (tRNA-Met) - not tested Osativa204_149_rc REXdb_ID12574 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_151_rc REXdb_ID8374 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_152_rc REXdb_ID12585 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + + + 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_153 REXdb_ID8441 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_154_rc REXdb_ID8448 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_155 REXdb_ID12572 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_157 REXdb_ID9768 Ty3/gypsy_CL584 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_160_rc REXdb_ID4741 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_161 REXdb_ID3355 Ty1/copia_CL296 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATGAGAGC (tRNA-Met) - not tested Osativa204_163 REXdb_ID4742 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_164_rc REXdb_ID12533 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_165 REXdb_ID8299 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_167 REXdb_ID8334 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_168_rc REXdb_ID3356 Ty1/copia_CL297 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTTCCGGCGGG (tRNA-Ile) - not tested Osativa204_169_rc REXdb_ID8401 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_170_rc REXdb_ID12522 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_171 REXdb_ID698 Ty1/copia_CL210 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_172_rc REXdb_ID9704 Ty3/gypsy_CL159 (5) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCCGTGGGGA (tRNA-Lys) - not tested Osativa204_174_rc REXdb_ID8376 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Osativa204_18_rc REXdb_ID7599 Ty3/gypsy_CL318 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre - + + + + + - - - + not tested not tested 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Osativa204_180_rc REXdb_ID12541 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + - + 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_181_rc REXdb_ID12919 Ty3/gypsy_CL079 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + + - 4 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_186_rc REXdb_ID8386 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Osativa204_187 REXdb_ID13698 Ty3/gypsy_CL585 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_188_rc REXdb_ID8463 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_189 REXdb_ID12599 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + + + 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_19 REXdb_ID12922 Ty3/gypsy_CL079 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_190 REXdb_ID12920 Ty3/gypsy_CL079 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_191_rc REXdb_ID8294 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_192_rc REXdb_ID12577 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Osativa204_193_rc REXdb_ID12558 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_195_rc REXdb_ID13093 Ty3/gypsy_CL314 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + + + 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Osativa204_196 REXdb_ID8364 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Osativa204_197_rc REXdb_ID9705 Ty3/gypsy_CL159 (5) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCCGTGGGGA (tRNA-Lys) - not tested Osativa204_198_rc REXdb_ID9230 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGTTG (tRNA-Arg) - not tested Osativa204_199_rc REXdb_ID9507 Ty3/gypsy_CL049 (22) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_2 REXdb_ID8447 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_20_rc REXdb_ID9190 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_200_rc REXdb_ID699 Ty1/copia_CL080 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGATCC (tRNA-Met) - not tested Osativa204_201_rc REXdb_ID700 Ty1/copia_CL399 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_202 REXdb_ID12930 Ty3/gypsy_CL079 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_205 REXdb_ID3357 Ty1/copia_CL277 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_207_rc REXdb_ID8407 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_208 REXdb_ID12526 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_21_rc REXdb_ID4744 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTGAT not tested Osativa204_210 REXdb_ID12553 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_214 REXdb_ID8423 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_215 REXdb_ID8427 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_216_rc REXdb_ID4743 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_217 REXdb_ID8387 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 - - not tested Osativa204_218 REXdb_ID9206 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTTG (tRNA-Arg) - not tested Osativa204_22_rc REXdb_ID8452 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_221 REXdb_ID701 Ty1/copia_CL557 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Osativa204_222_rc REXdb_ID8402 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_223_rc REXdb_ID8322 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Osativa204_228_rc REXdb_ID3358 Ty1/copia_CL297 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Osativa204_230_rc REXdb_ID8375 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_231_rc REXdb_ID702 Ty1/copia_CL399 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGTGA (tRNA-?) - not tested Osativa204_232_rc REXdb_ID703 Ty1/copia_CL056 (16) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_234_rc REXdb_ID3359 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 - - not tested Osativa204_235 REXdb_ID704 Ty1/copia_CL558 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGATA (tRNA-?) - not tested Osativa204_237_rc REXdb_ID9211 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_238_rc REXdb_ID8379 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_24_rc REXdb_ID3360 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Osativa204_240 REXdb_ID8306 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_241_rc REXdb_ID9508 Ty3/gypsy_CL049 (22) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Osativa204_242_rc REXdb_ID13059 Ty3/gypsy_CL229 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Osativa204_243_rc REXdb_ID5256 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATTAGAGCT (tRNA-Met) - not tested Osativa204_244_rc REXdb_ID2834 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Osativa204_246_rc REXdb_ID12641 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAACC (tRNA-Met) - not tested Osativa204_25 REXdb_ID8365 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_250 REXdb_ID4504 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCAAGGT (tRNA-Met) - not tested Osativa204_252 REXdb_ID4745 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTGAT not tested Osativa204_253 REXdb_ID705 Ty1/copia_CL080 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Osativa204_254 REXdb_ID12578 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Osativa204_26 REXdb_ID9224 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Osativa204_260_rc REXdb_ID8312 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_261_rc REXdb_ID9511 Ty3/gypsy_CL049 (22) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGTGCTCAAGGT (tRNA-Lys) - not tested Osativa204_265_rc REXdb_ID9521 Ty3/gypsy_CL049 (22) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - - - - 5 TGGTGCTCAAGGT (tRNA-Lys) - not tested Osativa204_266 REXdb_ID7564 Ty3/gypsy_CL114 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + + - 5 TGGCACGCCCTGTGGGAC (tRNA-Arg) - not tested Osativa204_268_rc REXdb_ID4505 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 - - not tested Osativa204_269_rc REXdb_ID11332 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Osativa204_27_rc REXdb_ID13433 Ty3/gypsy_CL230 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAGGTT (tRNA-Met) - not tested Osativa204_273_rc REXdb_ID3361 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Osativa204_275 REXdb_ID4506 Ty1/copia_CL103 (9) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_278 REXdb_ID13116 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 4 TGGTATCACGAT (tRNA-?) - not tested Osativa204_280 REXdb_ID8325 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_281_rc REXdb_ID12560 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + + 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_29_rc REXdb_ID8425 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_295_rc REXdb_ID11347 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Osativa204_297_rc REXdb_ID4507 Ty1/copia_CL128 (7) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATTAGAGCCT (tRNA-Met) - not tested Osativa204_30 REXdb_ID8433 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_303_rc REXdb_ID13142 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Osativa204_305_rc REXdb_ID7603 Ty3/gypsy_CL586 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCGCTGGGGGTCGA (tRNA-His) - not tested Osativa204_307_rc REXdb_ID8466 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTGGGGG (tRNA-Arg) - not tested Osativa204_309 REXdb_ID8311 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_31_rc REXdb_ID13532 Ty3/gypsy_CL319 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAAAGCC (tRNA-Met) - not tested Osativa204_311 REXdb_ID8296 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_312 REXdb_ID4746 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTGAT not tested Osativa204_313 REXdb_ID11334 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Osativa204_315_rc REXdb_ID9236 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGAGGT (tRNA-Arg) - not tested Osativa204_317_rc REXdb_ID12632 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + + + 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_318_rc REXdb_ID3362 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Osativa204_32 REXdb_ID8460 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_320_rc REXdb_ID8457 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_321 REXdb_ID7587 Ty3/gypsy_CL158 (5) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCACT (tRNA-Arg) - not tested Osativa204_324 REXdb_ID706 Ty1/copia_CL400 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Osativa204_325_rc REXdb_ID9502 Ty3/gypsy_CL049 (22) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCACCAGGTAGGGG (tRNA-Arg) - not tested Osativa204_326_rc REXdb_ID12535 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_327_rc REXdb_ID2835 Ty1/copia_CL401 (3) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_328_rc REXdb_ID9197 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_332 REXdb_ID13699 Ty3/gypsy_CL587 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATTAGAGCCT (tRNA-Met) - not tested Osativa204_337_rc REXdb_ID3363 Ty1/copia_CL296 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Osativa204_338_rc REXdb_ID8403 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_342 REXdb_ID12928 Ty3/gypsy_CL079 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_343 REXdb_ID7566 Ty3/gypsy_CL114 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre - + + + + + - - - + not tested not tested 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Osativa204_347_rc REXdb_ID8369 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_349_rc REXdb_ID12583 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + + + 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_351 REXdb_ID8391 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_356 REXdb_ID13293 Ty3/gypsy_CL125 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Osativa204_357_rc REXdb_ID4508 Ty1/copia_CL128 (7) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_358_rc REXdb_ID707 Ty1/copia_CL210 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_362_rc REXdb_ID12633 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Osativa204_364 REXdb_ID2836 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Osativa204_365 REXdb_ID12563 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAACC (tRNA-Met) - not tested Osativa204_366 REXdb_ID13700 Ty3/gypsy_CL588 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_368_rc REXdb_ID12556 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_37_rc REXdb_ID3364 Ty1/copia_CL296 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_371_rc REXdb_ID12927 Ty3/gypsy_CL079 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 - - not tested Osativa204_372_rc REXdb_ID8339 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Osativa204_375_rc REXdb_ID12931 Ty3/gypsy_CL079 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + + 5 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_376 REXdb_ID8392 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGTT (tRNA-Arg) - not tested Osativa204_377 REXdb_ID12925 Ty3/gypsy_CL079 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + + + 5 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_379 REXdb_ID12521 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_38_rc REXdb_ID8357 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_382 REXdb_ID12520 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_386 REXdb_ID9706 Ty3/gypsy_CL159 (5) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCCGTGGGGA (tRNA-Lys) - not tested Osativa204_387 REXdb_ID8440 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCT (tRNA-Arg) - not tested Osativa204_388_rc REXdb_ID8315 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_389 REXdb_ID8396 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGTGCCAGGTAGGGG (tRNA-Arg) - not tested Osativa204_390_rc REXdb_ID3365 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Osativa204_391 REXdb_ID8398 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_392_rc REXdb_ID4747 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_393_rc REXdb_ID12924 Ty3/gypsy_CL079 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + + + 5 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_395_rc REXdb_ID8359 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_4_rc REXdb_ID8426 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_40 REXdb_ID4748 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTGAT not tested Osativa204_400 REXdb_ID708 Ty1/copia_CL056 (16) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 6 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_401 REXdb_ID8308 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGGGCGCCAGG (tRNA-?) - not tested Osativa204_405_rc REXdb_ID8295 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_407 REXdb_ID4509 Ty1/copia_CL103 (9) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_408_rc REXdb_ID4749 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_409 REXdb_ID8404 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_411_rc REXdb_ID9202 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_412 REXdb_ID3366 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Osativa204_413_rc REXdb_ID3367 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Osativa204_415 REXdb_ID12923 Ty3/gypsy_CL079 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + + - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_418 REXdb_ID13143 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCGCGGT (tRNA-?) - not tested Osativa204_419_rc REXdb_ID3368 Ty1/copia_CL297 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTTCCGGCGGG (tRNA-Ile) - not tested Osativa204_420_rc REXdb_ID13434 Ty3/gypsy_CL230 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGACAGGTT (tRNA-Met) - not tested Osativa204_421 REXdb_ID8326 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_422_rc REXdb_ID8343 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_424_rc REXdb_ID8408 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_426 REXdb_ID8409 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_428 REXdb_ID4750 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTGAT not tested Osativa204_429 REXdb_ID4510 Ty1/copia_CL103 (9) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_43_rc REXdb_ID3369 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATTAGAGCCA (tRNA-Met) - not tested Osativa204_431 REXdb_ID2837 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Osativa204_432 REXdb_ID8461 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_434_rc REXdb_ID8455 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_442_rc REXdb_ID4751 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTGAT not tested Osativa204_443 REXdb_ID8332 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Osativa204_448_rc REXdb_ID12567 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Osativa204_451_rc REXdb_ID12607 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + + + 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_453_rc REXdb_ID12615 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + + 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_454 REXdb_ID8360 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_455 REXdb_ID2838 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Osativa204_456 REXdb_ID8388 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCT (tRNA-Arg) - not tested Osativa204_458 REXdb_ID8370 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_459 REXdb_ID9509 Ty3/gypsy_CL049 (22) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_46 REXdb_ID8309 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGTGCCAGGTAGGGG (tRNA-Arg) - not tested Osativa204_460_rc REXdb_ID709 Ty1/copia_CL056 (16) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_461 REXdb_ID3370 Ty1/copia_CL276 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Osativa204_463 REXdb_ID9207 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_464_rc REXdb_ID7567 Ty3/gypsy_CL114 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 - - not tested Osativa204_465 REXdb_ID12651 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_466_rc REXdb_ID12586 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_467_rc REXdb_ID7563 Ty3/gypsy_CL114 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Osativa204_468 REXdb_ID8307 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_469_rc REXdb_ID3371 Ty1/copia_CL297 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCATAGC (tRNA-Met) - not tested Osativa204_47_rc REXdb_ID8318 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_470 REXdb_ID9518 Ty3/gypsy_CL049 (22) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGTGCTCAAGGT (tRNA-Lys) - not tested Osativa204_472 REXdb_ID9231 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAAG (tRNA-?) - not tested Osativa204_473_rc REXdb_ID12531 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_474_rc REXdb_ID13435 Ty3/gypsy_CL230 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGACAGGTT (tRNA-Met) - not tested Osativa204_477 REXdb_ID12561 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_478 REXdb_ID710 Ty1/copia_CL118 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCGAG (tRNA-Met) - not tested Osativa204_48_rc REXdb_ID2839 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Osativa204_480_rc REXdb_ID9510 Ty3/gypsy_CL049 (22) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTGCTCAAGGT (tRNA-Lys) - not tested Osativa204_481 REXdb_ID4752 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_482 REXdb_ID2561 Ty1/copia_CL211 (5) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Osativa204_486_rc REXdb_ID12638 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + + + 5 TGGTATTAGAGCC (tRNA-Met) - not tested Osativa204_488_rc REXdb_ID9674 Ty3/gypsy_CL094 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACCGTGGGGA (tRNA-Lys) - not tested Osativa204_49_rc REXdb_ID9676 Ty3/gypsy_CL094 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGACCGTGGGGA (tRNA-Lys) - not tested Osativa204_490_rc REXdb_ID4511 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + + - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Osativa204_494_rc REXdb_ID12608 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_5 REXdb_ID2840 Ty1/copia_CL401 (3) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_500_rc REXdb_ID711 Ty1/copia_CL295 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_501_rc REXdb_ID712 Ty1/copia_CL295 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Osativa204_503 REXdb_ID4512 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Osativa204_504_rc REXdb_ID1916 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 4 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_506_rc REXdb_ID8464 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGGTAGGGGTCG (tRNA-Arg) - not tested Osativa204_51 REXdb_ID8316 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_512_rc REXdb_ID8298 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_513_rc REXdb_ID4753 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_514 REXdb_ID8333 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_517 REXdb_ID8319 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_519 REXdb_ID8301 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Osativa204_521 REXdb_ID8347 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_523 REXdb_ID9513 Ty3/gypsy_CL049 (22) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTGCTCAAGGT (tRNA-Lys) - not tested Osativa204_524 REXdb_ID9514 Ty3/gypsy_CL049 (22) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGTGCTCAAGGT (tRNA-Lys) - not tested Osativa204_526 REXdb_ID4754 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_527 REXdb_ID8348 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGA (tRNA-Arg) - not tested Osativa204_529_rc REXdb_ID8437 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAAGTAGGGG (tRNA-Arg) - not tested Osativa204_531 REXdb_ID8313 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_533 REXdb_ID8338 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_535 REXdb_ID4755 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_536 REXdb_ID8358 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_537_rc REXdb_ID8310 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_540_rc REXdb_ID4756 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - - not tested Osativa204_542 REXdb_ID9237 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTTG (tRNA-Arg) - not tested Osativa204_543_rc REXdb_ID8344 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_545 REXdb_ID8446 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Osativa204_546 REXdb_ID8305 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_547 REXdb_ID4757 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_549 REXdb_ID3372 Ty1/copia_CL276 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Osativa204_551_rc REXdb_ID4513 Ty1/copia_CL103 (9) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_552_rc REXdb_ID713 Ty1/copia_CL056 (16) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Osativa204_553 REXdb_ID8381 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_554 REXdb_ID8380 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_555_rc REXdb_ID9519 Ty3/gypsy_CL049 (22) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Osativa204_556 REXdb_ID12652 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_557 REXdb_ID7569 Ty3/gypsy_CL114 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 4 - - not tested Osativa204_558 REXdb_ID8393 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_56 REXdb_ID12639 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_560_rc REXdb_ID8328 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Osativa204_561_rc REXdb_ID8443 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_562 REXdb_ID4758 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_564_rc REXdb_ID8435 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Osativa204_566_rc REXdb_ID8399 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_567 REXdb_ID9225 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTTG (tRNA-Arg) - not tested Osativa204_569_rc REXdb_ID12536 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_574 REXdb_ID12595 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_575_rc REXdb_ID9675 Ty3/gypsy_CL094 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - + not tested not tested 5 TGGTGCCGACCGTGGGG (tRNA-Lys) - not tested Osativa204_58_rc REXdb_ID8451 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_581 REXdb_ID12568 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Osativa204_583 REXdb_ID8417 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_586 REXdb_ID9221 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGTTG (tRNA-Arg) - not tested Osativa204_589 REXdb_ID12569 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Osativa204_590_rc REXdb_ID12576 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Osativa204_593_rc REXdb_ID9228 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - + not tested not tested 5 TGGCGCGTCAGGTAGGGG (tRNA-Arg) - not tested Osativa204_596_rc REXdb_ID12636 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + + 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_598_rc REXdb_ID9212 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_600_rc REXdb_ID9215 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_604 REXdb_ID12609 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - + 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_605 REXdb_ID12581 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + + 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_608_rc REXdb_ID2841 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCGA (tRNA-Met) - not tested Osativa204_609_rc REXdb_ID8428 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_61 REXdb_ID4759 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_611_rc REXdb_ID12579 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_612_rc REXdb_ID1917 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_615_rc REXdb_ID12566 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_618_rc REXdb_ID12603 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + + 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_619_rc REXdb_ID9188 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_62 REXdb_ID12621 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + + + 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_620_rc REXdb_ID8389 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_622_rc REXdb_ID9219 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTTG (tRNA-Arg) - not tested Osativa204_624_rc REXdb_ID9678 Ty3/gypsy_CL094 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGACCGTGGGGA (tRNA-Lys) - not tested Osativa204_625_rc REXdb_ID13140 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACGAT (tRNA-?) - not tested Osativa204_626_rc REXdb_ID3373 Ty1/copia_CL277 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_627_rc REXdb_ID8353 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Osativa204_628_rc REXdb_ID5257 Ty1/copia_CL397 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_629 REXdb_ID12645 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay - + + + + - + - + + not tested not tested 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_63 REXdb_ID4760 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAGAAACCTTTA not tested Osativa204_632_rc REXdb_ID9208 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGGTAGGGGT (tRNA-Arg) - not tested Osativa204_643 REXdb_ID13701 Ty3/gypsy_CL589 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Osativa204_646_rc REXdb_ID12653 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGTGC (tRNA-?) - not tested Osativa204_649_rc REXdb_ID2842 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Osativa204_651 REXdb_ID9203 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_652_rc REXdb_ID12642 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + + + 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_655_rc REXdb_ID9189 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_657 REXdb_ID11337 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Osativa204_658 REXdb_ID4761 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_659 REXdb_ID8454 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_660_rc REXdb_ID12557 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_664_rc REXdb_ID8362 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Osativa204_669_rc REXdb_ID11345 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGATC (tRNA-Met) - not tested Osativa204_67_rc REXdb_ID13702 Ty3/gypsy_CL590 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_674_rc REXdb_ID4762 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_678 REXdb_ID8350 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_681 REXdb_ID12587 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_689_rc REXdb_ID12646 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_691 REXdb_ID12593 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCAGGTTTA (tRNA-Met) - not tested Osativa204_693 REXdb_ID9515 Ty3/gypsy_CL049 (22) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGTGCTCAAGGT (tRNA-Lys) - not tested Osativa204_695 REXdb_ID4763 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - AAAAACCTGAT not tested Osativa204_696 REXdb_ID12648 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + + + 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_698 REXdb_ID4764 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_7 REXdb_ID5258 Ty1/copia_CL397 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_700_rc REXdb_ID12596 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_702 REXdb_ID8467 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Osativa204_703 REXdb_ID12600 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + + 4 - - not tested Osativa204_704_rc REXdb_ID9240 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGC (tRNA-?) - not tested Osativa204_705_rc REXdb_ID12518 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_706_rc REXdb_ID13703 Ty3/gypsy_CL591 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Osativa204_707_rc REXdb_ID8445 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_708_rc REXdb_ID13704 Ty3/gypsy_CL592 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTTTCTTGAA (tRNA-Leu) - not tested Osativa204_709_rc REXdb_ID7568 Ty3/gypsy_CL114 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 - - not tested Osativa204_71_rc REXdb_ID8335 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_711 REXdb_ID12590 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_712_rc REXdb_ID9223 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_714 REXdb_ID8449 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_715_rc REXdb_ID12562 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_716_rc REXdb_ID11338 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Osativa204_717 REXdb_ID3374 Ty1/copia_CL559 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Osativa204_718_rc REXdb_ID9191 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTTG (tRNA-Arg) - not tested Osativa204_719_rc REXdb_ID8432 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_72 REXdb_ID8323 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_722_rc REXdb_ID13534 Ty3/gypsy_CL320 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Osativa204_724 REXdb_ID8385 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_725 REXdb_ID13529 Ty3/gypsy_CL316 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_73_rc REXdb_ID12622 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + + 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Osativa204_730 REXdb_ID12616 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_731 REXdb_ID12597 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_733_rc REXdb_ID8429 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTA (tRNA-Arg) - not tested Osativa204_734_rc REXdb_ID8341 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Osativa204_736_rc REXdb_ID9677 Ty3/gypsy_CL094 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGACCGTGGGGA (tRNA-Lys) - not tested Osativa204_738 REXdb_ID9235 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_74_rc REXdb_ID4766 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_745 REXdb_ID7588 Ty3/gypsy_CL158 (5) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - not tested not tested + - 5 TGGCGACTCCGCTGGGGA (tRNA-Arg) - not tested Osativa204_748_rc REXdb_ID4765 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_749 REXdb_ID8329 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_75_rc REXdb_ID8314 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Osativa204_750_rc REXdb_ID8456 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_751_rc REXdb_ID8317 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_752_rc REXdb_ID4514 Ty1/copia_CL361 (3) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Osativa204_753 REXdb_ID13533 Ty3/gypsy_CL319 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAGA (tRNA-Met) - not tested Osativa204_755_rc REXdb_ID4767 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATTG not tested Osativa204_757 REXdb_ID12548 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_758 REXdb_ID12538 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_759_rc REXdb_ID8342 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Osativa204_76 REXdb_ID4768 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTAT not tested Osativa204_761 REXdb_ID3375 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 - - not tested Osativa204_762_rc REXdb_ID2562 Ty1/copia_CL211 (5) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCATGA (tRNA-Ile) Osativa204_763_rc REXdb_ID12549 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + - + 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_765_rc REXdb_ID8413 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Osativa204_766_rc REXdb_ID11339 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Osativa204_767 REXdb_ID8351 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_768_rc REXdb_ID714 Ty1/copia_CL056 (16) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_77 REXdb_ID8320 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_770_rc REXdb_ID3376 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Osativa204_772 REXdb_ID4515 Ty1/copia_CL128 (7) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_774 REXdb_ID715 Ty1/copia_CL056 (16) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Osativa204_776 REXdb_ID8355 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGTT (tRNA-Arg) - not tested Osativa204_778 REXdb_ID8361 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_780 REXdb_ID8462 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_781_rc REXdb_ID8395 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_782_rc REXdb_ID8302 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_783 REXdb_ID12926 Ty3/gypsy_CL079 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + + + 5 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_784_rc REXdb_ID4769 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_785_rc REXdb_ID716 Ty1/copia_CL056 (16) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGTT (tRNA-Met) - not tested Osativa204_787 REXdb_ID9233 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_79 REXdb_ID12650 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_790_rc REXdb_ID3377 Ty1/copia_CL398 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Osativa204_791_rc REXdb_ID4770 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_792 REXdb_ID9222 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_798 REXdb_ID13705 Ty3/gypsy_CL593 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Osativa204_799_rc REXdb_ID8349 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGAA (tRNA-Arg) - not tested Osativa204_802 REXdb_ID717 Ty1/copia_CL056 (16) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Osativa204_804_rc REXdb_ID9199 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_805_rc REXdb_ID718 Ty1/copia_CL056 (16) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Osativa204_806 REXdb_ID12921 Ty3/gypsy_CL079 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + + + 5 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_807 REXdb_ID2843 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Osativa204_808_rc REXdb_ID2844 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Osativa204_81_rc REXdb_ID8336 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_810 REXdb_ID12546 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_814 REXdb_ID8345 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_815 REXdb_ID3378 Ty1/copia_CL296 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Osativa204_817_rc REXdb_ID8430 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_818 REXdb_ID12929 Ty3/gypsy_CL079 (13) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + + 5 TGGTATCAGAGCA (tRNA-Met) - not tested Osativa204_820_rc REXdb_ID12542 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_821 REXdb_ID8418 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_822 REXdb_ID8410 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_823 REXdb_ID12519 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - + 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_825_rc REXdb_ID8434 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_827_rc REXdb_ID4516 Ty1/copia_CL103 (9) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_828_rc REXdb_ID9503 Ty3/gypsy_CL049 (22) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_829_rc REXdb_ID13706 Ty3/gypsy_CL594 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_83_rc REXdb_ID12564 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_830_rc REXdb_ID9186 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_832_rc REXdb_ID8354 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_833 REXdb_ID4771 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 4 - - not tested Osativa204_834 REXdb_ID8300 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_835_rc REXdb_ID12627 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_837_rc REXdb_ID9234 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGAAG (tRNA-Arg) - not tested Osativa204_839_rc REXdb_ID9232 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Osativa204_842 REXdb_ID3379 Ty1/copia_CL402 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 - - not tested Osativa204_845_rc REXdb_ID8293 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_846 REXdb_ID9226 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Osativa204_847 REXdb_ID4772 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_848 REXdb_ID12539 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_849_rc REXdb_ID9216 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_850 REXdb_ID9200 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_851_rc REXdb_ID2845 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Osativa204_852_rc REXdb_ID12528 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + - + 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_857 REXdb_ID13707 Ty3/gypsy_CL595 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_858_rc REXdb_ID8436 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_86_rc REXdb_ID8303 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_860_rc REXdb_ID12604 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + + 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_864 REXdb_ID9209 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_869 REXdb_ID12610 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + + + 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_87_rc REXdb_ID12529 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_872_rc REXdb_ID8444 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_873 REXdb_ID12634 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + + 5 TGGTATCAGAGCT (tRNA-Met) - not tested Osativa204_876_rc REXdb_ID8331 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_877 REXdb_ID8414 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGGTT (tRNA-Arg) - not tested Osativa204_878 REXdb_ID719 Ty1/copia_CL693 (1) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGACA (tRNA-?) - not tested Osativa204_879 REXdb_ID12565 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_880_rc REXdb_ID9679 Ty3/gypsy_CL094 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCAACCGTGGGGA (tRNA-Lys) - not tested Osativa204_882 REXdb_ID720 Ty1/copia_CL033 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Osativa204_885_rc REXdb_ID9707 Ty3/gypsy_CL159 (5) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Osativa204_886 REXdb_ID721 Ty1/copia_CL295 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_889_rc REXdb_ID9672 Ty3/gypsy_CL094 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCCA (tRNA-Val) - not tested Osativa204_890 REXdb_ID8405 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_892_rc REXdb_ID13535 Ty3/gypsy_CL320 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Osativa204_896 REXdb_ID4773 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - AAAAACCTGAT not tested Osativa204_897_rc REXdb_ID9213 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Osativa204_899 REXdb_ID8412 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_9_rc REXdb_ID7586 Ty3/gypsy_CL158 (5) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGTGACTCCGCTGG (tRNA-Arg) - not tested Osativa204_90_rc REXdb_ID12647 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_902 REXdb_ID12532 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_903_rc REXdb_ID9187 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Osativa204_904_rc REXdb_ID12628 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + + 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_905 REXdb_ID12617 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + + + 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_906_rc REXdb_ID12544 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_908 REXdb_ID12605 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + - + 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_912_rc REXdb_ID12631 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + - + 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Osativa204_914 REXdb_ID12629 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Osativa204_919_rc REXdb_ID11903 Ty3/gypsy_CL137 (6) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_923_rc REXdb_ID12654 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_924 REXdb_ID12573 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Osativa204_927 REXdb_ID12644 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Osativa204_93_rc REXdb_ID4774 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Osativa204_930_rc REXdb_ID12623 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + + 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_932_rc REXdb_ID12611 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + + 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_933 REXdb_ID12551 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_935_rc REXdb_ID12591 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_936 REXdb_ID12534 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_938 REXdb_ID12640 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + + 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_94_rc REXdb_ID11330 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Osativa204_942_rc REXdb_ID12584 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_945_rc REXdb_ID12618 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + + 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_947 REXdb_ID8459 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_948_rc REXdb_ID8330 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Osativa204_95_rc REXdb_ID12537 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_950 REXdb_ID12601 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + + + 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_954_rc REXdb_ID11343 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Osativa204_956_rc REXdb_ID8415 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Osativa204_957_rc REXdb_ID8384 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - + + not tested not tested 5 TGGCGCGCCAGGTAGGGGAT (tRNA-Arg) - not tested Osativa204_960 REXdb_ID9680 Ty3/gypsy_CL094 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + + + 5 TGGTGCCGACCGTGGGG (tRNA-Lys) - not tested Osativa204_962_rc REXdb_ID12588 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + + + 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_963_rc REXdb_ID12554 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_965 REXdb_ID12606 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + + + 5 TGGTATCAGAGCCAGGT (tRNA-Met) - not tested Osativa204_970 REXdb_ID8419 Ty3/gypsy_CL009 (177) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Osativa204_971_rc REXdb_ID12570 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Osativa204_972_rc REXdb_ID9516 Ty3/gypsy_CL049 (22) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - + 5 TGGTGCTCAAGGT (tRNA-Lys) - not tested Osativa204_974 REXdb_ID722 Ty1/copia_CL400 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Osativa204_976_rc REXdb_ID12649 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - + 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Osativa204_98 REXdb_ID11333 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Osativa204_982 REXdb_ID4517 Ty1/copia_CL103 (9) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_986 REXdb_ID4775 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTGAT not tested Osativa204_99_rc REXdb_ID12530 Ty3/gypsy_CL014 (142) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Osativa204_993_rc REXdb_ID9201 Ty3/gypsy_CL026 (59) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Osativa204_995_rc REXdb_ID4518 Ty1/copia_CL103 (9) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - + - + 5 TGGTATCAGAGCC (tRNA-Met) - not tested Osativa204_997_rc REXdb_ID13708 Ty3/gypsy_CL596 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATT (tRNA-?) - not tested Osativa204_998 REXdb_ID3380 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Pabies_1001_rc REXdb_ID13875 Ty3/gypsy_CL160 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Pabies_1007 REXdb_ID2651 Ty1/copia_CL073 (13) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 5 TGGTTTCAGAGCTA (tRNA-Met) - - Pabies_1049_rc REXdb_ID11633 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCCTGG (tRNA-Met) - not tested Pabies_1063_rc REXdb_ID3381 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Pabies_1069 REXdb_ID2652 Ty1/copia_CL073 (13) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 4 - - - Pabies_108 REXdb_ID3382 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - + - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pabies_1083_rc REXdb_ID11670 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 - - not tested Pabies_1087_rc REXdb_ID3383 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pabies_1091 REXdb_ID11665 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 4 - - not tested Pabies_1101_rc REXdb_ID13882 Ty3/gypsy_CL597 (1) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pabies_1111 REXdb_ID11645 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 4 - - not tested Pabies_113_rc REXdb_ID6813 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 5 TGGTGACTCCATTGGGGA (tRNA-Arg) - not tested Pabies_1157 REXdb_ID2653 Ty1/copia_CL044 (22) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 4 - - - Pabies_12 REXdb_ID6674 Ty3/gypsy_CL141 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Pabies_120 REXdb_ID3384 Ty1/copia_CL167 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Pabies_127_rc REXdb_ID3385 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATTAGAGCT (tRNA-Met) - not tested Pabies_130 REXdb_ID12932 Ty3/gypsy_CL089 (11) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - - - - - - - 5 TGGTATCATAGC (tRNA-Met) - not tested Pabies_137_rc REXdb_ID3386 Ty1/copia_CL167 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Pabies_138_rc REXdb_ID13856 Ty3/gypsy_CL084 (12) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pabies_14 REXdb_ID6675 Ty3/gypsy_CL141 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCATTGCCAGGGA (tRNA-Asp) - not tested Pabies_140_rc REXdb_ID12943 Ty3/gypsy_CL095 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Pabies_141_rc REXdb_ID3387 Ty1/copia_CL212 (5) Class_I::LTR::Ty1/copia::Gymco-IV + + + + + - - - - - - - 5 TGGTATGAGAGC (tRNA-?) - not tested Pabies_151_rc REXdb_ID3388 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Pabies_157 REXdb_ID6678 Ty3/gypsy_CL141 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGTCGTTGTCGGGGA (tRNA-Asp) - not tested Pabies_172 REXdb_ID3389 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pabies_194 REXdb_ID3390 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pabies_202 REXdb_ID11973 Ty3/gypsy_CL598 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 4 TGGTATCAGAGTCAGGATT (tRNA-Ile) - not tested Pabies_204 REXdb_ID2654 Ty1/copia_CL073 (13) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 5 TGGTATCAGAGCTAAG (tRNA-Ile) - - Pabies_214_rc REXdb_ID13863 Ty3/gypsy_CL084 (12) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pabies_230 REXdb_ID13220 Ty3/gypsy_CL085 (12) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Pabies_231_rc REXdb_ID2655 Ty1/copia_CL044 (22) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - - Pabies_232_rc REXdb_ID6829 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 5 TGGCGACTCCACTGGGGAA (tRNA-His) - not tested Pabies_237_rc REXdb_ID11932 Ty3/gypsy_CL231 (3) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pabies_24_rc REXdb_ID6759 Ty3/gypsy_CL599 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - + - - 5 - - not tested Pabies_241_rc REXdb_ID2656 Ty1/copia_CL044 (22) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - - Pabies_245 REXdb_ID6794 Ty3/gypsy_CL126 (7) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII + + + + + + - - - - - - 4 TGGCACTAGAAGGAGGGC (tRNA-Asn) - not tested Pabies_246_rc REXdb_ID3391 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pabies_248_rc REXdb_ID12933 Ty3/gypsy_CL089 (11) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + - - 5 TGGTATTAGAGG (tRNA-?) - not tested Pabies_251_rc REXdb_ID6819 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - + - - 5 TGGCGAATCCACTGGGGATC (tRNA-Arg) - not tested Pabies_261_rc REXdb_ID11646 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 - - not tested Pabies_262_rc REXdb_ID6817 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + - - - - + - - 5 TGGGGAACATTCC (tRNA-Pro) - not tested Pabies_264 REXdb_ID6801 Ty3/gypsy_CL175 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII + + + + + + - - - - - - 5 TGGCACCGTTGCTGGGGA (tRNA-Asp) - not tested Pabies_265_rc REXdb_ID6840 Ty3/gypsy_CL161 (5) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 5 TGGCGACCATACTGGGGA (tRNA-Arg) - not tested Pabies_266_rc REXdb_ID2657 Ty1/copia_CL044 (22) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - - Pabies_268_rc REXdb_ID6816 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Pabies_269_rc REXdb_ID6834 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII - + + + + + - - - - not tested not tested 5 TGGCAACCATACTGGGGA (tRNA-Arg) - not tested Pabies_270 REXdb_ID2658 Ty1/copia_CL073 (13) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 5 - - - Pabies_271 REXdb_ID11638 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGA (tRNA-Met) - not tested Pabies_278_rc REXdb_ID6845 Ty3/gypsy_CL232 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + - - - - - - - 4 TGGCGACCATAC (tRNA-?) - not tested Pabies_280_rc REXdb_ID13222 Ty3/gypsy_CL085 (12) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Pabies_281_rc REXdb_ID12939 Ty3/gypsy_CL089 (11) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGT (tRNA-Met) - not tested Pabies_285 REXdb_ID6805 Ty3/gypsy_CL176 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII + + + + + + - - - - - - 5 TGGCGCCATTACCGGGGA (tRNA-Asp) - not tested Pabies_289 REXdb_ID6842 Ty3/gypsy_CL161 (5) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - + + - 5 TGGCGACTCCACTGGGGAT (tRNA-Arg) - not tested Pabies_293_rc REXdb_ID6821 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 5 TGGCGACTCCACTGGGGAT (tRNA-Arg) - not tested Pabies_306 REXdb_ID6760 Ty3/gypsy_CL600 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGTCGTTGTCGGGGAA (tRNA-Asp) - not tested Pabies_315 REXdb_ID6841 Ty3/gypsy_CL161 (5) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Pabies_320_rc REXdb_ID2659 Ty1/copia_CL044 (22) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 5 TGGTATCAAAGCCA (tRNA-Met) - - Pabies_322_rc REXdb_ID12947 Ty3/gypsy_CL095 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Pabies_324 REXdb_ID2846 Ty1/copia_CL041 (22) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Pabies_328_rc REXdb_ID6833 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 5 TGGCGACTCCGCTGGGGATAGA (tRNA-Arg) - not tested Pabies_332 REXdb_ID3392 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAAC (tRNA-Met) - not tested Pabies_337_rc REXdb_ID6677 Ty3/gypsy_CL141 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGTCGGGGA (tRNA-Asp) - not tested Pabies_344 REXdb_ID6844 Ty3/gypsy_CL161 (5) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 5 TGGTGACTCCACTAGGGAT (tRNA-His) - not tested Pabies_348 REXdb_ID3393 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCACTTC (tRNA-?) - not tested Pabies_349_rc REXdb_ID11644 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAACCTG (tRNA-Met) - not tested Pabies_35_rc REXdb_ID11933 Ty3/gypsy_CL231 (3) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Pabies_353_rc REXdb_ID11671 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCATAGCG (tRNA-Met) - not tested Pabies_357 REXdb_ID2660 Ty1/copia_CL044 (22) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 5 TGGTATTAGAGCCA (tRNA-Met) - - Pabies_365_rc REXdb_ID2661 Ty1/copia_CL119 (8) Class_I::LTR::Ty1/copia::Gymco-II - + + + + - - - - - not tested not tested 5 TGGGCCCACACA (tRNA-?) - GGTTATGGGCCCACAC (tRNA-Met) Pabies_366_rc REXdb_ID11657 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAAAGCCTGG (tRNA-Met) - not tested Pabies_370_rc REXdb_ID3394 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Pabies_382_rc REXdb_ID6828 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - + - - 5 TGGCGACTCCGCTGGGGATC (tRNA-Arg) - not tested Pabies_387 REXdb_ID6786 Ty3/gypsy_CL115 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII + + + + + + - - - - - - 4 TGGCACCGTTGCCAGGGA (tRNA-Asp) - not tested Pabies_389_rc REXdb_ID11678 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - not tested not tested 5 - - not tested Pabies_39 REXdb_ID13224 Ty3/gypsy_CL085 (12) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Pabies_394_rc REXdb_ID11637 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGAACTTGTCT (tRNA-?) - not tested Pabies_395_rc REXdb_ID6788 Ty3/gypsy_CL115 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII + + + + + + - - - - - - 5 TGGCGCCGTTGACGGGGA (tRNA-Asp) - not tested Pabies_399 REXdb_ID11643 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - + - + 5 TGGTATCAGAGCCAGA (tRNA-Met) - not tested Pabies_402_rc REXdb_ID6820 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - + - - 5 TGGCAACTCCACTGGGGA (tRNA-Arg) - not tested Pabies_407 REXdb_ID6796 Ty3/gypsy_CL126 (7) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII + + + + + + - - - - - - 4 - - not tested Pabies_408_rc REXdb_ID6825 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 4 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Pabies_411 REXdb_ID6832 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 5 TGGTGACTCCACTGGGGA (tRNA-His) - not tested Pabies_417_rc REXdb_ID3395 Ty1/copia_CL167 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Pabies_42_rc REXdb_ID6822 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 5 TGGTGACTTCCC (tRNA-?) - not tested Pabies_423 REXdb_ID12945 Ty3/gypsy_CL095 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Pabies_430 REXdb_ID11934 Ty3/gypsy_CL231 (3) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGACGG (tRNA-Leu) - not tested Pabies_436_rc REXdb_ID12948 Ty3/gypsy_CL095 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 - - not tested Pabies_442_rc REXdb_ID2662 Ty1/copia_CL119 (8) Class_I::LTR::Ty1/copia::Gymco-II - + + + + - - - - - not tested not tested 5 TGGGCCCACACA (tRNA-?) - GGTTATGGGCCCACAC (tRNA-Met) Pabies_445_rc REXdb_ID6807 Ty3/gypsy_CL176 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII + + + + + + - - + - - - 4 TGGTGACCAACT (tRNA-Asn) - not tested Pabies_448_rc REXdb_ID12946 Ty3/gypsy_CL095 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCATAGCG (tRNA-Met) - not tested Pabies_449_rc REXdb_ID2663 Ty1/copia_CL044 (22) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 5 TGGTATCATAGCCA (tRNA-Met) - - Pabies_455 REXdb_ID6843 Ty3/gypsy_CL161 (5) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 5 TGGTGACCATAA (tRNA-?) - not tested Pabies_458 REXdb_ID3396 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pabies_462 REXdb_ID6846 Ty3/gypsy_CL232 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 5 TGGAGACCGTAC (tRNA-?) - not tested Pabies_467_rc REXdb_ID2664 Ty1/copia_CL073 (13) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 5 TGGAATCAGAGCCA (tRNA-Met) - - Pabies_470 REXdb_ID13865 Ty3/gypsy_CL084 (12) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Pabies_477 REXdb_ID13857 Ty3/gypsy_CL084 (12) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pabies_481_rc REXdb_ID12944 Ty3/gypsy_CL095 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Pabies_484_rc REXdb_ID3397 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCATAGC (tRNA-Met) - not tested Pabies_486 REXdb_ID2665 Ty1/copia_CL119 (8) Class_I::LTR::Ty1/copia::Gymco-II - + + + + - - - - - not tested not tested 5 TGGGCCCACACA (tRNA-?) - GGTTATGGGCCCACAC (tRNA-Met) Pabies_494 REXdb_ID3398 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pabies_520_rc REXdb_ID2637 Ty1/copia_CL403 (3) Class_I::LTR::Ty1/copia::Gymco-III + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Pabies_525 REXdb_ID2847 Ty1/copia_CL041 (22) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Pabies_528_rc REXdb_ID6836 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 5 TGGTGACTCCACTGGGGA (tRNA-His) - not tested Pabies_531 REXdb_ID2666 Ty1/copia_CL119 (8) Class_I::LTR::Ty1/copia::Gymco-II - + + + + - - - - - not tested not tested 5 TGGGCCCACAAC (tRNA-?) - GGTTATGGGCCCACAAC (tRNA-Met) Pabies_533 REXdb_ID5259 Ty1/copia_CL136 (7) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pabies_536 REXdb_ID2638 Ty1/copia_CL560 (2) Class_I::LTR::Ty1/copia::Gymco-I + + + + + - - - - - - - 5 TGGTATCAGAGCCACGTTTT (tRNA-Met) - not tested Pabies_538 REXdb_ID3399 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCATAGC (tRNA-Met) - not tested Pabies_54 REXdb_ID2667 Ty1/copia_CL073 (13) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - - Pabies_546 REXdb_ID13867 Ty3/gypsy_CL084 (12) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATC (tRNA-Met) - not tested Pabies_551_rc REXdb_ID12941 Ty3/gypsy_CL089 (11) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - + 5 TGGCGTCGTTGCCTGGGAT (tRNA-Asp) - not tested Pabies_556_rc REXdb_ID13223 Ty3/gypsy_CL085 (12) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAAAGA (tRNA-Met) - not tested Pabies_559 REXdb_ID11639 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCATAGCC (tRNA-Met) - not tested Pabies_584_rc REXdb_ID6848 Ty3/gypsy_CL233 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII - + + + + + - - - - not tested not tested 5 - - not tested Pabies_592_rc REXdb_ID6676 Ty3/gypsy_CL141 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCGTTGCCGGGGA (tRNA-Asp) - not tested Pabies_593 REXdb_ID12950 Ty3/gypsy_CL095 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Pabies_596 REXdb_ID2668 Ty1/copia_CL073 (13) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - - Pabies_60_rc REXdb_ID2669 Ty1/copia_CL119 (8) Class_I::LTR::Ty1/copia::Gymco-II - + + + + - - - - - not tested not tested 5 - - GGTTATGAGCCCACACC (tRNA-Met) Pabies_601_rc REXdb_ID11649 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Pabies_604 REXdb_ID6850 Ty3/gypsy_CL233 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Pabies_608_rc REXdb_ID11648 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Pabies_609 REXdb_ID12951 Ty3/gypsy_CL095 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Pabies_610_rc REXdb_ID3400 Ty1/copia_CL167 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Pabies_614 REXdb_ID6792 Ty3/gypsy_CL115 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII + + + + + + - - - - - - 5 - - not tested Pabies_622_rc REXdb_ID3401 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pabies_633 REXdb_ID6831 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 5 TGGCGACTCCACT (tRNA-Arg) - not tested Pabies_634 REXdb_ID3402 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Pabies_642 REXdb_ID12952 Ty3/gypsy_CL095 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pabies_648_rc REXdb_ID11650 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCCGG (tRNA-Met) - not tested Pabies_649_rc REXdb_ID12935 Ty3/gypsy_CL089 (11) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCAGGTTTCGA (tRNA-Met) - not tested Pabies_650 REXdb_ID6814 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 5 TGGCAACTCCACTGGGGATCA (tRNA-Arg) - not tested Pabies_656_rc REXdb_ID11634 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCCGG (tRNA-Met) - not tested Pabies_68 REXdb_ID3403 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Pabies_693 REXdb_ID6815 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 4 TGGTGACTTTAC (tRNA-?) - not tested Pabies_697 REXdb_ID2670 Ty1/copia_CL119 (8) Class_I::LTR::Ty1/copia::Gymco-II - + + + + - - - - - not tested not tested 5 TGGGCCCACACC (tRNA-?) - GGTTATGGGCCCACACC (tRNA-Met) Pabies_698 REXdb_ID2671 Ty1/copia_CL044 (22) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 5 - - - Pabies_699 REXdb_ID2672 Ty1/copia_CL044 (22) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 4 - - - Pabies_704_rc REXdb_ID6761 Ty3/gypsy_CL601 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 - - not tested Pabies_706 REXdb_ID2848 Ty1/copia_CL041 (22) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Pabies_707_rc REXdb_ID6791 Ty3/gypsy_CL115 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII + + + + + + - - - + - - 5 TGGCGCCGTTGCCGGGGAACGA (tRNA-Asp) - not tested Pabies_712_rc REXdb_ID12938 Ty3/gypsy_CL089 (11) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCTAGGTTTTGA (tRNA-Met) - not tested Pabies_713 REXdb_ID3404 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pabies_731_rc REXdb_ID2673 Ty1/copia_CL119 (8) Class_I::LTR::Ty1/copia::Gymco-II - + + + + - - - - - not tested not tested 5 TGGGCCCACACC (tRNA-?) - GGTTATGGGCCCACACC (tRNA-Met) Pabies_732 REXdb_ID3405 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCATAGC (tRNA-Met) - not tested Pabies_737 REXdb_ID3406 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pabies_739_rc REXdb_ID2674 Ty1/copia_CL044 (22) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 5 - - - Pabies_74_rc REXdb_ID6806 Ty3/gypsy_CL176 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII + + + + + + - - - - + - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Pabies_751_rc REXdb_ID2675 Ty1/copia_CL073 (13) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - - Pabies_753_rc REXdb_ID2676 Ty1/copia_CL119 (8) Class_I::LTR::Ty1/copia::Gymco-II - + + + + - - - - - not tested not tested 5 TGGGCCCACACA (tRNA-?) - GGTTATGGGCCCACAC (tRNA-Met) Pabies_756_rc REXdb_ID6679 Ty3/gypsy_CL141 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGTCGGGGA (tRNA-Asp) - not tested Pabies_759 REXdb_ID3407 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATTAGAGCTA (tRNA-Met) - not tested Pabies_77_rc REXdb_ID2677 Ty1/copia_CL044 (22) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 4 - - - Pabies_771 REXdb_ID13862 Ty3/gypsy_CL084 (12) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pabies_775_rc REXdb_ID6789 Ty3/gypsy_CL115 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII + + + + + + - - - - - - 4 TGGCGTCGTTGCCGGGGA (tRNA-Asp) - not tested Pabies_779 REXdb_ID6700 Ty3/gypsy_CL177 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGCTAAAGG (tRNA-?) - not tested Pabies_78 REXdb_ID11974 Ty3/gypsy_CL602 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 4 TGGTGGGAGGAGA (tRNA-Tyr) - not tested Pabies_788_rc REXdb_ID6849 Ty3/gypsy_CL233 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Pabies_789_rc REXdb_ID6835 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 5 TGGCGACTCCGCTGGGGATC (tRNA-Arg) - not tested Pabies_801_rc REXdb_ID2639 Ty1/copia_CL560 (2) Class_I::LTR::Ty1/copia::Gymco-I + + + + + - - - - - - - 5 TGGTATCAGAGCCACGTTTT (tRNA-Met) - not tested Pabies_81 REXdb_ID2678 Ty1/copia_CL044 (22) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - - Pabies_812 REXdb_ID11636 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Pabies_819 REXdb_ID3408 Ty1/copia_CL167 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Pabies_82_rc REXdb_ID13221 Ty3/gypsy_CL085 (12) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGC (tRNA-?) - not tested Pabies_824 REXdb_ID11975 Ty3/gypsy_CL603 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAAAGCCTGGTTTTGA (tRNA-Met) - not tested Pabies_827 REXdb_ID5260 Ty1/copia_CL136 (7) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAAC (tRNA-Met) - not tested Pabies_829 REXdb_ID11659 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Pabies_83 REXdb_ID6847 Ty3/gypsy_CL232 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 5 TGGCGACTCCATTGGGGA (tRNA-His) - not tested Pabies_831_rc REXdb_ID3409 Ty1/copia_CL167 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATTAGAGCA (tRNA-Met) - not tested Pabies_833_rc REXdb_ID3410 Ty1/copia_CL212 (5) Class_I::LTR::Ty1/copia::Gymco-IV + + + + + - - - - - - - 5 TGGTATCGAAGC (tRNA-?) - not tested Pabies_834 REXdb_ID12934 Ty3/gypsy_CL089 (11) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGATCCA (tRNA-Met) - not tested Pabies_84 REXdb_ID12937 Ty3/gypsy_CL089 (11) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay - + + + + - + - - - not tested not tested 5 TGGTATCAGAGCCAGGTTTCGA (tRNA-Met) - not tested Pabies_845_rc REXdb_ID12949 Ty3/gypsy_CL095 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Pabies_852_rc REXdb_ID6827 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 5 TGGCGACTCCGCTGGGGA (tRNA-Arg) - not tested Pabies_861 REXdb_ID11655 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAAAGCC (tRNA-Met) - not tested Pabies_864_rc REXdb_ID6795 Ty3/gypsy_CL126 (7) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII + + + + + + - - - - + - 4 TGGGTAACATAT (tRNA-?) - not tested Pabies_875 REXdb_ID11668 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCGAG (tRNA-Met) - not tested Pabies_876 REXdb_ID6803 Ty3/gypsy_CL175 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII + + + + + + - - + - - - 4 TGGCGCCGTTGTCGAGGA (tRNA-Asp) - not tested Pabies_877 REXdb_ID13077 Ty3/gypsy_CL321 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Pabies_891 REXdb_ID3411 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pabies_896 REXdb_ID3412 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAAGCTA (tRNA-Met) - not tested Pabies_9_rc REXdb_ID2680 Ty1/copia_CL073 (13) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 5 TGGAATCAGATCCA (tRNA-Met) - - Pabies_902_rc REXdb_ID3413 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pabies_905_rc REXdb_ID12936 Ty3/gypsy_CL089 (11) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCAGGTTTCGA (tRNA-Met) - not tested Pabies_919 REXdb_ID6804 Ty3/gypsy_CL175 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII + + + + + + - - + - - - 5 - - not tested Pabies_920 REXdb_ID3414 Ty1/copia_CL212 (5) Class_I::LTR::Ty1/copia::Gymco-IV + + + + + - - - - - - - 5 TGGTATTAGAGCGAGG (tRNA-Met) - not tested Pabies_946_rc REXdb_ID6787 Ty3/gypsy_CL115 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII - + + + + + - - - - not tested not tested 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Pabies_948_rc REXdb_ID6762 Ty3/gypsy_CL604 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCATCGTTGCTGGGGA (tRNA-Asp) - not tested Pabies_952_rc REXdb_ID11651 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 6 - - not tested Pabies_955 REXdb_ID11635 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCCTGGTT (tRNA-Met) - not tested Pabies_960 REXdb_ID11669 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 4 - - not tested Pabies_961_rc REXdb_ID13876 Ty3/gypsy_CL160 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 6 - - not tested Pabies_967_rc REXdb_ID2679 Ty1/copia_CL073 (13) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - - Pabies_98 REXdb_ID13859 Ty3/gypsy_CL084 (12) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Pabies_993 REXdb_ID13860 Ty3/gypsy_CL084 (12) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Pabies_999 REXdb_ID13878 Ty3/gypsy_CL160 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 6 - - not tested PetI1_ID72 REXdb_ID12030 Ty3/gypsy_CL322 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM - + + + + - - - - - not tested not tested not tested not tested not tested not tested PetI2_ID76 REXdb_ID12031 Ty3/gypsy_CL322 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - not tested not tested not tested not tested Pglauca_108_rc REXdb_ID11653 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGTCAGGATTT (tRNA-Ile) - not tested Pglauca_121_rc REXdb_ID11647 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Pglauca_125 REXdb_ID13877 Ty3/gypsy_CL160 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 6 - - not tested Pglauca_138 REXdb_ID11667 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Pglauca_142_rc REXdb_ID5261 Ty1/copia_CL136 (7) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Pglauca_158 REXdb_ID13078 Ty3/gypsy_CL321 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - not tested not tested 4 - - not tested Pglauca_162 REXdb_ID2640 Ty1/copia_CL561 (2) Class_I::LTR::Ty1/copia::Gymco-I - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Pglauca_167_rc REXdb_ID6802 Ty3/gypsy_CL175 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII + + + + + - - - - - - - 5 TGGCGCCATTGCCGGGGA (tRNA-Asp) - not tested Pglauca_182 REXdb_ID11674 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCTAGA (tRNA-Met) - not tested Pglauca_188 REXdb_ID11654 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAACCTG (tRNA-Met) - not tested Pglauca_193 REXdb_ID6798 Ty3/gypsy_CL126 (7) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII + + + + + + - - + - + - 5 - - not tested Pglauca_207_rc REXdb_ID2681 Ty1/copia_CL044 (22) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 4 - - - Pglauca_219_rc REXdb_ID13227 Ty3/gypsy_CL085 (12) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATC (tRNA-Met) - not tested Pglauca_222 REXdb_ID11675 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 4 - - not tested Pglauca_225_rc REXdb_ID2682 Ty1/copia_CL044 (22) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - - Pglauca_231 REXdb_ID13230 Ty3/gypsy_CL085 (12) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Pglauca_239 REXdb_ID13225 Ty3/gypsy_CL085 (12) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGAATCAGAGC (tRNA-Met) - not tested Pglauca_246_rc REXdb_ID6809 Ty3/gypsy_CL605 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII + + + + + + - - - - + - 5 - - not tested Pglauca_247 REXdb_ID13709 Ty3/gypsy_CL606 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATGAGAGCA (tRNA-Met) - not tested Pglauca_251_rc REXdb_ID6826 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 5 TGGCGACTCCACT (tRNA-Arg) - not tested Pglauca_255_rc REXdb_ID3415 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAAGCAA (tRNA-Ile) - not tested Pglauca_260 REXdb_ID6839 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + - - - - + - - 5 TGGCGACTCCACTGGGGAT (tRNA-Arg) - not tested Pglauca_272 REXdb_ID2683 Ty1/copia_CL073 (13) Class_I::LTR::Ty1/copia::Gymco-II - + + + + - - - - - not tested not tested 5 - - - Pglauca_273 REXdb_ID3416 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCATAGC (tRNA-Met) - not tested Pglauca_277_rc REXdb_ID13879 Ty3/gypsy_CL160 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 6 - - not tested Pglauca_281_rc REXdb_ID13710 Ty3/gypsy_CL607 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 4 - - not tested Pglauca_293_rc REXdb_ID6830 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 5 TGGCGACTCCACTGGGG (tRNA-Arg) - not tested Pglauca_299 REXdb_ID2684 Ty1/copia_CL044 (22) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - - Pglauca_303 REXdb_ID11641 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - + 4 - - not tested Pglauca_304_rc REXdb_ID3417 Ty1/copia_CL212 (5) Class_I::LTR::Ty1/copia::Gymco-IV + + + + + - - - - - - - 5 TGGTATCAGAGT (tRNA-Met) - not tested Pglauca_310 REXdb_ID11658 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Pglauca_321 REXdb_ID3418 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Pglauca_329_rc REXdb_ID2685 Ty1/copia_CL044 (22) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - not tested not tested 4 - - - Pglauca_330 REXdb_ID11664 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGGGAAAGAGAG (tRNA-Ser) - not tested Pglauca_341_rc REXdb_ID11640 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Pglauca_345_rc REXdb_ID11652 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Pglauca_348 REXdb_ID11679 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 4 TGGTATCAGAGCA (tRNA-Met) - not tested Pglauca_349_rc REXdb_ID13229 Ty3/gypsy_CL085 (12) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGAATTAGAGC (tRNA-?) - not tested Pglauca_353 REXdb_ID13861 Ty3/gypsy_CL084 (12) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 4 TGGTATCAAAGA (tRNA-Met) - not tested Pglauca_356_rc REXdb_ID6799 Ty3/gypsy_CL126 (7) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII + + + + + + - - - - + - 5 TGGCGCTAGAAGGAGGGC (tRNA-Asn) - not tested Pglauca_359 REXdb_ID11660 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGT (tRNA-Met) - not tested Pglauca_361 REXdb_ID6793 Ty3/gypsy_CL115 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII + + + + + + - - - - - - 5 - - not tested Pglauca_365_rc REXdb_ID3419 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAAGCAA (tRNA-Ile) - not tested Pglauca_374 REXdb_ID11672 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCATAGCG (tRNA-Met) - not tested Pglauca_375 REXdb_ID6800 Ty3/gypsy_CL126 (7) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII + + + + + + - - - - - - 4 TGGTTAGACTCT (tRNA-?) - not tested Pglauca_378_rc REXdb_ID11666 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pglauca_386_rc REXdb_ID11662 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 - - not tested Pglauca_388_rc REXdb_ID6838 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 5 TGGCGAATCCACTGGGGA (tRNA-Arg) - not tested Pglauca_399 REXdb_ID11661 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 4 - - not tested Pglauca_400_rc REXdb_ID11656 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCGAGGTT (tRNA-Met) - not tested Pglauca_403 REXdb_ID11676 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 4 - - not tested Pglauca_410_rc REXdb_ID11677 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 4 - - not tested Pglauca_412_rc REXdb_ID2641 Ty1/copia_CL561 (2) Class_I::LTR::Ty1/copia::Gymco-I + + + + + - - - - - - - 5 TGGTATCATAGCCA (tRNA-Met) - not tested Pglauca_413 REXdb_ID2686 Ty1/copia_CL044 (22) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - - Pglauca_415 REXdb_ID11976 Ty3/gypsy_CL608 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 4 TGGTATCAGAGCG (tRNA-Met) - not tested Pglauca_416_rc REXdb_ID13711 Ty3/gypsy_CL609 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAAAGCA (tRNA-Ile) - not tested Pglauca_429_rc REXdb_ID6823 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 5 TGGCGACTCCACTGGGGAAT (tRNA-His) - not tested Pglauca_435 REXdb_ID12940 Ty3/gypsy_CL089 (11) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - - - - - - - 4 TGGTATCAGAGCCAGGTTTCGA (tRNA-Met) - not tested Pglauca_436_rc REXdb_ID6824 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - + - - 5 TGGCGAATCCACTGGGGA (tRNA-Arg) - not tested Pglauca_437 REXdb_ID13228 Ty3/gypsy_CL085 (12) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAAATC (tRNA-Ile) - not tested Pglauca_438 REXdb_ID11673 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 4 - - not tested Pglauca_441_rc REXdb_ID13231 Ty3/gypsy_CL085 (12) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATTAGATC (tRNA-Ile) - not tested Pglauca_442 REXdb_ID6818 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Pglauca_445_rc REXdb_ID13094 Ty3/gypsy_CL610 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 - - not tested Pglauca_450 REXdb_ID2687 Ty1/copia_CL044 (22) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - not tested not tested - - 5 TGGTATCAGAGCCA (tRNA-Met) - - Pglauca_461 REXdb_ID6810 Ty3/gypsy_CL611 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII + + + + + + - - - - - - 5 - - not tested Pglauca_477_rc REXdb_ID3420 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pglauca_486 REXdb_ID11642 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pglauca_487_rc REXdb_ID12942 Ty3/gypsy_CL089 (11) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 TGGTATCAGAGCCAGGTTTCGA (tRNA-Met) - not tested Pglauca_498 REXdb_ID6763 Ty3/gypsy_CL612 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 - - not tested Pglauca_509_rc REXdb_ID2688 Ty1/copia_CL073 (13) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 4 - - - Pglauca_515 REXdb_ID2689 Ty1/copia_CL073 (13) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 5 TGGTTTCAGAGC (tRNA-Met) - - Pglauca_527 REXdb_ID2690 Ty1/copia_CL044 (22) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 5 TGGTATCATAGCCA (tRNA-Met) - - Pglauca_528 REXdb_ID13866 Ty3/gypsy_CL084 (12) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pglauca_529_rc REXdb_ID6837 Ty3/gypsy_CL046 (27) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - - - 5 TGGCAACTCCACTGGGGAT (tRNA-Arg) - not tested Pglauca_535_rc REXdb_ID2691 Ty1/copia_CL044 (22) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - - Pglauca_536_rc REXdb_ID2692 Ty1/copia_CL044 (22) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 5 TGGTATCAGAGCCACGT (tRNA-Met) - - Pglauca_537_rc REXdb_ID3421 Ty1/copia_CL212 (5) Class_I::LTR::Ty1/copia::Gymco-IV + + + + + - - - - - - - 5 TGGTATCAGAGCGAGGTT (tRNA-Met) - not tested Pglauca_547 REXdb_ID6797 Ty3/gypsy_CL126 (7) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII + + + + + + - - + - - - 5 TGGCGCTAGAAGGAGGGC (tRNA-Asn) - not tested Pglauca_55_rc REXdb_ID3422 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATTAGAGCT (tRNA-Met) - not tested Pglauca_550_rc REXdb_ID13864 Ty3/gypsy_CL084 (12) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGTATTCGATCC (tRNA-Met) - not tested Pglauca_62 REXdb_ID11680 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 4 - - not tested Pglauca_64 REXdb_ID6790 Ty3/gypsy_CL115 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII + + + + + + - - - - - - 4 - - not tested Pglauca_72 REXdb_ID13858 Ty3/gypsy_CL084 (12) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGAGGAATTGG (tRNA-Tyr) - not tested Pglauca_77 REXdb_ID3423 Ty1/copia_CL023 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pglauca_87_rc REXdb_ID13226 Ty3/gypsy_CL085 (12) Class_I::LTR::Ty3/gypsy::chromovirus::Reina - + + + + - + - - - not tested not tested 5 TGGTATCAGAGG (tRNA-Met) - not tested Pglauca_88 REXdb_ID2693 Ty1/copia_CL044 (22) Class_I::LTR::Ty1/copia::Gymco-II + + + + + - - - - - - - 4 TGGTATCAGAGCCA (tRNA-Met) - - Pglauca_89_rc REXdb_ID11663 Ty3/gypsy_CL034 (48) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCTAGA (tRNA-Met) - not tested Pglauca_99_rc REXdb_ID6808 Ty3/gypsy_CL176 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII + + + + + + - - + - + - 4 - - not tested Phallii274_1 REXdb_ID9637 Ty3/gypsy_CL080 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Phallii274_1004_rc REXdb_ID11355 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Phallii274_1005_rc REXdb_ID12331 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 - - not tested Phallii274_1006 REXdb_ID13294 Ty3/gypsy_CL125 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACGAT (tRNA-?) - not tested Phallii274_101 REXdb_ID12370 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Phallii274_1010_rc REXdb_ID13131 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACGAT (tRNA-?) - not tested Phallii274_1012 REXdb_ID11381 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGATT (tRNA-Met) - not tested Phallii274_1014 REXdb_ID13295 Ty3/gypsy_CL125 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACGAT (tRNA-?) - not tested Phallii274_104_rc REXdb_ID723 Ty1/copia_CL120 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCATGAG (tRNA-?) - not tested Phallii274_107 REXdb_ID9638 Ty3/gypsy_CL080 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCACCAGGTAGGGG (tRNA-Arg) - not tested Phallii274_108 REXdb_ID724 Ty1/copia_CL120 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACGAG (tRNA-?) - not tested Phallii274_111_rc REXdb_ID2849 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGGC (tRNA-Met) - not tested Phallii274_113 REXdb_ID725 Ty1/copia_CL080 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Phallii274_115_rc REXdb_ID726 Ty1/copia_CL120 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACGAG (tRNA-?) - not tested Phallii274_116 REXdb_ID8604 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCTAGGTAGGGG (tRNA-Arg) - not tested Phallii274_117_rc REXdb_ID7401 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCTAG (tRNA-?) - not tested Phallii274_12_rc REXdb_ID12873 Ty3/gypsy_CL058 (19) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Phallii274_120 REXdb_ID2850 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - + 5 TGGTATCAGTCG (tRNA-?) - not tested Phallii274_122_rc REXdb_ID2851 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGATT (tRNA-Met) - not tested Phallii274_127_rc REXdb_ID2852 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGTAA (tRNA-?) - not tested Phallii274_132 REXdb_ID4519 Ty1/copia_CL213 (5) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGT (tRNA-Met) - not tested Phallii274_133 REXdb_ID8612 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Phallii274_136 REXdb_ID8624 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGAGCTCGA (tRNA-Thr) - not tested Phallii274_139_rc REXdb_ID9643 Ty3/gypsy_CL080 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Phallii274_140_rc REXdb_ID8609 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCACCAGGTAGGGG (tRNA-Arg) - not tested Phallii274_141_rc REXdb_ID8686 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Phallii274_147_rc REXdb_ID7412 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Phallii274_15 REXdb_ID8631 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - + not tested not tested 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Phallii274_150_rc REXdb_ID12345 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Phallii274_152_rc REXdb_ID13135 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGCTA (tRNA-?) - not tested Phallii274_153 REXdb_ID7423 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCATGCCCGGTGGGAC (tRNA-Arg) - not tested Phallii274_154_rc REXdb_ID8643 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - + not tested not tested 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Phallii274_155_rc REXdb_ID4776 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 6 - CCAAAAACCTTATT not tested Phallii274_156 REXdb_ID7436 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 - - not tested Phallii274_158 REXdb_ID12878 Ty3/gypsy_CL058 (19) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Phallii274_160 REXdb_ID7450 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Phallii274_161_rc REXdb_ID7421 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 4 - - not tested Phallii274_167_rc REXdb_ID727 Ty1/copia_CL137 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Phallii274_168_rc REXdb_ID12876 Ty3/gypsy_CL058 (19) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Phallii274_171 REXdb_ID7451 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACTC (tRNA-Arg) - not tested Phallii274_172_rc REXdb_ID12875 Ty3/gypsy_CL058 (19) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Phallii274_177_rc REXdb_ID2853 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGTTT (tRNA-?) - not tested Phallii274_178 REXdb_ID13148 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Phallii274_179_rc REXdb_ID2854 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGTAG (tRNA-?) - not tested Phallii274_18_rc REXdb_ID9647 Ty3/gypsy_CL080 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGTGTGCCAGA (tRNA-?) - not tested Phallii274_182_rc REXdb_ID8673 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Phallii274_183_rc REXdb_ID8656 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGTGCCAGGTAGGGG (tRNA-Arg) - not tested Phallii274_188 REXdb_ID2855 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - + - 5 TGGTATCAGTAA (tRNA-?) - not tested Phallii274_195_rc REXdb_ID12759 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCAGGTT (tRNA-Met) - not tested Phallii274_198 REXdb_ID12367 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Phallii274_201_rc REXdb_ID8659 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Phallii274_203 REXdb_ID5262 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCTAGAT (tRNA-Met) - not tested Phallii274_205 REXdb_ID8685 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGG (tRNA-Arg) - not tested Phallii274_207_rc REXdb_ID12343 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Phallii274_210_rc REXdb_ID8668 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 4 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Phallii274_212 REXdb_ID7434 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Phallii274_213 REXdb_ID4520 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTGTCAGAGCT (tRNA-Val) - not tested Phallii274_215_rc REXdb_ID8662 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCGCCAGGTAGGGGAA (tRNA-Arg) - not tested Phallii274_223 REXdb_ID8613 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Phallii274_225 REXdb_ID7406 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Phallii274_227_rc REXdb_ID728 Ty1/copia_CL168 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCCTCCC (tRNA-?) - not tested Phallii274_229 REXdb_ID4521 Ty1/copia_CL213 (5) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Phallii274_230_rc REXdb_ID12376 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Phallii274_233 REXdb_ID13127 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGGTG (tRNA-?) - not tested Phallii274_234_rc REXdb_ID13061 Ty3/gypsy_CL234 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + + - 4 - - not tested Phallii274_235 REXdb_ID729 Ty1/copia_CL080 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Phallii274_236 REXdb_ID3424 Ty1/copia_CL404 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCGGAGC (tRNA-?) - not tested Phallii274_237 REXdb_ID8636 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Phallii274_238_rc REXdb_ID2563 Ty1/copia_CL104 (9) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - - Phallii274_239_rc REXdb_ID9644 Ty3/gypsy_CL080 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - + + not tested not tested 5 TGGCGCGCCAGGTGGGGG (tRNA-Arg) - not tested Phallii274_24_rc REXdb_ID12383 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Phallii274_240 REXdb_ID730 Ty1/copia_CL056 (16) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Phallii274_242_rc REXdb_ID12358 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 - - not tested Phallii274_243_rc REXdb_ID8679 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Phallii274_246_rc REXdb_ID7409 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Phallii274_248_rc REXdb_ID8665 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCACCAGGTAGGGG (tRNA-Arg) - not tested Phallii274_250 REXdb_ID8669 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 - - not tested Phallii274_251 REXdb_ID8622 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - not tested not tested - - 5 TGGTGCGCCAGGAAGGG (tRNA-Arg) - not tested Phallii274_252 REXdb_ID3425 Ty1/copia_CL562 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Phallii274_255 REXdb_ID13020 Ty3/gypsy_CL142 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Phallii274_256_rc REXdb_ID13118 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACGGT (tRNA-?) - not tested Phallii274_257_rc REXdb_ID12888 Ty3/gypsy_CL058 (19) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - not tested not tested - - 4 - - not tested Phallii274_258_rc REXdb_ID12346 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Phallii274_26 REXdb_ID2856 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGTCG (tRNA-?) - not tested Phallii274_260 REXdb_ID8616 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCACGCCAGGTAGGGGT (tRNA-Arg) - not tested Phallii274_262 REXdb_ID4522 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCAAGGTT (tRNA-Met) - not tested Phallii274_264_rc REXdb_ID13147 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGGAA (tRNA-Phe) - not tested Phallii274_267_rc REXdb_ID8653 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Phallii274_268_rc REXdb_ID4523 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 - - not tested Phallii274_272 REXdb_ID2857 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCCGTCG (tRNA-?) - not tested Phallii274_274 REXdb_ID731 Ty1/copia_CL080 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Phallii274_275_rc REXdb_ID4524 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCAAGGTT (tRNA-Met) - not tested Phallii274_279 REXdb_ID7447 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCAGTGGGACTT (tRNA-Arg) - not tested Phallii274_285 REXdb_ID4525 Ty1/copia_CL169 (6) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Phallii274_287_rc REXdb_ID12347 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Phallii274_288_rc REXdb_ID8645 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCACCAGGTAGGGG (tRNA-Arg) - not tested Phallii274_289_rc REXdb_ID3426 Ty1/copia_CL563 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGGGCTAAG (tRNA-Met) - not tested Phallii274_29 REXdb_ID4526 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - + - not tested not tested 5 TGGTATCAGAGCGAG (tRNA-Met) - not tested Phallii274_30 REXdb_ID3427 Ty1/copia_CL564 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - not tested Phallii274_303_rc REXdb_ID12374 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 4 - - not tested Phallii274_305 REXdb_ID2858 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGTTG (tRNA-?) - not tested Phallii274_306 REXdb_ID7416 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre - + + + + + - - - - not tested not tested 5 TGGCATGCCCAGTGGGAC (tRNA-Arg) - not tested Phallii274_308 REXdb_ID8641 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Phallii274_309 REXdb_ID7408 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Phallii274_31_rc REXdb_ID2859 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGTAG (tRNA-?) - not tested Phallii274_310_rc REXdb_ID12333 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 4 - - not tested Phallii274_312_rc REXdb_ID9645 Ty3/gypsy_CL080 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGAGG (tRNA-Arg) TTTGGCGCGCC not tested Phallii274_314_rc REXdb_ID7431 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 - - not tested Phallii274_316_rc REXdb_ID4527 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCAGGTTC (tRNA-Met) - not tested Phallii274_317_rc REXdb_ID12884 Ty3/gypsy_CL058 (19) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Phallii274_323_rc REXdb_ID12332 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Phallii274_325_rc REXdb_ID8606 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Phallii274_329_rc REXdb_ID8621 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGTGCCAGA (tRNA-?) - not tested Phallii274_331 REXdb_ID7419 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGTCCAG (tRNA-?) - not tested Phallii274_332_rc REXdb_ID8680 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Phallii274_34 REXdb_ID4528 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCGAGGTTT (tRNA-Met) - not tested Phallii274_341_rc REXdb_ID12373 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Phallii274_342 REXdb_ID8637 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Phallii274_343_rc REXdb_ID3428 Ty1/copia_CL565 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Phallii274_347 REXdb_ID13144 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCTCAGT (tRNA-?) - not tested Phallii274_35 REXdb_ID3429 Ty1/copia_CL566 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCGGG (tRNA-Met) - not tested Phallii274_350_rc REXdb_ID3430 Ty1/copia_CL567 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCACCAGAGC (tRNA-?) - not tested Phallii274_351 REXdb_ID2860 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Phallii274_356 REXdb_ID12877 Ty3/gypsy_CL058 (19) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay - + + + + - + - - - not tested not tested 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Phallii274_358_rc REXdb_ID8695 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Phallii274_359 REXdb_ID3431 Ty1/copia_CL694 (1) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTACCGGAGC (tRNA-?) - not tested Phallii274_36 REXdb_ID9769 Ty3/gypsy_CL613 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Phallii274_361 REXdb_ID2861 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGTCG (tRNA-?) - not tested Phallii274_362_rc REXdb_ID8617 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Phallii274_364 REXdb_ID2862 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGTTT (tRNA-?) - not tested Phallii274_366_rc REXdb_ID8610 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGAA (tRNA-Arg) - not tested Phallii274_369_rc REXdb_ID4529 Ty1/copia_CL213 (5) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGTCTGGTTTCT (tRNA-Met) - not tested Phallii274_371_rc REXdb_ID13095 Ty3/gypsy_CL614 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Phallii274_372_rc REXdb_ID732 Ty1/copia_CL568 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGACG (tRNA-?) - not tested Phallii274_374 REXdb_ID13712 Ty3/gypsy_CL615 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina - + + + + - + - - - not tested not tested 5 TGGTATCACGAT (tRNA-?) - not tested Phallii274_376_rc REXdb_ID2863 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGTCG (tRNA-?) - not tested Phallii274_377 REXdb_ID8646 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Phallii274_378 REXdb_ID8696 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Phallii274_379_rc REXdb_ID11342 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Phallii274_38 REXdb_ID12789 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 5 TGGTATCAGAGCGAGGTT (tRNA-Met) - not tested Phallii274_381 REXdb_ID4530 Ty1/copia_CL213 (5) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Phallii274_382 REXdb_ID7424 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Phallii274_384 REXdb_ID12366 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Phallii274_386_rc REXdb_ID12372 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Phallii274_388_rc REXdb_ID12362 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Phallii274_390 REXdb_ID733 Ty1/copia_CL695 (1) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Phallii274_393 REXdb_ID8605 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Phallii274_395 REXdb_ID8608 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGTGCCAGGTAGGGG (tRNA-Arg) - not tested Phallii274_398 REXdb_ID12371 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Phallii274_4_rc REXdb_ID3433 Ty1/copia_CL565 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Phallii274_404_rc REXdb_ID2864 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGACA (tRNA-?) - not tested Phallii274_407_rc REXdb_ID8607 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Phallii274_409_rc REXdb_ID7407 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Phallii274_41 REXdb_ID7414 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCTCAG (tRNA-?) - not tested Phallii274_410 REXdb_ID13296 Ty3/gypsy_CL125 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Phallii274_416_rc REXdb_ID8650 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Phallii274_418 REXdb_ID2865 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGATGC (tRNA-Met) - not tested Phallii274_422_rc REXdb_ID12349 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Phallii274_424 REXdb_ID2866 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - + - 4 - - not tested Phallii274_426 REXdb_ID7418 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Phallii274_428_rc REXdb_ID12336 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay - + + + + - + - - - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Phallii274_429 REXdb_ID4531 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Phallii274_430 REXdb_ID9641 Ty3/gypsy_CL080 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Phallii274_435 REXdb_ID12353 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Phallii274_441_rc REXdb_ID4777 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - - not tested Phallii274_444 REXdb_ID8638 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - - not tested not tested 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Phallii274_445_rc REXdb_ID8663 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Phallii274_446_rc REXdb_ID4532 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCGAGGTT (tRNA-Met) - not tested Phallii274_448 REXdb_ID7444 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Phallii274_45 REXdb_ID7403 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Phallii274_450_rc REXdb_ID8697 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Phallii274_451 REXdb_ID12369 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Phallii274_453 REXdb_ID8614 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGATAGGGG (tRNA-Arg) - not tested Phallii274_454 REXdb_ID4533 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Phallii274_462_rc REXdb_ID8676 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - + not tested not tested 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Phallii274_464_rc REXdb_ID7405 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCGCAG (tRNA-?) - not tested Phallii274_466_rc REXdb_ID734 Ty1/copia_CL040 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGATGC (tRNA-Met) - not tested Phallii274_467_rc REXdb_ID735 Ty1/copia_CL040 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACAGA (tRNA-?) - not tested Phallii274_47 REXdb_ID8687 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCTAGGTAGGGGG (tRNA-Arg) - not tested Phallii274_470 REXdb_ID736 Ty1/copia_CL569 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Phallii274_472 REXdb_ID8677 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - not tested not tested 5 TGGCGCGCCAGGTAGAGG (tRNA-Arg) - not tested Phallii274_475 REXdb_ID737 Ty1/copia_CL040 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACAAA (tRNA-?) - not tested Phallii274_480 REXdb_ID4534 Ty1/copia_CL169 (6) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGAC (tRNA-Met) - not tested Phallii274_484_rc REXdb_ID738 Ty1/copia_CL569 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Phallii274_485_rc REXdb_ID8639 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Phallii274_489_rc REXdb_ID8698 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCCACG (tRNA-?) - not tested Phallii274_490_rc REXdb_ID11363 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Phallii274_491_rc REXdb_ID8611 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGAA (tRNA-Arg) - not tested Phallii274_495_rc REXdb_ID8651 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCACACCAGGTAGG (tRNA-Arg) - not tested Phallii274_498_rc REXdb_ID8647 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Phallii274_499 REXdb_ID3432 Ty1/copia_CL570 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Phallii274_500 REXdb_ID8632 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Phallii274_502 REXdb_ID12350 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 - - not tested Phallii274_504 REXdb_ID3434 Ty1/copia_CL138 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Phallii274_507 REXdb_ID2867 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTAGCAGACG (tRNA-?) - not tested Phallii274_509_rc REXdb_ID2868 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGACG (tRNA-?) - not tested Phallii274_51 REXdb_ID12341 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + + - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Phallii274_517 REXdb_ID12885 Ty3/gypsy_CL058 (19) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Phallii274_524_rc REXdb_ID7417 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCGATGGGAC (tRNA-Arg) - not tested Phallii274_527_rc REXdb_ID9649 Ty3/gypsy_CL080 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCACCAGGTAGGGG (tRNA-Arg) - not tested Phallii274_530 REXdb_ID8681 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Phallii274_531_rc REXdb_ID2869 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 4 - - not tested Phallii274_533 REXdb_ID2870 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros - + + + + - - - - - not tested not tested 5 TGGTATCAGTAG (tRNA-?) - not tested Phallii274_536 REXdb_ID8700 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGTCAGGTAGGGGT (tRNA-Arg) - not tested Phallii274_538 REXdb_ID8693 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGA (tRNA-Arg) - not tested Phallii274_539_rc REXdb_ID8703 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Phallii274_54_rc REXdb_ID8633 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Phallii274_541 REXdb_ID8704 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGATC (tRNA-Arg) - not tested Phallii274_543 REXdb_ID7410 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Phallii274_544 REXdb_ID8666 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Phallii274_548_rc REXdb_ID8642 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Phallii274_549_rc REXdb_ID12874 Ty3/gypsy_CL058 (19) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 4 TGGTATCAGAGCCG (tRNA-Met) - not tested Phallii274_551 REXdb_ID8683 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Phallii274_555 REXdb_ID8670 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 4 - - not tested Phallii274_556_rc REXdb_ID3435 Ty1/copia_CL570 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Phallii274_557 REXdb_ID12363 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 - - not tested Phallii274_56 REXdb_ID4535 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCAAGGTT (tRNA-Met) - not tested Phallii274_560 REXdb_ID2871 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGTCG (tRNA-?) - not tested Phallii274_563 REXdb_ID739 Ty1/copia_CL120 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACGAG (tRNA-?) - not tested Phallii274_570_rc REXdb_ID12879 Ty3/gypsy_CL058 (19) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 - - not tested Phallii274_572_rc REXdb_ID12761 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Phallii274_576_rc REXdb_ID7427 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Phallii274_578 REXdb_ID13141 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCCGGTT (tRNA-?) - not tested Phallii274_58 REXdb_ID11346 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Phallii274_581 REXdb_ID12342 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCGGAGC (tRNA-Met) - not tested Phallii274_584_rc REXdb_ID8701 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGT (tRNA-Arg) - not tested Phallii274_587 REXdb_ID4536 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCGAGGTT (tRNA-Met) - not tested Phallii274_588 REXdb_ID12337 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 - - not tested Phallii274_589 REXdb_ID12382 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 5 TGGAGATGTGAAG (tRNA-Undet) - not tested Phallii274_59_rc REXdb_ID4537 Ty1/copia_CL213 (5) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 6 - - not tested Phallii274_591_rc REXdb_ID740 Ty1/copia_CL040 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACCGC (tRNA-?) - not tested Phallii274_594 REXdb_ID8652 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Phallii274_596_rc REXdb_ID8682 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Phallii274_597 REXdb_ID3436 Ty1/copia_CL559 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Phallii274_598_rc REXdb_ID8699 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCACGCCAGGTAGGGG (tRNA-Arg) - not tested Phallii274_6_rc REXdb_ID4540 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGGGCC (tRNA-Met) - not tested Phallii274_61_rc REXdb_ID2872 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGTTT (tRNA-?) - not tested Phallii274_610 REXdb_ID4538 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCAAGGTT (tRNA-Met) - not tested Phallii274_614_rc REXdb_ID8657 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGAGCTCGA (tRNA-Thr) - not tested Phallii274_616_rc REXdb_ID8674 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Phallii274_617 REXdb_ID4539 Ty1/copia_CL169 (6) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - + - not tested not tested 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Phallii274_619 REXdb_ID8671 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Phallii274_62_rc REXdb_ID3437 Ty1/copia_CL405 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Phallii274_623 REXdb_ID12348 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Phallii274_629_rc REXdb_ID12351 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Phallii274_632 REXdb_ID12335 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATTAGAGT (tRNA-?) - not tested Phallii274_634 REXdb_ID12364 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 4 - - not tested Phallii274_635_rc REXdb_ID12357 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Phallii274_636 REXdb_ID741 Ty1/copia_CL696 (1) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Phallii274_638_rc REXdb_ID3438 Ty1/copia_CL571 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Phallii274_639 REXdb_ID3439 Ty1/copia_CL406 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Phallii274_64 REXdb_ID2873 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGTTA (tRNA-?) - not tested Phallii274_641 REXdb_ID12386 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 - - not tested Phallii274_643_rc REXdb_ID8689 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Phallii274_645 REXdb_ID12379 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGCGC (tRNA-?) - not tested Phallii274_648 REXdb_ID2874 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Phallii274_649 REXdb_ID8654 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Phallii274_653 REXdb_ID8694 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Phallii274_656 REXdb_ID8644 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 - - not tested Phallii274_660_rc REXdb_ID12338 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 5 TGGTATTAGAGCT (tRNA-Met) - not tested Phallii274_668 REXdb_ID2875 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGTCG (tRNA-?) - not tested Phallii274_669_rc REXdb_ID3440 Ty1/copia_CL564 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCGG (tRNA-Met) - not tested Phallii274_67_rc REXdb_ID8660 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 - - not tested Phallii274_670_rc REXdb_ID3441 Ty1/copia_CL138 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Phallii274_671 REXdb_ID2876 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Phallii274_673 REXdb_ID2877 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros - + + + + - - - - - not tested not tested 5 TGGTATCAGTCG (tRNA-?) - not tested Phallii274_676_rc REXdb_ID11428 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGA (tRNA-Met) - not tested Phallii274_677_rc REXdb_ID11380 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGTTA (tRNA-?) - not tested Phallii274_679 REXdb_ID8664 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 4 - - not tested Phallii274_68 REXdb_ID3442 Ty1/copia_CL298 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Phallii274_681 REXdb_ID8690 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGTCAGGTAGGGG (tRNA-Arg) - not tested Phallii274_685 REXdb_ID742 Ty1/copia_CL168 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCATCCC (tRNA-?) - not tested Phallii274_687 REXdb_ID8675 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - + - - 5 - - not tested Phallii274_689_rc REXdb_ID9646 Ty3/gypsy_CL080 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGAT (tRNA-Arg) - not tested Phallii274_69_rc REXdb_ID7411 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + - - - - + - - 5 TGGCACGCCCAGTGG (tRNA-Arg) - not tested Phallii274_691 REXdb_ID7437 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGAACGCCCGG (tRNA-?) - not tested Phallii274_697 REXdb_ID12384 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 TGGTATTAGAGCTA (tRNA-Met) - not tested Phallii274_700_rc REXdb_ID8629 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGATAGGGG (tRNA-Arg) - not tested Phallii274_705 REXdb_ID7452 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGTACGCCCGA (tRNA-?) - not tested Phallii274_707_rc REXdb_ID4778 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTAATT not tested Phallii274_709_rc REXdb_ID743 Ty1/copia_CL120 (8) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGAC (tRNA-Met) - not tested Phallii274_71 REXdb_ID2878 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 - - not tested Phallii274_710 REXdb_ID12355 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAAC (tRNA-Met) - not tested Phallii274_711_rc REXdb_ID12882 Ty3/gypsy_CL058 (19) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 5 TGGTATTAGAGCC (tRNA-Met) - not tested Phallii274_713_rc REXdb_ID2879 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGTCG (tRNA-?) - not tested Phallii274_714_rc REXdb_ID7428 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Phallii274_715_rc REXdb_ID12377 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 - - not tested Phallii274_717_rc REXdb_ID12375 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 - - not tested Phallii274_722 REXdb_ID8655 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Phallii274_730_rc REXdb_ID11349 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Phallii274_735_rc REXdb_ID12340 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Phallii274_736_rc REXdb_ID12360 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 - - not tested Phallii274_738_rc REXdb_ID12887 Ty3/gypsy_CL058 (19) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - not tested not tested 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Phallii274_74 REXdb_ID744 Ty1/copia_CL137 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGAATCAGAGC (tRNA-Met) - not tested Phallii274_743 REXdb_ID8625 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGACAGG (tRNA-?) - not tested Phallii274_748_rc REXdb_ID12380 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 - - not tested Phallii274_749_rc REXdb_ID12339 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Phallii274_759 REXdb_ID8702 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Phallii274_763 REXdb_ID12368 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Phallii274_764_rc REXdb_ID8634 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - + + 5 TGGCACGCCAGGTAGGGG (tRNA-Arg) - not tested Phallii274_766 REXdb_ID8667 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Phallii274_77 REXdb_ID8627 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGTGCTAGGTAGGGGT (tRNA-Undet) - not tested Phallii274_773 REXdb_ID12760 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Phallii274_775 REXdb_ID7415 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + - - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Phallii274_777_rc REXdb_ID7439 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Phallii274_779_rc REXdb_ID12378 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Phallii274_780 REXdb_ID7445 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Phallii274_783 REXdb_ID12365 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCAGGTTAC (tRNA-Met) - not tested Phallii274_784_rc REXdb_ID4541 Ty1/copia_CL169 (6) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + + - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Phallii274_785_rc REXdb_ID8648 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCACCAGGTAGGGG (tRNA-Arg) - not tested Phallii274_786 REXdb_ID7422 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Phallii274_790 REXdb_ID9648 Ty3/gypsy_CL080 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCACCAGGTAGGGG (tRNA-Arg) - not tested Phallii274_791_rc REXdb_ID4542 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Phallii274_792 REXdb_ID12359 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Phallii274_793 REXdb_ID8618 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Phallii274_795_rc REXdb_ID9642 Ty3/gypsy_CL080 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Phallii274_796 REXdb_ID3443 Ty1/copia_CL407 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Phallii274_799 REXdb_ID12381 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGATC (tRNA-Met) - not tested Phallii274_801_rc REXdb_ID11340 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 - - not tested Phallii274_803_rc REXdb_ID4543 Ty1/copia_CL169 (6) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Phallii274_804 REXdb_ID4544 Ty1/copia_CL169 (6) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - + - not tested not tested 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Phallii274_808 REXdb_ID12889 Ty3/gypsy_CL058 (19) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Phallii274_810_rc REXdb_ID8620 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTGGGGG (tRNA-Arg) - not tested Phallii274_815_rc REXdb_ID8661 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 - - not tested Phallii274_82_rc REXdb_ID8626 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Phallii274_824_rc REXdb_ID12354 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 TGGTGTTCGCCT (tRNA-?) - not tested Phallii274_826 REXdb_ID8630 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Phallii274_827 REXdb_ID2880 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGTAA (tRNA-?) - not tested Phallii274_828_rc REXdb_ID2881 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGTAA (tRNA-?) - not tested Phallii274_830 REXdb_ID4545 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Phallii274_835_rc REXdb_ID12352 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Phallii274_840 REXdb_ID7440 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Phallii274_841 REXdb_ID2882 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGTCG (tRNA-?) - not tested Phallii274_842_rc REXdb_ID13126 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACGAT (tRNA-?) - not tested Phallii274_843_rc REXdb_ID2883 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGATGC (tRNA-Met) - not tested Phallii274_844_rc REXdb_ID7429 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 - - not tested Phallii274_847 REXdb_ID11366 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Phallii274_849_rc REXdb_ID3444 Ty1/copia_CL298 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Phallii274_85_rc REXdb_ID2884 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGGC (tRNA-Met) - not tested Phallii274_850_rc REXdb_ID3445 Ty1/copia_CL406 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Phallii274_851_rc REXdb_ID7441 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Phallii274_853 REXdb_ID9639 Ty3/gypsy_CL080 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGATAGGGG (tRNA-Arg) - not tested Phallii274_855 REXdb_ID7413 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Phallii274_857 REXdb_ID12361 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Phallii274_859 REXdb_ID4546 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCAAGGTT (tRNA-Met) - not tested Phallii274_86 REXdb_ID8615 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGAGCTCGA (tRNA-Thr) - not tested Phallii274_861_rc REXdb_ID7420 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Phallii274_863 REXdb_ID7426 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Phallii274_864_rc REXdb_ID11353 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Phallii274_865_rc REXdb_ID11356 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Phallii274_869_rc REXdb_ID8688 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Phallii274_87_rc REXdb_ID12886 Ty3/gypsy_CL058 (19) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTTTCAGAGC (tRNA-Met) - not tested Phallii274_870 REXdb_ID8649 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 4 TGGTGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Phallii274_873 REXdb_ID8640 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - - - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Phallii274_878 REXdb_ID8691 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGATAGGGGG (tRNA-Arg) - not tested Phallii274_879_rc REXdb_ID12344 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Phallii274_884 REXdb_ID12883 Ty3/gypsy_CL058 (19) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - + 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Phallii274_885 REXdb_ID3446 Ty1/copia_CL567 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Phallii274_890_rc REXdb_ID8684 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCACGCCAGGTAGGGGT (tRNA-Arg) - not tested Phallii274_895_rc REXdb_ID11350 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Phallii274_896 REXdb_ID12385 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 - - not tested Phallii274_9 REXdb_ID9640 Ty3/gypsy_CL080 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCGCCAGGTAGGGGTT (tRNA-Arg) - not tested Phallii274_901 REXdb_ID13713 Ty3/gypsy_CL616 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATT (tRNA-Met) - not tested Phallii274_904 REXdb_ID7402 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACCT (tRNA-Arg) - not tested Phallii274_905_rc REXdb_ID8672 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 - - not tested Phallii274_906 REXdb_ID8678 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 - - not tested Phallii274_911 REXdb_ID3447 Ty1/copia_CL138 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Phallii274_913 REXdb_ID8658 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCTAGGTAGGGGT (tRNA-Arg) - not tested Phallii274_917_rc REXdb_ID13021 Ty3/gypsy_CL142 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTTATCAGAG (tRNA-?) - not tested Phallii274_92_rc REXdb_ID8692 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Phallii274_932_rc REXdb_ID2885 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGTCG (tRNA-?) - not tested Phallii274_933 REXdb_ID3448 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 4 - - not tested Phallii274_934_rc REXdb_ID12334 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 4 - - not tested Phallii274_935 REXdb_ID8635 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Phallii274_939 REXdb_ID7448 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Phallii274_94 REXdb_ID7425 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCGGTGGGACCTC (tRNA-Arg) - not tested Phallii274_946 REXdb_ID7404 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGTCCAG (tRNA-?) - not tested Phallii274_947_rc REXdb_ID12890 Ty3/gypsy_CL058 (19) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Phallii274_951_rc REXdb_ID7433 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGAACGCCCGG (tRNA-?) - not tested Phallii274_960 REXdb_ID8628 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCTAGGTAGGGGG (tRNA-Arg) - not tested Phallii274_964 REXdb_ID13096 Ty3/gypsy_CL617 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 TGGTATCAGAGCCG (tRNA-Met) - not tested Phallii274_966 REXdb_ID12881 Ty3/gypsy_CL058 (19) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Phallii274_968_rc REXdb_ID2886 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGTAG (tRNA-?) - not tested Phallii274_97 REXdb_ID13139 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGGTT (tRNA-?) - not tested Phallii274_990 REXdb_ID11906 Ty3/gypsy_CL137 (6) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATTCAGAG (tRNA-?) - not tested Phallii274_991 REXdb_ID2887 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 - - not tested Phallii274_992_rc REXdb_ID8619 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 - - not tested Phallii274_996_rc REXdb_ID12880 Ty3/gypsy_CL058 (19) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Phallii274_997 REXdb_ID7438 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + - - - - - - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Phallii274_998 REXdb_ID8623 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested PhyP_ID251 REXdb_ID11323 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - not tested not tested not tested not tested PicG1_ID259 REXdb_ID12054 Ty3/gypsy_CL323 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - not tested not tested not tested not tested PIGY-1 REXdb_ID6781 Ty3/gypsy_CL227 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - not tested not tested not tested not tested PinT1_ID262 REXdb_ID12056 Ty3/gypsy_CL323 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - not tested not tested not tested not tested PinT2_ID265 REXdb_ID12057 Ty3/gypsy_CL618 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - not tested not tested not tested not tested PinT3_ID266 REXdb_ID12059 Ty3/gypsy_CL059 (19) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - not tested not tested not tested not tested PinT4_ID267 REXdb_ID12058 Ty3/gypsy_CL059 (19) Class_I::LTR::Ty3/gypsy::chromovirus::CRM - + + + + - + - - - not tested not tested not tested not tested not tested not tested PinT5_ID268 REXdb_ID12060 Ty3/gypsy_CL059 (19) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - not tested not tested not tested not tested PiSat1_ID200 REXdb_ID12032 Ty3/gypsy_CL103 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested PopT_ID203 REXdb_ID12329 Ty3/gypsy_CL237 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - not tested not tested not tested not tested PopT1_ID21 REXdb_ID12034 Ty3/gypsy_CL235 (3) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested PopT10_ID168 REXdb_ID12033 Ty3/gypsy_CL235 (3) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested PopT2_ID20 REXdb_ID12035 Ty3/gypsy_CL127 (7) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested PopT3_ID196 REXdb_ID12036 Ty3/gypsy_CL236 (3) Class_I::LTR::Ty3/gypsy::chromovirus::CRM - + + + + - - + - - not tested not tested not tested not tested not tested not tested PopT4_ID191 REXdb_ID12037 Ty3/gypsy_CL143 (6) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - not tested not tested not tested not tested PopT5_ID192 REXdb_ID12038 Ty3/gypsy_CL324 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - not tested not tested not tested not tested PopT6_ID188 REXdb_ID12039 Ty3/gypsy_CL325 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - not tested not tested not tested not tested PopT7_ID193 REXdb_ID12040 Ty3/gypsy_CL619 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - not tested not tested not tested not tested PopT8_ID197 REXdb_ID12041 Ty3/gypsy_CL090 (11) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - not tested not tested not tested not tested PopT9_ID194 REXdb_ID12042 Ty3/gypsy_CL104 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - not tested not tested not tested not tested PopT9_ID195 REXdb_ID12055 Ty3/gypsy_CL104 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - not tested not tested not tested not tested POtra_1_rc REXdb_ID11834 Ty3/gypsy_CL090 (11) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested POtra_10_rc REXdb_ID13536 Ty3/gypsy_CL326 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested POtra_17 REXdb_ID3449 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested POtra_2 REXdb_ID3450 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 - - not tested POtra_22_rc REXdb_ID13538 Ty3/gypsy_CL327 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 4 - - not tested POtra_25_rc REXdb_ID13714 Ty3/gypsy_CL620 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested POtra_27_rc REXdb_ID745 Ty1/copia_CL572 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCT (tRNA-Met) - not tested POtra_29_rc REXdb_ID13165 Ty3/gypsy_CL067 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested POtra_45 REXdb_ID746 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested POtra_54_rc REXdb_ID13540 Ty3/gypsy_CL328 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested POtra_55_rc REXdb_ID747 Ty1/copia_CL573 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested POtra_64 REXdb_ID3451 Ty1/copia_CL574 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested POtra_68 REXdb_ID11837 Ty3/gypsy_CL090 (11) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested POtra_69_rc REXdb_ID13541 Ty3/gypsy_CL328 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested POtra_72 REXdb_ID748 Ty1/copia_CL121 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested POtra_73 REXdb_ID3452 Ty1/copia_CL299 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested POtra_81_rc REXdb_ID11977 Ty3/gypsy_CL621 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested POtra_89 REXdb_ID3453 Ty1/copia_CL575 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 - - not tested POtra_91_rc REXdb_ID749 Ty1/copia_CL214 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCA (tRNA-Met) - not tested POtra_94 REXdb_ID3454 Ty1/copia_CL576 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATAAGAGCC (tRNA-Met) - not tested POtra_96_rc REXdb_ID3455 Ty1/copia_CL577 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTT (tRNA-Met) - not tested POtra_97_rc REXdb_ID13715 Ty3/gypsy_CL622 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 4 TGGCTATAAAAA (tRNA-?) - not tested POtrs_10_rc REXdb_ID13716 Ty3/gypsy_CL623 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested POtrs_21_rc REXdb_ID13717 Ty3/gypsy_CL624 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested POtrs_24 REXdb_ID750 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested POtrs_26 REXdb_ID751 Ty1/copia_CL573 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested POtrs_27 REXdb_ID13542 Ty3/gypsy_CL329 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested POtrs_28 REXdb_ID13166 Ty3/gypsy_CL067 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested POtrx_11 REXdb_ID3456 Ty1/copia_CL575 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 - - not tested POtrx_14_rc REXdb_ID13539 Ty3/gypsy_CL327 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested POtrx_15 REXdb_ID11835 Ty3/gypsy_CL090 (11) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested POtrx_3 REXdb_ID11978 Ty3/gypsy_CL324 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Ppatens251_1_rc REXdb_ID10048 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - ATTGACAAGAGTG not tested Ppatens251_10_rc REXdb_ID10441 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_101_rc REXdb_ID9824 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_102 REXdb_ID5434 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_104_rc REXdb_ID10006 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_105_rc REXdb_ID10953 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_107 REXdb_ID10389 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_109_rc REXdb_ID10659 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_11_rc REXdb_ID5582 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_111 REXdb_ID10463 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_112_rc REXdb_ID10390 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_113 REXdb_ID10797 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1130_rc REXdb_ID11135 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1133 REXdb_ID10831 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1135_rc REXdb_ID10011 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1136 REXdb_ID11007 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1137 REXdb_ID10634 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1139 REXdb_ID10936 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_114_rc REXdb_ID10144 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1140_rc REXdb_ID11060 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTG not tested Ppatens251_1142_rc REXdb_ID5448 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1144 REXdb_ID11179 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1145_rc REXdb_ID5478 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1146 REXdb_ID10412 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1147 REXdb_ID10722 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1148 REXdb_ID10555 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1149_rc REXdb_ID5577 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAATTCGACGTGAA (tRNA-Sup) - not tested Ppatens251_115_rc REXdb_ID11027 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAA (tRNA-Ile) TTGTCGAGACTG not tested Ppatens251_1150_rc REXdb_ID5505 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1151_rc REXdb_ID9894 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1152 REXdb_ID10944 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1153 REXdb_ID9954 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1154 REXdb_ID5605 Ty3/gypsy_CL081 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGCTTCCACTGAGAG (tRNA-Thr) - not tested Ppatens251_1155 REXdb_ID10532 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1156 REXdb_ID11183 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1158 REXdb_ID10413 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1159 REXdb_ID5618 Ty3/gypsy_CL625 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGGCGTGAA (tRNA-Trp) - not tested Ppatens251_116_rc REXdb_ID10774 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1160 REXdb_ID10113 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1161 REXdb_ID10069 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1162_rc REXdb_ID10798 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1163_rc REXdb_ID10442 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1164_rc REXdb_ID5523 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1165 REXdb_ID10914 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 4 - - not tested Ppatens251_1166 REXdb_ID10996 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1167 REXdb_ID9923 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1169_rc REXdb_ID10336 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_117_rc REXdb_ID9827 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1170_rc REXdb_ID11057 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Ppatens251_1171 REXdb_ID11124 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1172 REXdb_ID10673 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1173_rc REXdb_ID11127 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTGA not tested Ppatens251_1174_rc REXdb_ID10443 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1175_rc REXdb_ID10610 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1176 REXdb_ID6439 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTGCCGGGGATTG (tRNA-Asp) - not tested Ppatens251_1178_rc REXdb_ID6496 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTGTCGGGGA (tRNA-Asp) - not tested Ppatens251_1179 REXdb_ID5561 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_118_rc REXdb_ID6487 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_1180_rc REXdb_ID9870 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1182 REXdb_ID10007 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1183 REXdb_ID9874 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1184_rc REXdb_ID6498 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCACCGGTGC (tRNA-?) - not tested Ppatens251_1185_rc REXdb_ID10275 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1186 REXdb_ID10821 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1187 REXdb_ID5611 Ty3/gypsy_CL081 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGCTTCCACTGAGAG (tRNA-Thr) - not tested Ppatens251_1188_rc REXdb_ID5541 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_119_rc REXdb_ID5502 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1191_rc REXdb_ID10178 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1192_rc REXdb_ID10124 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1194 REXdb_ID10955 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1195_rc REXdb_ID9995 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1196_rc REXdb_ID10515 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1198 REXdb_ID5528 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAATCCGA (tRNA-Tyr) - not tested Ppatens251_1199 REXdb_ID10697 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_12 REXdb_ID10759 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_120 REXdb_ID5506 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1205 REXdb_ID10922 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1207 REXdb_ID10839 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1209 REXdb_ID9903 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1210_rc REXdb_ID11164 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1211_rc REXdb_ID10888 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1212_rc REXdb_ID10611 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1214 REXdb_ID11196 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1215_rc REXdb_ID9861 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1216_rc REXdb_ID10698 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1217 REXdb_ID10967 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1218_rc REXdb_ID10056 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1219_rc REXdb_ID10254 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_122_rc REXdb_ID10775 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1220 REXdb_ID10635 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1221 REXdb_ID6445 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCACCGTTGCCGGGGAT (tRNA-Asp) - not tested Ppatens251_1223_rc REXdb_ID10155 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1224_rc REXdb_ID10612 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1225 REXdb_ID10321 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1226 REXdb_ID10414 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1227 REXdb_ID11058 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_1228_rc REXdb_ID11197 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTG not tested Ppatens251_1229_rc REXdb_ID10179 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_123 REXdb_ID9996 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 4 - TTGACAAGAGT not tested Ppatens251_1230_rc REXdb_ID10360 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1231_rc REXdb_ID10710 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1232 REXdb_ID10723 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1234_rc REXdb_ID10114 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1235_rc REXdb_ID11160 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1236_rc REXdb_ID9895 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1237_rc REXdb_ID11170 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1239 REXdb_ID10556 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1240 REXdb_ID10613 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1241_rc REXdb_ID10799 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1242 REXdb_ID10145 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1243 REXdb_ID6469 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_1245_rc REXdb_ID10744 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1246_rc REXdb_ID11054 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_1247_rc REXdb_ID10979 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1249_rc REXdb_ID10156 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_125_rc REXdb_ID5613 Ty3/gypsy_CL081 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGCTTCCACTGAGAG (tRNA-Thr) - not tested Ppatens251_1250 REXdb_ID10918 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1252 REXdb_ID10464 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1253_rc REXdb_ID10012 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1254 REXdb_ID9989 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1255 REXdb_ID10465 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1256 REXdb_ID10745 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1258 REXdb_ID10391 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1259 REXdb_ID10850 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_126_rc REXdb_ID5484 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1261 REXdb_ID11187 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1262 REXdb_ID10125 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1263 REXdb_ID11065 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_1264_rc REXdb_ID6506 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Ppatens251_1265 REXdb_ID5576 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1266_rc REXdb_ID10636 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1267_rc REXdb_ID11049 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_1268 REXdb_ID10444 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1269 REXdb_ID10533 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1270 REXdb_ID10557 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1272 REXdb_ID10711 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1273_rc REXdb_ID10445 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1274 REXdb_ID11037 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_1275_rc REXdb_ID10392 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1276 REXdb_ID10466 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1277 REXdb_ID10180 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1278 REXdb_ID10573 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1279_rc REXdb_ID10276 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_128 REXdb_ID10614 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1280_rc REXdb_ID5573 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACTCGACGTGAA (tRNA-Trp) - not tested Ppatens251_1282_rc REXdb_ID11205 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1283 REXdb_ID6450 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTGTCGGGGAT (tRNA-Asp) - not tested Ppatens251_1285 REXdb_ID9955 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1286 REXdb_ID10277 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1288_rc REXdb_ID10516 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1289_rc REXdb_ID10674 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_129 REXdb_ID10491 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1290 REXdb_ID6471 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_1291_rc REXdb_ID10255 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1292 REXdb_ID10337 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1293 REXdb_ID9972 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1295 REXdb_ID10467 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1296_rc REXdb_ID10760 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1297_rc REXdb_ID10468 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1298 REXdb_ID10534 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1299 REXdb_ID11038 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_13 REXdb_ID10761 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_130 REXdb_ID10762 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - ATTGACAAGAGT not tested Ppatens251_1300_rc REXdb_ID10535 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1301_rc REXdb_ID10278 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1302_rc REXdb_ID11152 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1304_rc REXdb_ID10322 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1305 REXdb_ID11161 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTGA not tested Ppatens251_1306_rc REXdb_ID11174 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTGA not tested Ppatens251_1307_rc REXdb_ID6443 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCACCGCTGCCGGGGAT (tRNA-Asp) - not tested Ppatens251_1308 REXdb_ID10615 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - - - - - - - 5 - - not tested Ppatens251_1309_rc REXdb_ID10822 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_131 REXdb_ID10393 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1310 REXdb_ID5453 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1311_rc REXdb_ID5454 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAATCCGACGTGAA (tRNA-Trp) - not tested Ppatens251_1312 REXdb_ID10746 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1313_rc REXdb_ID10946 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1314 REXdb_ID10675 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - not tested not tested 5 - TTGACAAGAGT not tested Ppatens251_1315 REXdb_ID9924 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1317_rc REXdb_ID11144 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1318 REXdb_ID5569 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_132 REXdb_ID10517 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1320 REXdb_ID10536 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1321 REXdb_ID10776 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1322_rc REXdb_ID10034 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1323_rc REXdb_ID10446 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - ATTGACAAGAGTG not tested Ppatens251_1324 REXdb_ID10070 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTA not tested Ppatens251_1325_rc REXdb_ID11193 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1326 REXdb_ID10082 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1327_rc REXdb_ID10095 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1328 REXdb_ID10731 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1329 REXdb_ID10146 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_133 REXdb_ID10083 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1331 REXdb_ID10921 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1332 REXdb_ID10881 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1334_rc REXdb_ID10057 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1335 REXdb_ID10492 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1336 REXdb_ID10712 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1337_rc REXdb_ID10101 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1338_rc REXdb_ID5609 Ty3/gypsy_CL081 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGCTTCCACTGAGAG (tRNA-Thr) - not tested Ppatens251_1339 REXdb_ID10574 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_134_rc REXdb_ID10447 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1340 REXdb_ID10616 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1341_rc REXdb_ID9997 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1343 REXdb_ID6527 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTGCCGGGGAA (tRNA-Asp) - not tested Ppatens251_1344_rc REXdb_ID10617 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1345 REXdb_ID10323 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1346 REXdb_ID11016 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_1347_rc REXdb_ID10846 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1348 REXdb_ID10084 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1349 REXdb_ID11252 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_135 REXdb_ID10870 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1350 REXdb_ID11136 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1351 REXdb_ID6488 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_1352_rc REXdb_ID9881 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1353 REXdb_ID5610 Ty3/gypsy_CL081 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGCTTCCACTGA (tRNA-Thr) - not tested Ppatens251_1354_rc REXdb_ID5444 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1358_rc REXdb_ID11001 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1359 REXdb_ID9973 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_136_rc REXdb_ID10233 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1360 REXdb_ID11206 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1361_rc REXdb_ID10008 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1362_rc REXdb_ID10777 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1363_rc REXdb_ID11128 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1364_rc REXdb_ID10493 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1365_rc REXdb_ID10981 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1366 REXdb_ID11157 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1367_rc REXdb_ID5455 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTAAATCTGA (tRNA-?) - not tested Ppatens251_1369 REXdb_ID10618 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1370 REXdb_ID10291 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1371 REXdb_ID11198 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1372 REXdb_ID11212 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1373_rc REXdb_ID10869 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1374 REXdb_ID10238 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1376_rc REXdb_ID11145 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1377_rc REXdb_ID10115 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1378_rc REXdb_ID5564 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACATGAA (tRNA-Trp) - not tested Ppatens251_138 REXdb_ID5584 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1380 REXdb_ID10494 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1381_rc REXdb_ID10924 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1382_rc REXdb_ID10157 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1383 REXdb_ID10619 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1384_rc REXdb_ID10361 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - ATTGACAAGAGT not tested Ppatens251_1385_rc REXdb_ID5550 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1387 REXdb_ID10778 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1388 REXdb_ID10899 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - not tested not tested - - 5 - - not tested Ppatens251_1389 REXdb_ID6453 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGTGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Ppatens251_139 REXdb_ID10900 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1390 REXdb_ID10126 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1391 REXdb_ID10884 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1393_rc REXdb_ID10830 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1394 REXdb_ID10013 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1395_rc REXdb_ID10763 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_140 REXdb_ID11015 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_1404 REXdb_ID10575 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1405 REXdb_ID10985 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1406 REXdb_ID11239 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1407_rc REXdb_ID10324 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1408 REXdb_ID10207 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1409_rc REXdb_ID11083 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1410_rc REXdb_ID10208 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1411_rc REXdb_ID5473 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTAAATCCGA (tRNA-?) - not tested Ppatens251_1412 REXdb_ID10907 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1414_rc REXdb_ID5535 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1415 REXdb_ID10558 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1417 REXdb_ID10338 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1419 REXdb_ID5445 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1420_rc REXdb_ID5456 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1421 REXdb_ID5495 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1422 REXdb_ID10882 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1423 REXdb_ID9944 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1424 REXdb_ID10518 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1425 REXdb_ID10929 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1426 REXdb_ID11024 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_1427 REXdb_ID10906 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1428 REXdb_ID11199 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1429_rc REXdb_ID11251 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTG not tested Ppatens251_143_rc REXdb_ID10576 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1431_rc REXdb_ID11218 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1432_rc REXdb_ID10893 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - ATTGACAAGAGT not tested Ppatens251_1433 REXdb_ID10058 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1435_rc REXdb_ID9945 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1436_rc REXdb_ID6513 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTGCCGGGGAA (tRNA-Asp) - not tested Ppatens251_1439 REXdb_ID10059 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - ATTGACAAGAGT not tested Ppatens251_144_rc REXdb_ID10937 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1440 REXdb_ID6504 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTACCGGGGA (tRNA-Asp) - not tested Ppatens251_1441 REXdb_ID5509 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1442 REXdb_ID10577 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1443 REXdb_ID10787 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1444_rc REXdb_ID5601 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACTCGACGTGAA (tRNA-Trp) - not tested Ppatens251_1445_rc REXdb_ID10394 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1446_rc REXdb_ID10448 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1447 REXdb_ID11242 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTG not tested Ppatens251_1449_rc REXdb_ID10637 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_145_rc REXdb_ID11066 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Ppatens251_1450_rc REXdb_ID10158 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1451 REXdb_ID9925 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1452_rc REXdb_ID10857 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1453_rc REXdb_ID11050 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_1454 REXdb_ID11223 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1455 REXdb_ID9843 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1456_rc REXdb_ID10620 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1457_rc REXdb_ID10519 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1458 REXdb_ID9974 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1459 REXdb_ID2620 Ty1/copia_CL170 (6) Class_I::LTR::Ty1/copia::Bryco + + + + + - - - - - - - 5 TGGGCCCACACA (tRNA-?) - GGTTATGGGCCCACAC (tRNA-Met) Ppatens251_146_rc REXdb_ID10559 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1460 REXdb_ID5589 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1461_rc REXdb_ID6512 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGAGTGTTAGGTAT (tRNA-Ala) - not tested Ppatens251_1462_rc REXdb_ID11221 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTG not tested Ppatens251_1463 REXdb_ID10931 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1465_rc REXdb_ID10660 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1467 REXdb_ID9926 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1468 REXdb_ID9889 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1469 REXdb_ID5474 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_147_rc REXdb_ID6493 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTGC (tRNA-Asp) - not tested Ppatens251_1470 REXdb_ID9858 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1472 REXdb_ID11084 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_1473_rc REXdb_ID10840 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1474_rc REXdb_ID10578 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1475 REXdb_ID9984 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1477_rc REXdb_ID11153 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1478 REXdb_ID9975 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1479 REXdb_ID5529 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_148_rc REXdb_ID10362 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1480 REXdb_ID10102 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1481_rc REXdb_ID6525 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCACCGTTGCCGGGGAA (tRNA-Asp) - not tested Ppatens251_1482 REXdb_ID10209 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1483_rc REXdb_ID10234 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1485 REXdb_ID10495 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1486_rc REXdb_ID5475 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1488 REXdb_ID10699 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1489_rc REXdb_ID6449 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTACCGGGGA (tRNA-Asp) - not tested Ppatens251_149 REXdb_ID9946 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1490 REXdb_ID6441 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCACTGT (tRNA-?) - not tested Ppatens251_1491 REXdb_ID10363 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1494_rc REXdb_ID5438 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1495 REXdb_ID10469 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1496 REXdb_ID10724 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1497_rc REXdb_ID9990 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1498_rc REXdb_ID10845 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1499_rc REXdb_ID10859 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_15 REXdb_ID10147 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_150 REXdb_ID11191 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1500 REXdb_ID10023 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1501_rc REXdb_ID10415 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1503_rc REXdb_ID9904 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1504 REXdb_ID10732 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1506 REXdb_ID10968 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1507_rc REXdb_ID10912 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - ATTGACAAGAGT not tested Ppatens251_1508 REXdb_ID10621 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1509_rc REXdb_ID10579 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_151_rc REXdb_ID11194 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - GTTGTCGAGACT not tested Ppatens251_1510_rc REXdb_ID6474 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_1511 REXdb_ID10292 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1512_rc REXdb_ID10239 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1513_rc REXdb_ID10395 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1514 REXdb_ID10071 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1515 REXdb_ID9862 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1516_rc REXdb_ID10689 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1517_rc REXdb_ID11059 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1518 REXdb_ID10791 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1519 REXdb_ID10779 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_152 REXdb_ID10088 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1520_rc REXdb_ID10339 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1521_rc REXdb_ID10835 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1522_rc REXdb_ID10733 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1523 REXdb_ID10520 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1526 REXdb_ID11243 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1527 REXdb_ID10416 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1529_rc REXdb_ID11192 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_153_rc REXdb_ID5465 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1531 REXdb_ID10210 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1532_rc REXdb_ID10747 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - - - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1533_rc REXdb_ID11210 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTG not tested Ppatens251_1534 REXdb_ID10449 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1536_rc REXdb_ID5480 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1537 REXdb_ID9927 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1538 REXdb_ID11067 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_1539_rc REXdb_ID2621 Ty1/copia_CL170 (6) Class_I::LTR::Ty1/copia::Bryco + + + + + - - - - - - - 5 TGGGCCCACATT (tRNA-?) - GGTTATGGGCCCACA (tRNA-Met) Ppatens251_1540_rc REXdb_ID10537 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1541_rc REXdb_ID9976 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1544 REXdb_ID9844 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1545_rc REXdb_ID10851 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1546 REXdb_ID10560 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1547 REXdb_ID10417 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1549_rc REXdb_ID6481 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_1550_rc REXdb_ID10035 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1551_rc REXdb_ID11085 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_1552 REXdb_ID10580 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1553_rc REXdb_ID10538 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1554 REXdb_ID6486 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGTGCCGCTGCCGGGGA (tRNA-Asp) - not tested Ppatens251_1555 REXdb_ID10036 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1556_rc REXdb_ID9882 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1557_rc REXdb_ID9977 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1558 REXdb_ID9863 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1559 REXdb_ID10037 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_156 REXdb_ID10047 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1560_rc REXdb_ID10891 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1561 REXdb_ID10038 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1562_rc REXdb_ID10925 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1563 REXdb_ID6518 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGAGTGTTAGGTAT (tRNA-Ala) - not tested Ppatens251_1564_rc REXdb_ID9956 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1565 REXdb_ID10875 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1566 REXdb_ID10725 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1568_rc REXdb_ID5567 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1569 REXdb_ID9935 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_157 REXdb_ID10127 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1570_rc REXdb_ID5488 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1571_rc REXdb_ID10809 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1572_rc REXdb_ID10198 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1573 REXdb_ID10159 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1574 REXdb_ID6461 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_1575_rc REXdb_ID10661 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1576_rc REXdb_ID10072 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1577_rc REXdb_ID5460 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1579_rc REXdb_ID5514 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_158 REXdb_ID10915 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1580_rc REXdb_ID11035 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTA not tested Ppatens251_1581_rc REXdb_ID10340 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1582_rc REXdb_ID5594 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1583_rc REXdb_ID10959 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1584_rc REXdb_ID10256 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1585_rc REXdb_ID5446 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1586_rc REXdb_ID9978 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1587 REXdb_ID10450 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1588_rc REXdb_ID10103 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1589_rc REXdb_ID5536 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_159 REXdb_ID11098 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1590_rc REXdb_ID6495 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTGCCGGGGA (tRNA-Asp) - not tested Ppatens251_1591_rc REXdb_ID10938 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1594 REXdb_ID6472 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_1595 REXdb_ID10211 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1597 REXdb_ID10257 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1598_rc REXdb_ID10561 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1599_rc REXdb_ID10800 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_16_rc REXdb_ID10199 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1601_rc REXdb_ID9966 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1602 REXdb_ID10009 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1603 REXdb_ID10780 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1605 REXdb_ID11146 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1606 REXdb_ID10160 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1607_rc REXdb_ID10644 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1608_rc REXdb_ID10934 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1609 REXdb_ID10293 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_161_rc REXdb_ID9849 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1611_rc REXdb_ID10451 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1612_rc REXdb_ID10096 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1615_rc REXdb_ID11086 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_1617_rc REXdb_ID11028 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_1618_rc REXdb_ID5581 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTAAA (tRNA-Trp) - not tested Ppatens251_1619 REXdb_ID10539 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1620_rc REXdb_ID10085 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1621_rc REXdb_ID10713 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1622 REXdb_ID9998 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1623_rc REXdb_ID11207 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTG not tested Ppatens251_1626 REXdb_ID10148 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1627 REXdb_ID10521 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1628 REXdb_ID9831 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1629_rc REXdb_ID11238 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_163_rc REXdb_ID9875 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1630_rc REXdb_ID11175 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1631 REXdb_ID9907 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1632_rc REXdb_ID10258 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1633 REXdb_ID10161 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1634_rc REXdb_ID10039 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1635_rc REXdb_ID10279 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1636 REXdb_ID10470 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1637_rc REXdb_ID10073 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1638 REXdb_ID10364 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1639 REXdb_ID11214 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_164 REXdb_ID10089 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1640 REXdb_ID5440 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCGGA (tRNA-?) - not tested Ppatens251_1643 REXdb_ID10954 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1644_rc REXdb_ID9883 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1645_rc REXdb_ID10832 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1646_rc REXdb_ID9915 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1648_rc REXdb_ID10090 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1649 REXdb_ID9896 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_165_rc REXdb_ID10957 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1650_rc REXdb_ID10104 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1653_rc REXdb_ID5485 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACTCGACGTGAA (tRNA-Trp) - not tested Ppatens251_1654_rc REXdb_ID10014 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1658 REXdb_ID5538 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1660 REXdb_ID11087 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_1661 REXdb_ID10854 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1662_rc REXdb_ID10965 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1665 REXdb_ID10040 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1666_rc REXdb_ID10105 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1667_rc REXdb_ID10792 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1668_rc REXdb_ID10581 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1669_rc REXdb_ID9884 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_167_rc REXdb_ID10181 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1670_rc REXdb_ID10418 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1671_rc REXdb_ID10805 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1672_rc REXdb_ID10106 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1673_rc REXdb_ID10496 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1675 REXdb_ID11061 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_1677 REXdb_ID11245 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1678_rc REXdb_ID10294 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1679_rc REXdb_ID10295 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_168_rc REXdb_ID10297 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1680 REXdb_ID10296 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1681 REXdb_ID9885 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1682_rc REXdb_ID10182 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1683 REXdb_ID10471 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1684_rc REXdb_ID10116 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1685_rc REXdb_ID10522 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1686 REXdb_ID6475 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_1687 REXdb_ID10128 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1688 REXdb_ID11228 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_169_rc REXdb_ID9850 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1690_rc REXdb_ID11241 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1691 REXdb_ID11113 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_1692_rc REXdb_ID10748 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1693_rc REXdb_ID10074 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1694 REXdb_ID11180 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1695 REXdb_ID6477 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_1696_rc REXdb_ID9957 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1697 REXdb_ID10091 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1698 REXdb_ID11147 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTG not tested Ppatens251_1699 REXdb_ID11013 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_17 REXdb_ID10582 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_170 REXdb_ID10540 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1700 REXdb_ID10129 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1701_rc REXdb_ID10690 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1702 REXdb_ID6680 Ty3/gypsy_CL144 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGCGTTTGCCGGGAG (tRNA-Gly) - not tested Ppatens251_1703_rc REXdb_ID10130 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1704 REXdb_ID6470 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_1705 REXdb_ID11020 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_1706 REXdb_ID9936 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1707 REXdb_ID11184 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTGA not tested Ppatens251_1708_rc REXdb_ID9834 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1709_rc REXdb_ID6500 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCTGCTGC (tRNA-?) - not tested Ppatens251_1711 REXdb_ID10980 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1713 REXdb_ID9928 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1715 REXdb_ID5510 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1717 REXdb_ID10662 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1718 REXdb_ID10497 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_172 REXdb_ID10240 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1720 REXdb_ID11002 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1721_rc REXdb_ID11051 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAAAGCTA (tRNA-Met) - not tested Ppatens251_1723_rc REXdb_ID10341 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1724_rc REXdb_ID11234 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1725 REXdb_ID10212 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1726_rc REXdb_ID10734 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - ATTGACAAGAGT not tested Ppatens251_1727 REXdb_ID10749 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1728 REXdb_ID9979 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_173_rc REXdb_ID10474 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1730_rc REXdb_ID11072 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Ppatens251_1732 REXdb_ID11088 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAA (tRNA-Ile) TTGTCGAGACT not tested Ppatens251_1735 REXdb_ID5435 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1736 REXdb_ID10472 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1737_rc REXdb_ID6459 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_1738 REXdb_ID10473 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1739 REXdb_ID10419 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_174 REXdb_ID10420 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1740 REXdb_ID10583 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1745 REXdb_ID5562 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1746_rc REXdb_ID10584 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1747_rc REXdb_ID10999 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1748_rc REXdb_ID10498 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1749 REXdb_ID9916 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_175 REXdb_ID11229 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1751_rc REXdb_ID10421 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1753 REXdb_ID10700 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1754 REXdb_ID10499 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1755_rc REXdb_ID10342 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1756 REXdb_ID10280 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1757 REXdb_ID11129 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1758_rc REXdb_ID11029 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAAAGCTA (tRNA-Met) - not tested Ppatens251_176 REXdb_ID10585 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1760 REXdb_ID10365 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1761_rc REXdb_ID10844 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1763 REXdb_ID10908 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1764 REXdb_ID5449 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1765_rc REXdb_ID10793 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - GATTGACAAGAGT not tested Ppatens251_1766_rc REXdb_ID10298 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1768_rc REXdb_ID10299 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_177_rc REXdb_ID9830 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1770 REXdb_ID10987 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1773_rc REXdb_ID6491 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCTGCTGC (tRNA-?) - not tested Ppatens251_1774_rc REXdb_ID5557 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTAAA (tRNA-Trp) - not tested Ppatens251_1775 REXdb_ID10714 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1776 REXdb_ID10107 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1777 REXdb_ID6526 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTGCCGGGAA (tRNA-Asp) - not tested Ppatens251_1779 REXdb_ID10343 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_178_rc REXdb_ID11039 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Ppatens251_1781_rc REXdb_ID10726 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1784 REXdb_ID10735 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1785 REXdb_ID5499 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1786_rc REXdb_ID6764 Ty3/gypsy_CL626 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTGCCGGGGAAC (tRNA-Asp) - not tested Ppatens251_1787_rc REXdb_ID10032 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1788_rc REXdb_ID5450 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1789 REXdb_ID10344 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_179 REXdb_ID10876 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1790_rc REXdb_ID10060 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1791 REXdb_ID10896 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1792_rc REXdb_ID10041 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1793 REXdb_ID10042 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1794 REXdb_ID10024 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1796 REXdb_ID9876 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1798_rc REXdb_ID9897 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1799_rc REXdb_ID11089 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_18 REXdb_ID10213 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_180_rc REXdb_ID11078 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_1800 REXdb_ID9845 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1801_rc REXdb_ID10061 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1802 REXdb_ID11244 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1803 REXdb_ID5587 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAATCCGACGTGAA (tRNA-Trp) - not tested Ppatens251_1804 REXdb_ID10452 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1805_rc REXdb_ID10119 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1806 REXdb_ID10259 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1808_rc REXdb_ID10622 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1809 REXdb_ID10768 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_181_rc REXdb_ID10982 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1810_rc REXdb_ID10075 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1811 REXdb_ID6478 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_1812_rc REXdb_ID10422 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1813_rc REXdb_ID10663 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1814_rc REXdb_ID10523 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1818_rc REXdb_ID10541 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_182 REXdb_ID10300 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1820 REXdb_ID9905 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1821_rc REXdb_ID11106 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1823_rc REXdb_ID10769 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1824_rc REXdb_ID10865 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1828_rc REXdb_ID11114 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_183_rc REXdb_ID9851 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1830_rc REXdb_ID10806 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1831_rc REXdb_ID11140 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1832_rc REXdb_ID10923 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1833 REXdb_ID10366 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1834_rc REXdb_ID10750 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1835 REXdb_ID6519 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCACTGT (tRNA-?) - not tested Ppatens251_1836_rc REXdb_ID11137 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1837_rc REXdb_ID11036 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTG not tested Ppatens251_1838 REXdb_ID11040 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATTAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_1839_rc REXdb_ID11119 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_184_rc REXdb_ID10033 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1840_rc REXdb_ID10848 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1841 REXdb_ID10932 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1842_rc REXdb_ID9906 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1843 REXdb_ID10913 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1844_rc REXdb_ID10367 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1845 REXdb_ID10871 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1847_rc REXdb_ID9980 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1849 REXdb_ID9864 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_185 REXdb_ID10214 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1850_rc REXdb_ID11120 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1851_rc REXdb_ID10960 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1852_rc REXdb_ID11165 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1853 REXdb_ID10025 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1854 REXdb_ID10970 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1855 REXdb_ID9947 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1856 REXdb_ID10301 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1857_rc REXdb_ID11141 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1858 REXdb_ID10260 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1859 REXdb_ID9835 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_186_rc REXdb_ID10345 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1861 REXdb_ID11240 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTTGTCGAGACT not tested Ppatens251_1862_rc REXdb_ID10638 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1863 REXdb_ID10943 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1865_rc REXdb_ID6524 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCACCGCTGCCGGGGA (tRNA-Asp) - not tested Ppatens251_1866_rc REXdb_ID11259 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1867_rc REXdb_ID11254 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1868_rc REXdb_ID6510 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 - - not tested Ppatens251_1869 REXdb_ID10676 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_187_rc REXdb_ID10215 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1871_rc REXdb_ID5507 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAA (tRNA-Trp) - not tested Ppatens251_1872 REXdb_ID11185 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1873_rc REXdb_ID10368 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - ATTGACAAGAGT not tested Ppatens251_1874_rc REXdb_ID5457 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 - - not tested Ppatens251_1876 REXdb_ID5451 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1877 REXdb_ID6681 Ty3/gypsy_CL144 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGCGTTTGCCAGGAGC (tRNA-Glu) - not tested Ppatens251_1878 REXdb_ID10919 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1879_rc REXdb_ID10120 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_188 REXdb_ID11158 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTG not tested Ppatens251_1880 REXdb_ID10162 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1881 REXdb_ID5498 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1882 REXdb_ID10562 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1884_rc REXdb_ID11256 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1885 REXdb_ID9871 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1886 REXdb_ID10396 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1887_rc REXdb_ID9846 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1888 REXdb_ID10842 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1889_rc REXdb_ID9898 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_189_rc REXdb_ID10586 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1890 REXdb_ID10183 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1892 REXdb_ID5614 Ty3/gypsy_CL081 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGCTTCCACTGAGAG (tRNA-Thr) - not tested Ppatens251_1893 REXdb_ID10701 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1895 REXdb_ID6497 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTGT (tRNA-Asp) - not tested Ppatens251_1896_rc REXdb_ID10930 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1897_rc REXdb_ID11215 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1898_rc REXdb_ID10302 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1899_rc REXdb_ID10500 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_19_rc REXdb_ID10739 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_190 REXdb_ID5461 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTAAA (tRNA-Trp) - not tested Ppatens251_1900_rc REXdb_ID10453 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1901 REXdb_ID11107 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTG not tested Ppatens251_1902_rc REXdb_ID10781 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1903_rc REXdb_ID10303 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - ATTGACAAGAGT not tested Ppatens251_1904 REXdb_ID11154 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTG not tested Ppatens251_1905 REXdb_ID10325 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1906_rc REXdb_ID10261 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1907 REXdb_ID10262 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1908_rc REXdb_ID11055 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_191 REXdb_ID11200 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1910_rc REXdb_ID5555 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTAAA (tRNA-Trp) - not tested Ppatens251_1911_rc REXdb_ID10043 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1912 REXdb_ID5436 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1913_rc REXdb_ID10026 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1916_rc REXdb_ID10691 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1917_rc REXdb_ID9828 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1918 REXdb_ID10587 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1919 REXdb_ID10816 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_192 REXdb_ID11219 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1920 REXdb_ID10423 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1921_rc REXdb_ID10764 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1922_rc REXdb_ID10751 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1923 REXdb_ID9917 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1924 REXdb_ID10945 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1925 REXdb_ID11148 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1927 REXdb_ID10397 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1928 REXdb_ID10855 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1929 REXdb_ID6455 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_193 REXdb_ID10326 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1930_rc REXdb_ID10916 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1934_rc REXdb_ID10702 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1935 REXdb_ID10475 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1937 REXdb_ID10327 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1938_rc REXdb_ID9929 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1939 REXdb_ID5599 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAATCCGACGTGAA (tRNA-Trp) - not tested Ppatens251_194_rc REXdb_ID10398 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1940_rc REXdb_ID9908 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGCAAGAGTAC (tRNA-SeC) - not tested Ppatens251_1941 REXdb_ID10369 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1942 REXdb_ID10801 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1943_rc REXdb_ID10542 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1944_rc REXdb_ID10588 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1945_rc REXdb_ID10692 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_195 REXdb_ID11030 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_1950_rc REXdb_ID11003 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1952_rc REXdb_ID10476 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1954_rc REXdb_ID10589 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1956_rc REXdb_ID10983 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1957 REXdb_ID10677 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1958 REXdb_ID11130 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1959_rc REXdb_ID10590 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_196_rc REXdb_ID10371 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1961 REXdb_ID5486 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_1962_rc REXdb_ID11093 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1963 REXdb_ID10370 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1964 REXdb_ID9958 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1965 REXdb_ID10501 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1966 REXdb_ID10664 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1967_rc REXdb_ID6462 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_1968_rc REXdb_ID9999 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1969_rc REXdb_ID10543 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_197 REXdb_ID10752 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1971 REXdb_ID10949 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1972 REXdb_ID10281 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1973 REXdb_ID11149 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1974 REXdb_ID10399 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1975 REXdb_ID5466 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTAAACCCGACGTGAA (tRNA-Trp) - not tested Ppatens251_1976 REXdb_ID9872 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1977 REXdb_ID11062 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Ppatens251_1978 REXdb_ID9836 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1979 REXdb_ID2622 Ty1/copia_CL170 (6) Class_I::LTR::Ty1/copia::Bryco + + + + + - - - - - - - 5 TGGGCCCACATT (tRNA-?) - GGTTATGGGCCCACA (tRNA-Met) Ppatens251_198 REXdb_ID10826 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1980 REXdb_ID10044 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1981_rc REXdb_ID10678 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1983_rc REXdb_ID10544 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1984_rc REXdb_ID10703 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1985_rc REXdb_ID5574 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACTCGACGTGAA (tRNA-Trp) - not tested Ppatens251_1988_rc REXdb_ID10901 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_1989 REXdb_ID10645 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_199_rc REXdb_ID6683 Ty3/gypsy_CL144 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 TGGTGCGTTTGCTGGGAG (tRNA-Gly) - not tested Ppatens251_1990 REXdb_ID5469 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 - - not tested Ppatens251_1992 REXdb_ID11112 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1994 REXdb_ID11246 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_1995 REXdb_ID9890 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1996_rc REXdb_ID10693 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_1997 REXdb_ID10782 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 - + + + + - + - - - not tested not tested 5 - TTGACAAGAGT not tested Ppatens251_1998_rc REXdb_ID10346 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_1999_rc REXdb_ID10928 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2 REXdb_ID9930 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_20_rc REXdb_ID11017 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2000 REXdb_ID9948 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2001_rc REXdb_ID10823 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_2002_rc REXdb_ID10372 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2003 REXdb_ID5593 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACTCGACGTGAAT (tRNA-Trp) - not tested Ppatens251_2004_rc REXdb_ID11121 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2005 REXdb_ID11216 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2006 REXdb_ID10591 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2007 REXdb_ID10328 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2009_rc REXdb_ID11006 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_201 REXdb_ID10740 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2010_rc REXdb_ID10263 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2011 REXdb_ID9985 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2012_rc REXdb_ID10909 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2013_rc REXdb_ID10892 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2014 REXdb_ID5592 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACATGAA (tRNA-Trp) - not tested Ppatens251_2016 REXdb_ID10679 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2017_rc REXdb_ID10948 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - not tested not tested 5 - - not tested Ppatens251_2018 REXdb_ID5596 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_2019 REXdb_ID10200 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_202 REXdb_ID10184 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2020_rc REXdb_ID5530 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACATGAA (tRNA-Trp) - not tested Ppatens251_2021_rc REXdb_ID11041 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_2022 REXdb_ID10940 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2023 REXdb_ID9937 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2024_rc REXdb_ID10545 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2026 REXdb_ID10623 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2027 REXdb_ID10000 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2028_rc REXdb_ID10646 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2029 REXdb_ID5489 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_2031 REXdb_ID5551 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAATCCGACGTGAA (tRNA-Trp) - not tested Ppatens251_2032 REXdb_ID9840 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2033 REXdb_ID5458 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_2035_rc REXdb_ID10824 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_2036_rc REXdb_ID10833 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2037 REXdb_ID9865 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2038 REXdb_ID10131 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2039 REXdb_ID10132 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2040_rc REXdb_ID11142 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2041 REXdb_ID10665 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2042 REXdb_ID11118 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2045 REXdb_ID6465 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_2046_rc REXdb_ID10133 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_2047_rc REXdb_ID10373 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2048_rc REXdb_ID11021 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTG not tested Ppatens251_2049_rc REXdb_ID5441 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAATCCGACGTGAA (tRNA-Trp) - not tested Ppatens251_205 REXdb_ID10788 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2050 REXdb_ID10862 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_2051 REXdb_ID10592 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2052 REXdb_ID10264 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2053 REXdb_ID10593 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2054_rc REXdb_ID6483 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_2056_rc REXdb_ID10817 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2057_rc REXdb_ID11042 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Ppatens251_206 REXdb_ID6492 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_2060_rc REXdb_ID5503 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTAAA (tRNA-Trp) - not tested Ppatens251_2061_rc REXdb_ID10185 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2062 REXdb_ID9959 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2064 REXdb_ID9931 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2065 REXdb_ID9949 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2067 REXdb_ID5515 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_2068_rc REXdb_ID11162 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2070_rc REXdb_ID10282 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2071 REXdb_ID5552 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_2072_rc REXdb_ID6447 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTGCC (tRNA-Asp) - not tested Ppatens251_2074 REXdb_ID10910 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2075 REXdb_ID5437 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_2076 REXdb_ID10304 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2078_rc REXdb_ID10305 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_208 REXdb_ID5571 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGGCGTGAA (tRNA-Trp) - not tested Ppatens251_2080 REXdb_ID6473 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_2083 REXdb_ID9938 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2084_rc REXdb_ID10563 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2085_rc REXdb_ID6456 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_2086_rc REXdb_ID10546 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2088_rc REXdb_ID11014 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_2089_rc REXdb_ID10374 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_209_rc REXdb_ID10108 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2090 REXdb_ID10524 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2091 REXdb_ID10715 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2093_rc REXdb_ID10400 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2094_rc REXdb_ID10825 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2095 REXdb_ID10847 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2096_rc REXdb_ID11076 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_2097_rc REXdb_ID5572 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_2098 REXdb_ID6457 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_2099_rc REXdb_ID11008 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_21_rc REXdb_ID10647 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_210_rc REXdb_ID10149 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2101_rc REXdb_ID5608 Ty3/gypsy_CL081 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGCTTCCTC (tRNA-?) - not tested Ppatens251_2102_rc REXdb_ID11122 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2103 REXdb_ID5565 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAATCAGA (tRNA-?) - not tested Ppatens251_2105 REXdb_ID10502 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2108 REXdb_ID11211 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2109_rc REXdb_ID5563 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_211_rc REXdb_ID9950 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2110 REXdb_ID10818 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2111 REXdb_ID10852 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2113 REXdb_ID10306 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2114_rc REXdb_ID11031 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2115 REXdb_ID5470 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_2116_rc REXdb_ID11150 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2117_rc REXdb_ID10547 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2118 REXdb_ID5447 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_2119 REXdb_ID11258 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 4 - TTGTCGAGACT not tested Ppatens251_212_rc REXdb_ID10827 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2120 REXdb_ID10186 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2121 REXdb_ID10503 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2122_rc REXdb_ID9909 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2126_rc REXdb_ID10424 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2128_rc REXdb_ID11109 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_2129 REXdb_ID10062 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_213_rc REXdb_ID5476 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_2130 REXdb_ID10375 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2131 REXdb_ID10962 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2132 REXdb_ID10504 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2133 REXdb_ID6520 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTGCCGGGAA (tRNA-Asp) - not tested Ppatens251_2134_rc REXdb_ID10963 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2135 REXdb_ID10877 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2136_rc REXdb_ID10879 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2137_rc REXdb_ID10015 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2138_rc REXdb_ID10016 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2139 REXdb_ID5511 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACTCGACGTGAA (tRNA-Trp) - not tested Ppatens251_214_rc REXdb_ID11253 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2140 REXdb_ID10097 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_2142 REXdb_ID11099 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2143 REXdb_ID10241 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2144 REXdb_ID10594 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2146 REXdb_ID10187 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2148_rc REXdb_ID11110 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2149 REXdb_ID10092 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_215 REXdb_ID10624 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2150 REXdb_ID5531 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_2151_rc REXdb_ID11090 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_2152_rc REXdb_ID10564 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2154_rc REXdb_ID10163 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - ATTGACAAGAGTG not tested Ppatens251_2159_rc REXdb_ID11056 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_2161 REXdb_ID5546 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_2162_rc REXdb_ID11018 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_2163_rc REXdb_ID10802 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2164 REXdb_ID10837 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_2165 REXdb_ID5570 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 - - not tested Ppatens251_2166 REXdb_ID10477 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2167_rc REXdb_ID6479 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_2168_rc REXdb_ID5590 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_2169 REXdb_ID10045 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2170_rc REXdb_ID10201 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2171 REXdb_ID10283 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGCAAGAGTAC (tRNA-SeC) - not tested Ppatens251_2173_rc REXdb_ID10098 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2174 REXdb_ID10548 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2176_rc REXdb_ID10933 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2177 REXdb_ID10049 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGCAAGAGTAC (tRNA-SeC) - not tested Ppatens251_2178 REXdb_ID10376 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2179_rc REXdb_ID11011 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTA not tested Ppatens251_218_rc REXdb_ID6514 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTGCCGGGGAA (tRNA-Asp) - not tested Ppatens251_2180 REXdb_ID11247 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2181 REXdb_ID10425 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2182_rc REXdb_ID11077 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_2183_rc REXdb_ID9877 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2185_rc REXdb_ID10666 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_2186_rc REXdb_ID10741 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2187_rc REXdb_ID10838 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2189_rc REXdb_ID11166 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_219 REXdb_ID10964 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2190_rc REXdb_ID10265 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2191_rc REXdb_ID9910 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2192_rc REXdb_ID11073 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Ppatens251_2193 REXdb_ID10117 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2195 REXdb_ID10639 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2198 REXdb_ID11249 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2199_rc REXdb_ID9960 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_22_rc REXdb_ID10860 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_220 REXdb_ID10648 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2200 REXdb_ID10401 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2201 REXdb_ID10972 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2202_rc REXdb_ID10625 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2203 REXdb_ID10807 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2204_rc REXdb_ID9939 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2205 REXdb_ID10377 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2206 REXdb_ID9940 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2207_rc REXdb_ID10121 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2208_rc REXdb_ID6508 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCGCTGTCGGGGA (tRNA-Asp) - not tested Ppatens251_2209_rc REXdb_ID10565 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - GATTGACAAGAGT not tested Ppatens251_221_rc REXdb_ID10680 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2210_rc REXdb_ID10329 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2212 REXdb_ID6499 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCAGCGCTGCC (tRNA-Ile) - not tested Ppatens251_2213 REXdb_ID10770 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2214 REXdb_ID11125 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2215 REXdb_ID6517 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGAGTGTTAGGTAT (tRNA-Ala) - not tested Ppatens251_2216_rc REXdb_ID10819 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2221_rc REXdb_ID10266 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2222 REXdb_ID10505 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2223_rc REXdb_ID10525 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2224_rc REXdb_ID6442 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTGTCGGGGAT (tRNA-Asp) - not tested Ppatens251_2225_rc REXdb_ID5585 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGAC (tRNA-Trp) - not tested Ppatens251_2226 REXdb_ID11171 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2227 REXdb_ID11250 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2228 REXdb_ID10076 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_2229 REXdb_ID10789 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 4 - - not tested Ppatens251_223_rc REXdb_ID11074 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_2231_rc REXdb_ID10086 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2232 REXdb_ID10426 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2234 REXdb_ID11224 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2236 REXdb_ID10753 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2237 REXdb_ID10216 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2238 REXdb_ID5500 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAGCCCGA (tRNA-?) - not tested Ppatens251_2239 REXdb_ID10242 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_224 REXdb_ID9886 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2240 REXdb_ID10902 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2241_rc REXdb_ID9951 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_2242 REXdb_ID6765 Ty3/gypsy_CL627 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - not tested not tested - - 5 TGGTGGGTTTGC (tRNA-?) - not tested Ppatens251_2243 REXdb_ID10754 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2244 REXdb_ID6480 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_2245 REXdb_ID5579 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_2247_rc REXdb_ID6446 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGATTGA (tRNA-Asp) - not tested Ppatens251_2248 REXdb_ID10347 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2249 REXdb_ID10427 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_225 REXdb_ID6502 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCACTGC (tRNA-?) - not tested Ppatens251_2250 REXdb_ID9981 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2251 REXdb_ID11176 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2252_rc REXdb_ID10694 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_2253_rc REXdb_ID10348 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2255 REXdb_ID10952 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - not tested not tested - - 5 - TTGACAAGAGT not tested Ppatens251_2256 REXdb_ID10284 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2257_rc REXdb_ID11201 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2258_rc REXdb_ID10027 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2259 REXdb_ID10402 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2260 REXdb_ID11079 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTG not tested Ppatens251_2261 REXdb_ID10285 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2263_rc REXdb_ID6485 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTGCCGGGGAA (tRNA-Asp) - not tested Ppatens251_2264_rc REXdb_ID9911 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2265 REXdb_ID5532 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCAACGTGAA (tRNA-Trp) - not tested Ppatens251_2266_rc REXdb_ID10017 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2267 REXdb_ID10667 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2268_rc REXdb_ID10217 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2269_rc REXdb_ID5487 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_227 REXdb_ID10235 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2270_rc REXdb_ID5616 Ty3/gypsy_CL081 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGCTTCCACTGAGAG (tRNA-Thr) - not tested Ppatens251_2272 REXdb_ID9967 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2273 REXdb_ID10403 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2274_rc REXdb_ID10202 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2276_rc REXdb_ID10050 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2277_rc REXdb_ID10150 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2278 REXdb_ID10164 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2279_rc REXdb_ID10755 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_228_rc REXdb_ID10243 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2281 REXdb_ID6682 Ty3/gypsy_CL144 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGCGTTAGCCGGGAG (tRNA-Gly) - not tested Ppatens251_2283_rc REXdb_ID10218 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2284_rc REXdb_ID11138 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2285 REXdb_ID10349 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2286 REXdb_ID10134 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2287_rc REXdb_ID10307 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2288 REXdb_ID6463 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_2290_rc REXdb_ID10308 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2291 REXdb_ID10566 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2292_rc REXdb_ID11189 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2293 REXdb_ID10961 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2294_rc REXdb_ID5490 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_2296 REXdb_ID5542 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACATGAA (tRNA-Trp) - not tested Ppatens251_2297 REXdb_ID11025 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2298 REXdb_ID10378 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2299 REXdb_ID9891 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_23_rc REXdb_ID11052 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_2301 REXdb_ID10454 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_2304 REXdb_ID11202 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2306 REXdb_ID6489 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_2307_rc REXdb_ID10350 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2308_rc REXdb_ID10165 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2309_rc REXdb_ID11225 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_231 REXdb_ID10244 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2310_rc REXdb_ID10478 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_2311_rc REXdb_ID10506 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2312 REXdb_ID10991 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2313 REXdb_ID10939 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATAAGAGT not tested Ppatens251_2314_rc REXdb_ID5520 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGAC (tRNA-Trp) - not tested Ppatens251_2316 REXdb_ID10351 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2318 REXdb_ID6523 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTGCCGGGGAA (tRNA-Asp) - not tested Ppatens251_2319 REXdb_ID10889 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_232 REXdb_ID10203 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2320_rc REXdb_ID6516 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTGCC (tRNA-Asp) - not tested Ppatens251_2322 REXdb_ID10204 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_2323_rc REXdb_ID10567 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2324_rc REXdb_ID10988 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTG not tested Ppatens251_2325 REXdb_ID9859 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2326 REXdb_ID2623 Ty1/copia_CL170 (6) Class_I::LTR::Ty1/copia::Bryco + + + + + - - - - - - - 5 TGGGCCCACATT (tRNA-?) - GGTTATGGGCCCACA (tRNA-Met) Ppatens251_2327_rc REXdb_ID10568 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2328_rc REXdb_ID10219 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2329 REXdb_ID5619 Ty3/gypsy_CL628 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 - - not tested Ppatens251_233 REXdb_ID10626 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2330 REXdb_ID6521 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTGCTGGGGA (tRNA-Asp) - not tested Ppatens251_2334_rc REXdb_ID10595 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2335_rc REXdb_ID10856 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2337_rc REXdb_ID11026 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_2339_rc REXdb_ID10975 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2340 REXdb_ID10569 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2342_rc REXdb_ID10404 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2343_rc REXdb_ID5516 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_2344 REXdb_ID10904 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2345 REXdb_ID10405 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2346 REXdb_ID11237 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2348 REXdb_ID5586 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_235 REXdb_ID11045 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_2350 REXdb_ID10681 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2351_rc REXdb_ID10828 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2353 REXdb_ID5575 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_2354 REXdb_ID6484 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_2355_rc REXdb_ID10309 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2356 REXdb_ID9832 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2357 REXdb_ID10379 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2358 REXdb_ID10077 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2359_rc REXdb_ID9918 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2360 REXdb_ID10352 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 4 - - not tested Ppatens251_2362 REXdb_ID5544 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCTGACGTAAA (tRNA-Trp) - not tested Ppatens251_2363 REXdb_ID10109 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_2364 REXdb_ID10682 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2365_rc REXdb_ID10166 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - ATTGACAAGAGT not tested Ppatens251_2366_rc REXdb_ID10596 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2367 REXdb_ID10886 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2368 REXdb_ID6509 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGTGCCGCTGT (tRNA-?) - not tested Ppatens251_2369 REXdb_ID6466 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_237_rc REXdb_ID10220 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2370_rc REXdb_ID9986 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTA not tested Ppatens251_2371 REXdb_ID11010 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2372 REXdb_ID10783 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_2373 REXdb_ID10958 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2374 REXdb_ID10310 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2375_rc REXdb_ID10716 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2376_rc REXdb_ID10087 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_2377_rc REXdb_ID11063 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_2378_rc REXdb_ID11103 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_2379_rc REXdb_ID10849 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_238 REXdb_ID10406 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2380_rc REXdb_ID10051 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_2381 REXdb_ID10649 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - GATTGACAAGA not tested Ppatens251_239 REXdb_ID10810 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_24_rc REXdb_ID10063 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_240 REXdb_ID10078 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_241_rc REXdb_ID11151 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_242_rc REXdb_ID10861 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_243 REXdb_ID10167 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_244_rc REXdb_ID11104 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_245 REXdb_ID10188 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_247 REXdb_ID10093 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_248 REXdb_ID9825 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_249_rc REXdb_ID10905 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_250_rc REXdb_ID10897 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_251 REXdb_ID10245 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_252 REXdb_ID10267 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_254_rc REXdb_ID10028 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_255_rc REXdb_ID10597 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_256 REXdb_ID5553 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_257 REXdb_ID11046 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Ppatens251_26_rc REXdb_ID10311 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_260_rc REXdb_ID5477 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAATCCGACGTGAA (tRNA-Trp) - not tested Ppatens251_261_rc REXdb_ID10549 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_262 REXdb_ID10935 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_263 REXdb_ID10455 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_265 REXdb_ID10640 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_266_rc REXdb_ID11190 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_267 REXdb_ID11257 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_268 REXdb_ID10903 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_269_rc REXdb_ID9968 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTA not tested Ppatens251_27_rc REXdb_ID10683 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_270 REXdb_ID11213 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_271_rc REXdb_ID10428 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_273 REXdb_ID10246 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_275 REXdb_ID10550 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_276_rc REXdb_ID10189 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_278 REXdb_ID6476 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_279 REXdb_ID11101 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_28_rc REXdb_ID9992 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_280 REXdb_ID10973 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_281_rc REXdb_ID5591 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_282 REXdb_ID9969 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_283_rc REXdb_ID9932 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_284_rc REXdb_ID11143 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTG not tested Ppatens251_285 REXdb_ID11043 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_286_rc REXdb_ID10704 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_287 REXdb_ID9987 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_288 REXdb_ID11181 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTA not tested Ppatens251_289 REXdb_ID9991 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_292 REXdb_ID9941 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_293 REXdb_ID10742 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_294_rc REXdb_ID11100 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_295 REXdb_ID10018 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_296_rc REXdb_ID9952 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_297 REXdb_ID9961 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_298 REXdb_ID10010 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_299_rc REXdb_ID10135 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_3_rc REXdb_ID5491 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_30 REXdb_ID11236 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_300 REXdb_ID10917 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_301_rc REXdb_ID10353 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_302 REXdb_ID10122 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_303 REXdb_ID10598 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_304 REXdb_ID11032 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_305_rc REXdb_ID5598 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_306 REXdb_ID10950 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_307 REXdb_ID5524 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_308_rc REXdb_ID10312 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_309_rc REXdb_ID10221 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_31 REXdb_ID10268 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_310_rc REXdb_ID9982 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_311 REXdb_ID10599 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_312_rc REXdb_ID6451 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTGCC (tRNA-Asp) - not tested Ppatens251_313 REXdb_ID9852 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_314 REXdb_ID10190 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_315_rc REXdb_ID9866 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_316_rc REXdb_ID10222 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_317 REXdb_ID9962 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_32_rc REXdb_ID5525 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCAATGTGAAA (tRNA-Sup) - not tested Ppatens251_320_rc REXdb_ID6490 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_321 REXdb_ID10191 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_323_rc REXdb_ID10223 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_324_rc REXdb_ID10136 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_325_rc REXdb_ID10456 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_326_rc REXdb_ID10951 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - ATTGACAAGAGT not tested Ppatens251_327 REXdb_ID9860 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_328 REXdb_ID10224 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_329_rc REXdb_ID10313 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_33_rc REXdb_ID9887 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_330_rc REXdb_ID10479 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_332 REXdb_ID10570 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_333 REXdb_ID10407 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_334_rc REXdb_ID10507 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_335_rc REXdb_ID10994 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_337_rc REXdb_ID5452 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_338_rc REXdb_ID10878 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAAT not tested Ppatens251_339 REXdb_ID11155 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_340_rc REXdb_ID10705 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_342 REXdb_ID10641 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_343_rc REXdb_ID10110 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_344 REXdb_ID11131 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTA not tested Ppatens251_345 REXdb_ID10867 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_346_rc REXdb_ID10099 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_347 REXdb_ID5547 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_348_rc REXdb_ID10247 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_349 REXdb_ID10225 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - ATTGACAAGAGT not tested Ppatens251_35 REXdb_ID5539 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_350_rc REXdb_ID9853 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_353_rc REXdb_ID11134 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_354 REXdb_ID6766 Ty3/gypsy_CL629 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCTCCACTGC (tRNA-Asp) - not tested Ppatens251_356_rc REXdb_ID11033 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_357 REXdb_ID11068 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_358_rc REXdb_ID10168 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - GTTGACAAGAGT not tested Ppatens251_359 REXdb_ID10286 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_36 REXdb_ID11000 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_360 REXdb_ID10508 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_362_rc REXdb_ID10571 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_363 REXdb_ID10668 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_365_rc REXdb_ID10408 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_366 REXdb_ID5580 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAATCCGACGTGAA (tRNA-Trp) - not tested Ppatens251_37 REXdb_ID5583 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_370 REXdb_ID11022 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_373_rc REXdb_ID6503 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGGGTCGCTGC (tRNA-?) - not tested Ppatens251_374 REXdb_ID10151 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_375_rc REXdb_ID10429 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_376 REXdb_ID10152 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_377_rc REXdb_ID10457 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_378 REXdb_ID10192 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_38_rc REXdb_ID10480 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_381 REXdb_ID9983 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_382 REXdb_ID9933 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_383 REXdb_ID10808 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_384 REXdb_ID10430 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_388_rc REXdb_ID11005 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_39 REXdb_ID10880 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_390_rc REXdb_ID10834 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_391 REXdb_ID5543 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_392 REXdb_ID10001 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_393_rc REXdb_ID10977 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_394_rc REXdb_ID10052 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_395 REXdb_ID10551 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_396_rc REXdb_ID11231 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTG not tested Ppatens251_398_rc REXdb_ID10079 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_399 REXdb_ID5526 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_4 REXdb_ID10942 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_40_rc REXdb_ID10380 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_400 REXdb_ID11004 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_401 REXdb_ID10153 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_402 REXdb_ID5558 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAATTCGACGTGAA (tRNA-Sup) - not tested Ppatens251_405_rc REXdb_ID10836 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_406 REXdb_ID5603 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGAGAACCCGA (tRNA-?) - not tested Ppatens251_408 REXdb_ID10431 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_409_rc REXdb_ID10727 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_41_rc REXdb_ID10432 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_410 REXdb_ID5459 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACATGAA (tRNA-Trp) - not tested Ppatens251_411_rc REXdb_ID10481 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_412_rc REXdb_ID10458 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_413 REXdb_ID5545 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCAAGGTGAA (tRNA-Trp) - not tested Ppatens251_414_rc REXdb_ID10864 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_415_rc REXdb_ID10053 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_417 REXdb_ID10627 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_418 REXdb_ID5501 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_419 REXdb_ID9963 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_42 REXdb_ID10226 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_421_rc REXdb_ID5471 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_422_rc REXdb_ID5521 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_423_rc REXdb_ID5607 Ty3/gypsy_CL081 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGCTTCCACTGAGAG (tRNA-Thr) - not tested Ppatens251_425_rc REXdb_ID9934 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_426 REXdb_ID10137 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_427_rc REXdb_ID11139 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_428 REXdb_ID10314 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_429 REXdb_ID11167 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_43_rc REXdb_ID10269 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_430 REXdb_ID10482 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_432 REXdb_ID5517 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGAAGTGAA (tRNA-Trp) - not tested Ppatens251_433 REXdb_ID11097 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_436 REXdb_ID6464 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_438_rc REXdb_ID10853 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_439 REXdb_ID11080 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_44 REXdb_ID10998 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_440_rc REXdb_ID11023 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_441 REXdb_ID10315 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_442_rc REXdb_ID10650 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_443 REXdb_ID11064 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_444 REXdb_ID10029 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_446 REXdb_ID10381 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_448 REXdb_ID5462 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_45 REXdb_ID9912 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_450_rc REXdb_ID10841 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_452 REXdb_ID11047 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_453 REXdb_ID11172 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_454 REXdb_ID10509 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_455_rc REXdb_ID10771 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_456 REXdb_ID9919 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_459 REXdb_ID9920 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_46_rc REXdb_ID10895 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_460 REXdb_ID10717 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_461 REXdb_ID10118 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_462 REXdb_ID10971 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTG not tested Ppatens251_464 REXdb_ID10874 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_465 REXdb_ID10718 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_466 REXdb_ID5472 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_467 REXdb_ID9867 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_468_rc REXdb_ID5463 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_469 REXdb_ID11081 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_47 REXdb_ID10433 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_470_rc REXdb_ID10706 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_471 REXdb_ID10920 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_472 REXdb_ID10894 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_474 REXdb_ID10483 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - ATTGACAAGAGT not tested Ppatens251_477 REXdb_ID10989 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_478_rc REXdb_ID11095 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_479_rc REXdb_ID6467 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_48 REXdb_ID5548 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_481_rc REXdb_ID9837 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_483 REXdb_ID5481 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_485 REXdb_ID10193 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_486 REXdb_ID10484 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_488 REXdb_ID10030 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_489_rc REXdb_ID10459 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_490_rc REXdb_ID9993 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_491 REXdb_ID10642 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_492_rc REXdb_ID10756 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_493_rc REXdb_ID10227 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_494 REXdb_ID9854 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_495 REXdb_ID10236 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_496_rc REXdb_ID10434 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_497 REXdb_ID10600 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_498_rc REXdb_ID10435 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_499_rc REXdb_ID10510 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_5 REXdb_ID10485 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_50 REXdb_ID10765 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_501 REXdb_ID11208 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_502 REXdb_ID6448 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTGCCGGGGATTGA (tRNA-Asp) - not tested Ppatens251_503_rc REXdb_ID6444 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTGCCGGGGATTGA (tRNA-Asp) - not tested Ppatens251_505 REXdb_ID5595 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_506_rc REXdb_ID5482 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACATGAA (tRNA-Trp) - not tested Ppatens251_507_rc REXdb_ID10270 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_508 REXdb_ID9838 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_509_rc REXdb_ID10572 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_510 REXdb_ID9899 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_511_rc REXdb_ID9878 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_512 REXdb_ID10995 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_513_rc REXdb_ID10316 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_514 REXdb_ID10228 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_515_rc REXdb_ID10436 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_516 REXdb_ID5467 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_517 REXdb_ID10002 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_519_rc REXdb_ID11226 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTG not tested Ppatens251_52 REXdb_ID10330 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_520 REXdb_ID10138 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 4 - - not tested Ppatens251_521 REXdb_ID10139 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_522 REXdb_ID10003 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_523_rc REXdb_ID10695 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_525_rc REXdb_ID10669 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_526_rc REXdb_ID5512 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCTGACGTGAA (tRNA-Trp) - not tested Ppatens251_527_rc REXdb_ID5464 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_528 REXdb_ID10004 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_529_rc REXdb_ID10966 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTG not tested Ppatens251_530_rc REXdb_ID10437 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_531_rc REXdb_ID6452 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGATTGA (tRNA-Asp) - not tested Ppatens251_532 REXdb_ID10248 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_533 REXdb_ID10651 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_534_rc REXdb_ID10941 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_535_rc REXdb_ID9847 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_536 REXdb_ID6501 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTGCCGGGGA (tRNA-Asp) - not tested Ppatens251_537 REXdb_ID9841 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_538_rc REXdb_ID9839 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_539 REXdb_ID6522 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTGCCGAGGA (tRNA-Asp) - not tested Ppatens251_54_rc REXdb_ID5439 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_540 REXdb_ID9970 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_541 REXdb_ID10652 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_542_rc REXdb_ID5518 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_544_rc REXdb_ID10194 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_545 REXdb_ID10956 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_546_rc REXdb_ID10757 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_547 REXdb_ID11075 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_548 REXdb_ID11082 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_549_rc REXdb_ID10986 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_55_rc REXdb_ID10064 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_551_rc REXdb_ID10287 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_552_rc REXdb_ID10382 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_553 REXdb_ID10288 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_554 REXdb_ID10990 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_555 REXdb_ID5492 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_556 REXdb_ID10331 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_558_rc REXdb_ID10601 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_560 REXdb_ID10460 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_561 REXdb_ID9913 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_562 REXdb_ID10317 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_563 REXdb_ID10526 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_565 REXdb_ID11156 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_567 REXdb_ID10866 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_568 REXdb_ID9873 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_57 REXdb_ID11126 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_570 REXdb_ID10728 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_571 REXdb_ID5537 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 - - not tested Ppatens251_573 REXdb_ID9921 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_574_rc REXdb_ID10229 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_575_rc REXdb_ID5578 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACTCGA (tRNA-Trp) - not tested Ppatens251_576 REXdb_ID10858 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_577 REXdb_ID10046 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_578 REXdb_ID10019 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_579 REXdb_ID10729 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_58_rc REXdb_ID9942 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_580_rc REXdb_ID10527 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_581_rc REXdb_ID10332 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_582 REXdb_ID10736 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_583 REXdb_ID10438 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_584_rc REXdb_ID10719 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_585 REXdb_ID10552 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_586_rc REXdb_ID10511 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_587_rc REXdb_ID11209 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTG not tested Ppatens251_588 REXdb_ID10230 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_589_rc REXdb_ID10333 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_59 REXdb_ID10169 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_590_rc REXdb_ID10020 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_591_rc REXdb_ID5496 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_592_rc REXdb_ID10653 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_593 REXdb_ID10486 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_594 REXdb_ID5493 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_595 REXdb_ID10354 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_596 REXdb_ID10271 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_598_rc REXdb_ID11186 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_599_rc REXdb_ID10758 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_6 REXdb_ID11177 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_60 REXdb_ID10383 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_600 REXdb_ID10772 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_601 REXdb_ID10885 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_602_rc REXdb_ID10289 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_603 REXdb_ID10684 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_604_rc REXdb_ID11009 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_605_rc REXdb_ID11168 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_606 REXdb_ID11227 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_607 REXdb_ID6482 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_608 REXdb_ID10170 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_609 REXdb_ID10654 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_61_rc REXdb_ID11188 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_612 REXdb_ID5554 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 - - not tested Ppatens251_615 REXdb_ID5602 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAATCCGACGTGAA (tRNA-Trp) - not tested Ppatens251_616 REXdb_ID10272 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_617 REXdb_ID10512 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_618_rc REXdb_ID10984 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTG not tested Ppatens251_619_rc REXdb_ID10655 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_62_rc REXdb_ID10528 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_620 REXdb_ID10794 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_622 REXdb_ID11048 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_629 REXdb_ID10171 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_63_rc REXdb_ID11044 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_632_rc REXdb_ID6685 Ty3/gypsy_CL144 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGCGTTTGCCTGGAG (tRNA-Gly) - not tested Ppatens251_633_rc REXdb_ID5604 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 - - not tested Ppatens251_634 REXdb_ID10080 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_635_rc REXdb_ID10172 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_636 REXdb_ID10140 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_637 REXdb_ID10355 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_638 REXdb_ID10273 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_639_rc REXdb_ID11096 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_64 REXdb_ID6505 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTGTCGGGGA (tRNA-Asp) - not tested Ppatens251_642 REXdb_ID10602 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_644 REXdb_ID5513 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_645 REXdb_ID10603 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_646 REXdb_ID5519 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_647 REXdb_ID11173 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_648_rc REXdb_ID10529 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_65_rc REXdb_ID10237 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_650 REXdb_ID10643 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_651_rc REXdb_ID10173 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_652_rc REXdb_ID10795 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_653 REXdb_ID10334 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_654 REXdb_ID10513 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_656_rc REXdb_ID10790 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_657_rc REXdb_ID10890 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_658 REXdb_ID10174 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_659_rc REXdb_ID9829 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_66 REXdb_ID10514 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_660_rc REXdb_ID10553 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_661_rc REXdb_ID10231 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_662_rc REXdb_ID10604 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_663_rc REXdb_ID10992 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_664_rc REXdb_ID11053 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_665 REXdb_ID11111 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_669 REXdb_ID2624 Ty1/copia_CL170 (6) Class_I::LTR::Ty1/copia::Bryco + + + + + - - - - - - - 5 - - GGTTACGGGCCCACAC (tRNA-Met) Ppatens251_67_rc REXdb_ID10685 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_670_rc REXdb_ID9892 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_671 REXdb_ID10803 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_672 REXdb_ID10094 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_673_rc REXdb_ID10784 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_674_rc REXdb_ID10720 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGGAAGAGTAC (tRNA-?) - not tested Ppatens251_675_rc REXdb_ID10318 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_676 REXdb_ID10175 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_678 REXdb_ID6507 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - not tested not tested 5 TGGCGCCGCTGTCGGGGA (tRNA-Asp) - not tested Ppatens251_679_rc REXdb_ID10409 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_68 REXdb_ID11117 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_680 REXdb_ID5494 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_681 REXdb_ID11232 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_683 REXdb_ID10887 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_684 REXdb_ID10249 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_685 REXdb_ID5612 Ty3/gypsy_CL081 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGCTTCCACTGAGAG (tRNA-Thr) - not tested Ppatens251_686 REXdb_ID5479 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_687_rc REXdb_ID10656 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_688 REXdb_ID6458 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_689 REXdb_ID10123 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_690_rc REXdb_ID10319 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_691_rc REXdb_ID10721 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_692_rc REXdb_ID10250 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_693 REXdb_ID10195 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_694_rc REXdb_ID11094 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_696_rc REXdb_ID9994 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - ATTGACAAGAGT not tested Ppatens251_697_rc REXdb_ID10554 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_698 REXdb_ID10356 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_7 REXdb_ID9922 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_70 REXdb_ID9888 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_700 REXdb_ID10976 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTGAA not tested Ppatens251_701 REXdb_ID5442 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_702 REXdb_ID9826 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_703_rc REXdb_ID10335 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_704_rc REXdb_ID10005 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_705 REXdb_ID10384 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_706 REXdb_ID9848 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_707 REXdb_ID10974 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_709_rc REXdb_ID9855 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_71 REXdb_ID10686 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_710 REXdb_ID9868 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_711 REXdb_ID5588 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 - - not tested Ppatens251_712_rc REXdb_ID10290 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_713_rc REXdb_ID10628 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_714_rc REXdb_ID10811 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_715_rc REXdb_ID5468 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_716 REXdb_ID11108 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_717 REXdb_ID10969 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_718_rc REXdb_ID10812 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_719 REXdb_ID10670 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_72 REXdb_ID10154 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_720_rc REXdb_ID6454 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTGCCGGGAA (tRNA-Asp) - not tested Ppatens251_722_rc REXdb_ID10707 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_723 REXdb_ID10813 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_724 REXdb_ID5533 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_727 REXdb_ID10737 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_728_rc REXdb_ID10873 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_729_rc REXdb_ID5549 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGATCCCGA (tRNA-?) - not tested Ppatens251_73 REXdb_ID9900 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_730 REXdb_ID10766 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_731 REXdb_ID5483 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCAATGTGAAA (tRNA-Sup) - not tested Ppatens251_732 REXdb_ID11091 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_734_rc REXdb_ID10629 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_735_rc REXdb_ID11012 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACT not tested Ppatens251_736_rc REXdb_ID10205 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_737_rc REXdb_ID10251 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_738_rc REXdb_ID10410 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_74 REXdb_ID6494 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTGCCGGGGA (tRNA-Asp) - not tested Ppatens251_740 REXdb_ID11163 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_742 REXdb_ID10978 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - - - - - - - 5 - TTGTCGAGACT not tested Ppatens251_743 REXdb_ID5508 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_744 REXdb_ID10487 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_745_rc REXdb_ID10814 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_746 REXdb_ID11105 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATTAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_749_rc REXdb_ID10898 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_75_rc REXdb_ID11255 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_750_rc REXdb_ID10385 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_751_rc REXdb_ID2625 Ty1/copia_CL170 (6) Class_I::LTR::Ty1/copia::Bryco + + + + + - - - - - - - 5 TGGGCCCACACA (tRNA-?) - GGTTATGGGCCCACAC (tRNA-Met) Ppatens251_752_rc REXdb_ID10815 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_753 REXdb_ID10738 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_754 REXdb_ID10141 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_756_rc REXdb_ID5497 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCTGACGTGAA (tRNA-Trp) - not tested Ppatens251_757 REXdb_ID10605 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_759 REXdb_ID10796 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_76 REXdb_ID9953 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_760 REXdb_ID10883 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_761_rc REXdb_ID10021 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_764_rc REXdb_ID11069 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_765 REXdb_ID6684 Ty3/gypsy_CL144 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGCGTTTGCCGAGAG (tRNA-Gly) - not tested Ppatens251_766_rc REXdb_ID11102 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - not tested not tested 5 - - not tested Ppatens251_767 REXdb_ID11070 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Ppatens251_769_rc REXdb_ID11233 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_77 REXdb_ID10868 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_770 REXdb_ID10206 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_771_rc REXdb_ID11169 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_772 REXdb_ID10773 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_773_rc REXdb_ID10630 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_774_rc REXdb_ID10054 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_775_rc REXdb_ID11230 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_776 REXdb_ID9869 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_777 REXdb_ID10065 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_779_rc REXdb_ID10066 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_78_rc REXdb_ID11217 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGGCTG not tested Ppatens251_780 REXdb_ID11203 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_781_rc REXdb_ID10067 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_782 REXdb_ID10176 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_783_rc REXdb_ID5560 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_784 REXdb_ID11071 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_785 REXdb_ID10631 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_786_rc REXdb_ID10196 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_787 REXdb_ID5534 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_788_rc REXdb_ID10274 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_789 REXdb_ID10111 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_79 REXdb_ID10357 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_791 REXdb_ID10055 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_793_rc REXdb_ID5600 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGCGAACCCGACGTGAA (tRNA-SeC) - not tested Ppatens251_794_rc REXdb_ID11019 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_796 REXdb_ID9964 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_798_rc REXdb_ID10708 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_799 REXdb_ID6515 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGAGTGTTAGGTAT (tRNA-Ala) - not tested Ppatens251_80_rc REXdb_ID5522 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_800_rc REXdb_ID10997 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_802_rc REXdb_ID9914 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_803 REXdb_ID10386 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_805 REXdb_ID11195 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_806 REXdb_ID11235 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_807 REXdb_ID11182 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_808 REXdb_ID10696 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_81 REXdb_ID10767 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGCAAGAGTAC (tRNA-SeC) - not tested Ppatens251_810 REXdb_ID10687 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_811 REXdb_ID9965 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_812 REXdb_ID9893 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_813 REXdb_ID10926 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_815 REXdb_ID11034 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_816_rc REXdb_ID10606 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_817_rc REXdb_ID10439 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_819_rc REXdb_ID5504 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_82 REXdb_ID10252 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_822 REXdb_ID9879 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_823 REXdb_ID9856 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_824_rc REXdb_ID10671 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_826_rc REXdb_ID5443 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_827_rc REXdb_ID10785 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_828 REXdb_ID10607 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_829 REXdb_ID10177 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_83 REXdb_ID5606 Ty3/gypsy_CL081 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGCTTCCACTGAGAG (tRNA-Thr) - not tested Ppatens251_831 REXdb_ID10100 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_832_rc REXdb_ID10632 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_834 REXdb_ID10440 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_835_rc REXdb_ID10197 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_836_rc REXdb_ID11123 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_837 REXdb_ID9901 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_838 REXdb_ID10911 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_839 REXdb_ID10820 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_84 REXdb_ID10461 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_840_rc REXdb_ID11115 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_841_rc REXdb_ID5615 Ty3/gypsy_CL081 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGCTTCCACT (tRNA-Thr) - not tested Ppatens251_842_rc REXdb_ID10031 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_843 REXdb_ID10672 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_844_rc REXdb_ID10843 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_846_rc REXdb_ID6468 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_847 REXdb_ID9842 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_848_rc REXdb_ID10530 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_849 REXdb_ID10633 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_85 REXdb_ID9988 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_850_rc REXdb_ID10253 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_851_rc REXdb_ID5597 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 - - not tested Ppatens251_852 REXdb_ID5566 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_853_rc REXdb_ID10232 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_855 REXdb_ID9902 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_856_rc REXdb_ID10927 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_857_rc REXdb_ID10462 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_858 REXdb_ID10411 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_86 REXdb_ID11132 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_860 REXdb_ID10947 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 4 - - not tested Ppatens251_864_rc REXdb_ID6460 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGAGTGTTAGGT (tRNA-Ala) - not tested Ppatens251_865_rc REXdb_ID10320 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_866 REXdb_ID5617 Ty3/gypsy_CL081 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 - - not tested Ppatens251_867 REXdb_ID9880 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_868 REXdb_ID10112 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_869 REXdb_ID10387 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_87 REXdb_ID5559 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGATGTGAA (tRNA-Trp) - not tested Ppatens251_870 REXdb_ID6440 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCACCGCTGC (tRNA-Asp) - not tested Ppatens251_872 REXdb_ID10829 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_873 REXdb_ID10730 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_874 REXdb_ID10488 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_875_rc REXdb_ID10608 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_876_rc REXdb_ID10786 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_877 REXdb_ID9857 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_878_rc REXdb_ID11248 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_879_rc REXdb_ID11178 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_88_rc REXdb_ID10489 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_881_rc REXdb_ID10068 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_882_rc REXdb_ID10657 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_883_rc REXdb_ID10609 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_884 REXdb_ID10743 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_885_rc REXdb_ID10358 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_886 REXdb_ID11204 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_888_rc REXdb_ID10081 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_889 REXdb_ID11116 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACTG not tested Ppatens251_89_rc REXdb_ID5568 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_890_rc REXdb_ID10804 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_891_rc REXdb_ID10142 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_892 REXdb_ID11133 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_893 REXdb_ID10863 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_894 REXdb_ID10993 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGTCGAGACT not tested Ppatens251_895_rc REXdb_ID11222 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_896_rc REXdb_ID9833 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_897 REXdb_ID11220 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_898 REXdb_ID11159 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_9_rc REXdb_ID5556 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_900_rc REXdb_ID10688 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_901 REXdb_ID6511 Ty3/gypsy_CL020 (89) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGTGCCGCTGCCGGGGA (tRNA-Asp) - not tested Ppatens251_902 REXdb_ID10143 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_903 REXdb_ID10658 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGTG not tested Ppatens251_904 REXdb_ID10490 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_906 REXdb_ID5540 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTGAAA (tRNA-Trp) - not tested Ppatens251_907 REXdb_ID5527 Ty3/gypsy_CL010 (171) Class_I::LTR::Ty3/gypsy::non-chromovirus::Phygy + + + + + - - - - - - - 4 TGGTGAACCCGACGTAAA (tRNA-Trp) - not tested Ppatens251_908 REXdb_ID11092 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) TTGTCGAGACTG not tested Ppatens251_91 REXdb_ID10872 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_93 REXdb_ID10709 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Ppatens251_94_rc REXdb_ID9943 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_95 REXdb_ID10531 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_96 REXdb_ID10022 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_97 REXdb_ID10359 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_98_rc REXdb_ID9971 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppatens251_99 REXdb_ID10388 Ty3/gypsy_CL001 (1437) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGACAAGAGT not tested Ppersica139_100 REXdb_ID752 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Ppersica139_101 REXdb_ID753 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_104_rc REXdb_ID11812 Ty3/gypsy_CL087 (11) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_105_rc REXdb_ID2564 Ty1/copia_CL046 (21) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Ppersica139_108_rc REXdb_ID2565 Ty1/copia_CL046 (21) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Ppersica139_109_rc REXdb_ID754 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_111 REXdb_ID755 Ty1/copia_CL285 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCC (tRNA-Met) - not tested Ppersica139_113_rc REXdb_ID3457 Ty1/copia_CL034 (25) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_115 REXdb_ID7492 Ty3/gypsy_CL062 (17) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGATT (tRNA-Arg) - not tested Ppersica139_117_rc REXdb_ID3458 Ty1/copia_CL034 (25) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_126_rc REXdb_ID756 Ty1/copia_CL578 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ppersica139_135 REXdb_ID6698 Ty3/gypsy_CL172 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTGCCGGGGA (tRNA-Asp) - not tested Ppersica139_136 REXdb_ID9476 Ty3/gypsy_CL047 (24) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTACTTTCATTGAGAG (tRNA-Thr) - not tested Ppersica139_139 REXdb_ID3459 Ty1/copia_CL034 (25) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 4 - - not tested Ppersica139_14 REXdb_ID757 Ty1/copia_CL091 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Ppersica139_143 REXdb_ID7499 Ty3/gypsy_CL062 (17) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + + - - 5 TGGCACGCCCAGTGGGACTT (tRNA-Arg) - not tested Ppersica139_145 REXdb_ID9522 Ty3/gypsy_CL055 (20) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 - - not tested Ppersica139_147_rc REXdb_ID2566 Ty1/copia_CL046 (21) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Ppersica139_148_rc REXdb_ID3460 Ty1/copia_CL034 (25) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_149_rc REXdb_ID758 Ty1/copia_CL215 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ppersica139_151_rc REXdb_ID759 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_152 REXdb_ID760 Ty1/copia_CL579 (2) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATTAGAGCAA (tRNA-Met) - not tested Ppersica139_154 REXdb_ID3461 Ty1/copia_CL039 (23) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_158 REXdb_ID7501 Ty3/gypsy_CL062 (17) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + + - - 5 TGGCACGCCCAGTGGGACTT (tRNA-Arg) - not tested Ppersica139_162_rc REXdb_ID761 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ppersica139_163 REXdb_ID2888 Ty1/copia_CL408 (3) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ppersica139_165_rc REXdb_ID7604 Ty3/gypsy_CL630 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCGACTCTGCTGGGGA (tRNA-Arg) - not tested Ppersica139_166 REXdb_ID5263 Ty1/copia_CL166 (6) Class_I::LTR::Ty1/copia::Tork - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ppersica139_17_rc REXdb_ID3463 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Ppersica139_170_rc REXdb_ID3462 Ty1/copia_CL039 (23) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_172_rc REXdb_ID11944 Ty3/gypsy_CL300 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 4 TGGTATTCAGAG (tRNA-?) - not tested Ppersica139_173_rc REXdb_ID7505 Ty3/gypsy_CL062 (17) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGACTT (tRNA-Arg) - not tested Ppersica139_176 REXdb_ID762 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_178_rc REXdb_ID9497 Ty3/gypsy_CL047 (24) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGTGCTTTCATTGAGAGC (tRNA-Thr) - not tested Ppersica139_181_rc REXdb_ID6666 Ty3/gypsy_CL136 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTGCCGGGGA (tRNA-Asp) - not tested Ppersica139_183 REXdb_ID2567 Ty1/copia_CL046 (21) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Ppersica139_188_rc REXdb_ID3464 Ty1/copia_CL047 (21) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_19_rc REXdb_ID3466 Ty1/copia_CL039 (23) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_192 REXdb_ID763 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_195_rc REXdb_ID3465 Ty1/copia_CL039 (23) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_197 REXdb_ID13544 Ty3/gypsy_CL330 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGGCATGGAGG (tRNA-His) - not tested Ppersica139_199 REXdb_ID764 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Ppersica139_205 REXdb_ID9541 Ty3/gypsy_CL055 (20) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGAAATCGAA (tRNA-Lys) - not tested Ppersica139_208 REXdb_ID3467 Ty1/copia_CL101 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCGAGAG (tRNA-?) - not tested Ppersica139_209_rc REXdb_ID7570 Ty3/gypsy_CL116 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Ppersica139_210_rc REXdb_ID9496 Ty3/gypsy_CL047 (24) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTGATTTCAT (tRNA-?) - not tested Ppersica139_214 REXdb_ID765 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_215 REXdb_ID5264 Ty1/copia_CL166 (6) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ppersica139_216_rc REXdb_ID9528 Ty3/gypsy_CL055 (20) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGAAATCGAA (tRNA-Lys) - not tested Ppersica139_218 REXdb_ID3468 Ty1/copia_CL039 (23) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAAAGC (tRNA-?) - not tested Ppersica139_22_rc REXdb_ID7493 Ty3/gypsy_CL062 (17) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGACTT (tRNA-Arg) - not tested Ppersica139_222_rc REXdb_ID766 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_223_rc REXdb_ID13044 Ty3/gypsy_CL178 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ppersica139_239 REXdb_ID3469 Ty1/copia_CL047 (21) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCACTGA (tRNA-?) - not tested Ppersica139_240 REXdb_ID767 Ty1/copia_CL098 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Ppersica139_251 REXdb_ID9484 Ty3/gypsy_CL047 (24) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTGCTTTCATTGAGAGT (tRNA-Thr) - not tested Ppersica139_254 REXdb_ID9524 Ty3/gypsy_CL055 (20) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Ppersica139_255_rc REXdb_ID768 Ty1/copia_CL091 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Ppersica139_256_rc REXdb_ID769 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_265 REXdb_ID770 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGTA (tRNA-Met) - not tested Ppersica139_267_rc REXdb_ID3470 Ty1/copia_CL034 (25) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_269 REXdb_ID9536 Ty3/gypsy_CL055 (20) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTTGGGAATC (tRNA-Undet) - not tested Ppersica139_271 REXdb_ID4779 Ty1/copia_CL171 (6) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 4 - - not tested Ppersica139_272 REXdb_ID9523 Ty3/gypsy_CL055 (20) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Ppersica139_274_rc REXdb_ID3471 Ty1/copia_CL580 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Ppersica139_277_rc REXdb_ID771 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_28_rc REXdb_ID2568 Ty1/copia_CL046 (21) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAA (tRNA-Ile) Ppersica139_280 REXdb_ID7572 Ty3/gypsy_CL116 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCGGTGGGAT (tRNA-Arg) - not tested Ppersica139_288_rc REXdb_ID12311 Ty3/gypsy_CL331 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCGA (tRNA-Met) - not tested Ppersica139_292_rc REXdb_ID7592 Ty3/gypsy_CL238 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCGGTGGGAT (tRNA-Arg) - not tested Ppersica139_30_rc REXdb_ID5266 Ty1/copia_CL360 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ppersica139_300_rc REXdb_ID772 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_304_rc REXdb_ID773 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_305_rc REXdb_ID9538 Ty3/gypsy_CL055 (20) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTTGGGAATC (tRNA-Undet) - not tested Ppersica139_307_rc REXdb_ID2569 Ty1/copia_CL046 (21) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Ppersica139_309 REXdb_ID5265 Ty1/copia_CL063 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ppersica139_315 REXdb_ID9480 Ty3/gypsy_CL047 (24) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTGCTTTCATTGAGAGC (tRNA-Thr) - not tested Ppersica139_316_rc REXdb_ID3472 Ty1/copia_CL039 (23) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_317 REXdb_ID774 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATTAGAGCG (tRNA-Met) - not tested Ppersica139_321_rc REXdb_ID775 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_322_rc REXdb_ID3473 Ty1/copia_CL039 (23) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_324_rc REXdb_ID9483 Ty3/gypsy_CL047 (24) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTGCTTTCATTGAGAGC (tRNA-Thr) - not tested Ppersica139_325 REXdb_ID3474 Ty1/copia_CL047 (21) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_326_rc REXdb_ID9531 Ty3/gypsy_CL055 (20) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTTGGGAATCG (tRNA-Undet) - not tested Ppersica139_335 REXdb_ID776 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_336_rc REXdb_ID7500 Ty3/gypsy_CL062 (17) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGACTT (tRNA-Arg) - not tested Ppersica139_340_rc REXdb_ID777 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ppersica139_341_rc REXdb_ID778 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_342_rc REXdb_ID7508 Ty3/gypsy_CL062 (17) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGACTT (tRNA-Arg) - not tested Ppersica139_346 REXdb_ID6667 Ty3/gypsy_CL136 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 - - not tested Ppersica139_347_rc REXdb_ID779 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGT (tRNA-Met) - not tested Ppersica139_349 REXdb_ID3475 Ty1/copia_CL039 (23) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_350_rc REXdb_ID3476 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ppersica139_352 REXdb_ID7594 Ty3/gypsy_CL238 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAT (tRNA-Arg) - not tested Ppersica139_353_rc REXdb_ID4780 Ty1/copia_CL385 (3) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 4 - - not tested Ppersica139_355_rc REXdb_ID6747 Ty3/gypsy_CL332 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Ppersica139_357_rc REXdb_ID9526 Ty3/gypsy_CL055 (20) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Ppersica139_361_rc REXdb_ID7573 Ty3/gypsy_CL116 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Ppersica139_364_rc REXdb_ID9498 Ty3/gypsy_CL047 (24) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + not tested not tested 5 TGGTGCTTTCATTGAGAGT (tRNA-Thr) - not tested Ppersica139_366 REXdb_ID7503 Ty3/gypsy_CL062 (17) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACACCCAGTGGGACT (tRNA-Arg) - not tested Ppersica139_372_rc REXdb_ID9488 Ty3/gypsy_CL047 (24) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTGCTTTCATTGAGAGT (tRNA-Thr) - not tested Ppersica139_374 REXdb_ID6748 Ty3/gypsy_CL332 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAATGAA (tRNA-Asp) - not tested Ppersica139_376_rc REXdb_ID9489 Ty3/gypsy_CL047 (24) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTGCTTTCATTGAGAGT (tRNA-Thr) - not tested Ppersica139_377_rc REXdb_ID3477 Ty1/copia_CL409 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ppersica139_378_rc REXdb_ID9493 Ty3/gypsy_CL047 (24) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGTGCTTTCATTGAGAGC (tRNA-Thr) - not tested Ppersica139_38 REXdb_ID780 Ty1/copia_CL581 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Ppersica139_380_rc REXdb_ID13064 Ty3/gypsy_CL239 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ppersica139_381_rc REXdb_ID13065 Ty3/gypsy_CL239 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ppersica139_384 REXdb_ID2570 Ty1/copia_CL046 (21) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAA (tRNA-Ile) Ppersica139_387 REXdb_ID7576 Ty3/gypsy_CL116 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Ppersica139_389_rc REXdb_ID2571 Ty1/copia_CL046 (21) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Ppersica139_39_rc REXdb_ID2572 Ty1/copia_CL046 (21) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATAAGCACGATA (tRNA-Ile) Ppersica139_392 REXdb_ID6736 Ty3/gypsy_CL240 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGCTATAGTT (tRNA-Thr) - not tested Ppersica139_395_rc REXdb_ID9478 Ty3/gypsy_CL047 (24) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGTGCTTTCATTGAGAGC (tRNA-Thr) - not tested Ppersica139_396_rc REXdb_ID3478 Ty1/copia_CL101 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTT (tRNA-Met) - not tested Ppersica139_398_rc REXdb_ID11813 Ty3/gypsy_CL087 (11) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGACGGGTTTC (tRNA-Leu) - not tested Ppersica139_4 REXdb_ID3479 Ty1/copia_CL101 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGGTG (tRNA-?) - not tested Ppersica139_400 REXdb_ID781 Ty1/copia_CL098 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Ppersica139_401 REXdb_ID3480 Ty1/copia_CL039 (23) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_402_rc REXdb_ID782 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_404_rc REXdb_ID783 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_406_rc REXdb_ID784 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Ppersica139_407 REXdb_ID3481 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAAGG (tRNA-Met) - not tested Ppersica139_409 REXdb_ID11814 Ty3/gypsy_CL087 (11) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_410_rc REXdb_ID9529 Ty3/gypsy_CL055 (20) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGAAATC (tRNA-Lys) - not tested Ppersica139_411_rc REXdb_ID785 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_418 REXdb_ID12312 Ty3/gypsy_CL331 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCAA (tRNA-Met) - not tested Ppersica139_422_rc REXdb_ID3482 Ty1/copia_CL034 (25) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_423_rc REXdb_ID3483 Ty1/copia_CL039 (23) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_424_rc REXdb_ID3484 Ty1/copia_CL288 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_428 REXdb_ID786 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAAAGCG (tRNA-Met) - not tested Ppersica139_43 REXdb_ID3485 Ty1/copia_CL039 (23) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_430 REXdb_ID11979 Ty3/gypsy_CL631 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ppersica139_432 REXdb_ID9482 Ty3/gypsy_CL047 (24) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTGCTTTCGTTGAGAGTG (tRNA-Thr) - not tested Ppersica139_433 REXdb_ID3486 Ty1/copia_CL101 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGGTG (tRNA-?) - not tested Ppersica139_436_rc REXdb_ID3487 Ty1/copia_CL101 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTT (tRNA-Met) - not tested Ppersica139_438_rc REXdb_ID9533 Ty3/gypsy_CL055 (20) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGAATT (tRNA-Lys) - not tested Ppersica139_441_rc REXdb_ID9650 Ty3/gypsy_CL091 (11) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGAAATCGA (tRNA-Lys) - not tested Ppersica139_449_rc REXdb_ID9532 Ty3/gypsy_CL055 (20) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Ppersica139_451 REXdb_ID13066 Ty3/gypsy_CL239 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ppersica139_454_rc REXdb_ID2889 Ty1/copia_CL216 (5) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ppersica139_455 REXdb_ID2573 Ty1/copia_CL046 (21) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Ppersica139_456_rc REXdb_ID2574 Ty1/copia_CL046 (21) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Ppersica139_463 REXdb_ID9653 Ty3/gypsy_CL091 (11) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAATT (tRNA-Lys) - not tested Ppersica139_466 REXdb_ID9477 Ty3/gypsy_CL047 (24) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - + not tested not tested 5 TGGTGCTTTCATTGAGAGC (tRNA-Thr) - not tested Ppersica139_469 REXdb_ID787 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_47 REXdb_ID9657 Ty3/gypsy_CL091 (11) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGAATT (tRNA-Lys) - not tested Ppersica139_470_rc REXdb_ID7507 Ty3/gypsy_CL062 (17) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 - - not tested Ppersica139_471_rc REXdb_ID9481 Ty3/gypsy_CL047 (24) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 - - not tested Ppersica139_473_rc REXdb_ID5267 Ty1/copia_CL063 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ppersica139_474_rc REXdb_ID788 Ty1/copia_CL215 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ppersica139_477 REXdb_ID789 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_479_rc REXdb_ID790 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_482_rc REXdb_ID6665 Ty3/gypsy_CL136 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTGCCGGGGA (tRNA-Asp) - not tested Ppersica139_485 REXdb_ID791 Ty1/copia_CL579 (2) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Ppersica139_488_rc REXdb_ID792 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAGGAT (tRNA-Met) - not tested Ppersica139_491_rc REXdb_ID2575 Ty1/copia_CL046 (21) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Ppersica139_493 REXdb_ID793 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_496 REXdb_ID3488 Ty1/copia_CL039 (23) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTTAGAGC (tRNA-?) - not tested Ppersica139_5_rc REXdb_ID804 Ty1/copia_CL215 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ppersica139_500_rc REXdb_ID2576 Ty1/copia_CL046 (21) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAA (tRNA-Ile) Ppersica139_508_rc REXdb_ID3489 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ppersica139_509 REXdb_ID794 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCTAGTT (tRNA-Met) - not tested Ppersica139_51 REXdb_ID2577 Ty1/copia_CL046 (21) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Ppersica139_510_rc REXdb_ID3490 Ty1/copia_CL039 (23) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 4 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_511_rc REXdb_ID795 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCTAGTT (tRNA-Met) - not tested Ppersica139_512 REXdb_ID3491 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ppersica139_515_rc REXdb_ID3492 Ty1/copia_CL039 (23) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_516 REXdb_ID796 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_518_rc REXdb_ID797 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_519 REXdb_ID13718 Ty3/gypsy_CL632 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCTAGAG (tRNA-?) - not tested Ppersica139_524_rc REXdb_ID4781 Ty1/copia_CL171 (6) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAGACGAATTA not tested Ppersica139_530 REXdb_ID3493 Ty1/copia_CL047 (21) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_531 REXdb_ID9539 Ty3/gypsy_CL055 (20) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGTCGTCTGTGGGAATC (tRNA-Lys) - not tested Ppersica139_532_rc REXdb_ID3494 Ty1/copia_CL039 (23) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_535 REXdb_ID7593 Ty3/gypsy_CL238 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGATT (tRNA-Arg) - not tested Ppersica139_538 REXdb_ID798 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_540_rc REXdb_ID799 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_544 REXdb_ID800 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_547_rc REXdb_ID3495 Ty1/copia_CL039 (23) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_550 REXdb_ID9656 Ty3/gypsy_CL091 (11) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTTGGGAATC (tRNA-Undet) - not tested Ppersica139_551 REXdb_ID4782 Ty1/copia_CL171 (6) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAGACGAATTA not tested Ppersica139_552_rc REXdb_ID3496 Ty1/copia_CL047 (21) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_553_rc REXdb_ID3497 Ty1/copia_CL034 (25) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_554_rc REXdb_ID3498 Ty1/copia_CL034 (25) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_56 REXdb_ID9659 Ty3/gypsy_CL091 (11) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Ppersica139_561 REXdb_ID7506 Ty3/gypsy_CL062 (17) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGACTT (tRNA-Arg) - not tested Ppersica139_565_rc REXdb_ID7574 Ty3/gypsy_CL116 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Ppersica139_569_rc REXdb_ID9527 Ty3/gypsy_CL055 (20) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGAAATCGAA (tRNA-Lys) - not tested Ppersica139_572 REXdb_ID2578 Ty1/copia_CL046 (21) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCATGA (tRNA-Ile) Ppersica139_576_rc REXdb_ID9491 Ty3/gypsy_CL047 (24) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTGCTTTCATTGAGAGC (tRNA-Thr) - not tested Ppersica139_577 REXdb_ID9486 Ty3/gypsy_CL047 (24) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTGCTTTCATTGAGAGT (tRNA-Thr) - not tested Ppersica139_579 REXdb_ID6697 Ty3/gypsy_CL172 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Ppersica139_58 REXdb_ID2890 Ty1/copia_CL216 (5) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ppersica139_580_rc REXdb_ID9537 Ty3/gypsy_CL055 (20) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTTGGGAATC (tRNA-Undet) - not tested Ppersica139_586_rc REXdb_ID9525 Ty3/gypsy_CL055 (20) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Ppersica139_587 REXdb_ID801 Ty1/copia_CL582 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ppersica139_588_rc REXdb_ID3499 Ty1/copia_CL101 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTT (tRNA-Met) - not tested Ppersica139_590 REXdb_ID802 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ppersica139_595_rc REXdb_ID803 Ty1/copia_CL098 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGGCAATTCTC (tRNA-?) - not tested Ppersica139_598_rc REXdb_ID3500 Ty1/copia_CL034 (25) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTT (tRNA-Met) - not tested Ppersica139_60_rc REXdb_ID9487 Ty3/gypsy_CL047 (24) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTGCTTTCATTAAGAG (tRNA-Thr) - not tested Ppersica139_600_rc REXdb_ID6738 Ty3/gypsy_CL240 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGCTATAGTT (tRNA-Thr) - not tested Ppersica139_602 REXdb_ID3501 Ty1/copia_CL288 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTT (tRNA-Met) - not tested Ppersica139_604 REXdb_ID2579 Ty1/copia_CL046 (21) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Ppersica139_608_rc REXdb_ID3502 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ppersica139_610 REXdb_ID805 Ty1/copia_CL697 (1) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCCAGAG (tRNA-?) - not tested Ppersica139_612_rc REXdb_ID3503 Ty1/copia_CL580 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Ppersica139_618 REXdb_ID2891 Ty1/copia_CL408 (3) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ppersica139_62_rc REXdb_ID2580 Ty1/copia_CL046 (21) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Ppersica139_623 REXdb_ID3504 Ty1/copia_CL047 (21) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_628_rc REXdb_ID2892 Ty1/copia_CL408 (3) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_629 REXdb_ID3505 Ty1/copia_CL047 (21) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCACTGA (tRNA-?) - not tested Ppersica139_630 REXdb_ID806 Ty1/copia_CL582 (2) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ppersica139_633_rc REXdb_ID807 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_637 REXdb_ID13045 Ty3/gypsy_CL178 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ppersica139_638_rc REXdb_ID3506 Ty1/copia_CL047 (21) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_639_rc REXdb_ID808 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_64 REXdb_ID809 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ppersica139_643_rc REXdb_ID4783 Ty1/copia_CL171 (6) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAGACGAATTA not tested Ppersica139_644 REXdb_ID13545 Ty3/gypsy_CL330 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGGCATGGAGG (tRNA-His) - not tested Ppersica139_645_rc REXdb_ID11810 Ty3/gypsy_CL087 (11) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_646_rc REXdb_ID3507 Ty1/copia_CL583 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ppersica139_65 REXdb_ID810 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_650_rc REXdb_ID811 Ty1/copia_CL215 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ppersica139_655_rc REXdb_ID3508 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Ppersica139_656 REXdb_ID7575 Ty3/gypsy_CL116 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCGGTGGGAT (tRNA-Arg) - not tested Ppersica139_66_rc REXdb_ID4784 Ty1/copia_CL171 (6) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAGACGAATTA not tested Ppersica139_660 REXdb_ID812 Ty1/copia_CL091 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Ppersica139_662 REXdb_ID3509 Ty1/copia_CL039 (23) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_68_rc REXdb_ID3510 Ty1/copia_CL034 (25) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTTTCAGAGC (tRNA-Met) - not tested Ppersica139_73 REXdb_ID9490 Ty3/gypsy_CL047 (24) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTGCTTTCATTGAGAGT (tRNA-Thr) - not tested Ppersica139_74_rc REXdb_ID813 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_75 REXdb_ID814 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_77 REXdb_ID5268 Ty1/copia_CL360 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ppersica139_86 REXdb_ID13719 Ty3/gypsy_CL633 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCTAGAG (tRNA-?) - not tested Ppersica139_88_rc REXdb_ID5269 Ty1/copia_CL063 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ppersica139_9 REXdb_ID3511 Ty1/copia_CL288 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica139_90 REXdb_ID3512 Ty1/copia_CL101 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGGTG (tRNA-?) - not tested Ppersica139_92 REXdb_ID7496 Ty3/gypsy_CL062 (17) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Ppersica139_95_rc REXdb_ID7497 Ty3/gypsy_CL062 (17) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + + - - 5 TGGCACGCCCGGTGGGACT (tRNA-Arg) - not tested Ppersica139_97 REXdb_ID815 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica139_98_rc REXdb_ID3513 Ty1/copia_CL583 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ppersica298_117 REXdb_ID7494 Ty3/gypsy_CL062 (17) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + + - - 5 TGGCACGCCCAGTGGGACTT (tRNA-Arg) - not tested Ppersica298_120 REXdb_ID816 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica298_121 REXdb_ID9495 Ty3/gypsy_CL047 (24) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTGCTTTCATTGAGAGC (tRNA-Thr) - not tested Ppersica298_122_rc REXdb_ID817 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica298_124 REXdb_ID6699 Ty3/gypsy_CL172 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Ppersica298_208_rc REXdb_ID3514 Ty1/copia_CL039 (23) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica298_410_rc REXdb_ID9494 Ty3/gypsy_CL047 (24) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGTGCTTTCATTGAGAGC (tRNA-Thr) - not tested Ppersica298_427_rc REXdb_ID9479 Ty3/gypsy_CL047 (24) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTGCTTTCATTGAGAGC (tRNA-Thr) - not tested Ppersica298_430_rc REXdb_ID2893 Ty1/copia_CL216 (5) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ppersica298_432 REXdb_ID9652 Ty3/gypsy_CL091 (11) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAATCGA (tRNA-Lys) - not tested Ppersica298_433_rc REXdb_ID4785 Ty1/copia_CL385 (3) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 6 - - not tested Ppersica298_438_rc REXdb_ID818 Ty1/copia_CL581 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACGAG (tRNA-?) - not tested Ppersica298_439_rc REXdb_ID3515 Ty1/copia_CL034 (25) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica298_442 REXdb_ID3516 Ty1/copia_CL034 (25) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica298_444_rc REXdb_ID9654 Ty3/gypsy_CL091 (11) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAATCGA (tRNA-Lys) - not tested Ppersica298_446 REXdb_ID9535 Ty3/gypsy_CL055 (20) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTTGGGAATC (tRNA-Undet) - not tested Ppersica298_448 REXdb_ID819 Ty1/copia_CL215 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ppersica298_449_rc REXdb_ID820 Ty1/copia_CL584 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCATCGC (tRNA-?) - not tested Ppersica298_451_rc REXdb_ID13047 Ty3/gypsy_CL178 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ppersica298_452_rc REXdb_ID7495 Ty3/gypsy_CL062 (17) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + + - - 5 TGGCACGCCCAGTGGGACTT (tRNA-Arg) - not tested Ppersica298_454_rc REXdb_ID2581 Ty1/copia_CL046 (21) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Ppersica298_456_rc REXdb_ID2582 Ty1/copia_CL046 (21) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Ppersica298_48 REXdb_ID3517 Ty1/copia_CL039 (23) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica298_498_rc REXdb_ID2894 Ty1/copia_CL216 (5) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ppersica298_503_rc REXdb_ID5270 Ty1/copia_CL063 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ppersica298_506_rc REXdb_ID9485 Ty3/gypsy_CL047 (24) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTGCTTTCATTGAGAGT (tRNA-Thr) - not tested Ppersica298_507_rc REXdb_ID3518 Ty1/copia_CL101 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGCAG (tRNA-?) - not tested Ppersica298_508_rc REXdb_ID3519 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ppersica298_509_rc REXdb_ID821 Ty1/copia_CL578 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ppersica298_516 REXdb_ID9655 Ty3/gypsy_CL091 (11) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAATT (tRNA-Lys) - not tested Ppersica298_52 REXdb_ID9658 Ty3/gypsy_CL091 (11) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGAATT (tRNA-Lys) - not tested Ppersica298_561_rc REXdb_ID3520 Ty1/copia_CL047 (21) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCACTGA (tRNA-?) - not tested Ppersica298_564 REXdb_ID7571 Ty3/gypsy_CL116 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Ppersica298_567_rc REXdb_ID9499 Ty3/gypsy_CL047 (24) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTGCTTTCATTGAGAGC (tRNA-Thr) - not tested Ppersica298_644_rc REXdb_ID13372 Ty3/gypsy_CL179 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAACCA (tRNA-Met) - not tested Ppersica298_646 REXdb_ID822 Ty1/copia_CL091 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Ppersica298_648 REXdb_ID2583 Ty1/copia_CL046 (21) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATA (tRNA-Ile) Ppersica298_652 REXdb_ID9660 Ty3/gypsy_CL091 (11) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Ppersica298_655 REXdb_ID6737 Ty3/gypsy_CL240 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGCTATAGTT (tRNA-Thr) - not tested Ppersica298_656_rc REXdb_ID9540 Ty3/gypsy_CL055 (20) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Ppersica298_659 REXdb_ID7498 Ty3/gypsy_CL062 (17) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACT (tRNA-Arg) - not tested Ppersica298_661_rc REXdb_ID3521 Ty1/copia_CL039 (23) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica298_662 REXdb_ID9651 Ty3/gypsy_CL091 (11) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Ppersica298_663 REXdb_ID7504 Ty3/gypsy_CL062 (17) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGACTT (tRNA-Arg) - not tested Ppersica298_666 REXdb_ID7502 Ty3/gypsy_CL062 (17) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGACTT (tRNA-Arg) - not tested Ppersica298_668 REXdb_ID3522 Ty1/copia_CL047 (21) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ppersica298_669_rc REXdb_ID9492 Ty3/gypsy_CL047 (24) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGTGCTTTCATTGAGAGC (tRNA-Thr) - not tested Ppersica298_670_rc REXdb_ID2895 Ty1/copia_CL216 (5) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ppersica298_671 REXdb_ID823 Ty1/copia_CL275 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ppersica298_672_rc REXdb_ID7577 Ty3/gypsy_CL116 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCGGTGGGAT (tRNA-Arg) - not tested Ppersica298_674 REXdb_ID9530 Ty3/gypsy_CL055 (20) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAATT (tRNA-Lys) - not tested Ppersica298_677 REXdb_ID824 Ty1/copia_CL015 (49) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ppersica298_680_rc REXdb_ID9534 Ty3/gypsy_CL055 (20) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Ppersica298_732 REXdb_ID13046 Ty3/gypsy_CL178 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ppersica298_733_rc REXdb_ID3523 Ty1/copia_CL047 (21) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAGC (tRNA-?) - not tested Ptaeda_1014 REXdb_ID6704 Ty3/gypsy_CL180 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 - - not tested Ptaeda_1020 REXdb_ID5271 Ty1/copia_CL136 (7) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAAGTG (tRNA-Met) - not tested Ptaeda_1029_rc REXdb_ID12320 Ty3/gypsy_CL634 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel - + + + + - + - - - not tested not tested 4 - - not tested Ptaeda_1047_rc REXdb_ID6811 Ty3/gypsy_CL635 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII + + + + + + - - + - - - 5 TGGCGACTCCACTGGGGAAC (tRNA-Arg) - not tested Ptaeda_1099_rc REXdb_ID2642 Ty1/copia_CL139 (7) Class_I::LTR::Ty1/copia::Gymco-I + + + + + - - - - - - - 5 TGGTATCAGAGCCAGC (tRNA-Met) - not tested Ptaeda_1117 REXdb_ID11774 Ty3/gypsy_CL059 (19) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Ptaeda_1137 REXdb_ID11784 Ty3/gypsy_CL059 (19) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAAAGT (tRNA-Met) - not tested Ptaeda_1145_rc REXdb_ID12971 Ty3/gypsy_CL105 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 - - not tested Ptaeda_1147 REXdb_ID6705 Ty3/gypsy_CL180 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCACCGTTTCC (tRNA-Asp) - not tested Ptaeda_1160_rc REXdb_ID6701 Ty3/gypsy_CL177 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCTGTTGTCGGGGAA (tRNA-Asp) - not tested Ptaeda_1172_rc REXdb_ID2643 Ty1/copia_CL139 (7) Class_I::LTR::Ty1/copia::Gymco-I + + + + + - - - - - - - 5 TGGTATCAAAGCA (tRNA-Ile) - not tested Ptaeda_1181_rc REXdb_ID11785 Ty3/gypsy_CL059 (19) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Ptaeda_1201 REXdb_ID825 Ty1/copia_CL217 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Ptaeda_1222 REXdb_ID13097 Ty3/gypsy_CL636 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 - - not tested Ptaeda_1312_rc REXdb_ID6702 Ty3/gypsy_CL177 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCATTGCCGGGGAA (tRNA-Tyr) - not tested Ptaeda_1321 REXdb_ID12973 Ty3/gypsy_CL105 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 - - not tested Ptaeda_1358_rc REXdb_ID12975 Ty3/gypsy_CL105 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCAAGTT (tRNA-Met) - not tested Ptaeda_1368_rc REXdb_ID6706 Ty3/gypsy_CL180 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCTGTTGCCGGGGAA (tRNA-Asp) - not tested Ptaeda_1404 REXdb_ID11783 Ty3/gypsy_CL059 (19) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 - - not tested Ptaeda_1435 REXdb_ID12976 Ty3/gypsy_CL105 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAACC (tRNA-Met) - not tested Ptaeda_1438 REXdb_ID11789 Ty3/gypsy_CL059 (19) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptaeda_1448 REXdb_ID13320 Ty3/gypsy_CL145 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATTAGAGCG (tRNA-Met) - not tested Ptaeda_1460 REXdb_ID11782 Ty3/gypsy_CL059 (19) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Ptaeda_1523 REXdb_ID6749 Ty3/gypsy_CL333 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAAGG (tRNA-Asn) - not tested Ptaeda_1531 REXdb_ID11780 Ty3/gypsy_CL059 (19) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptaeda_1534 REXdb_ID11777 Ty3/gypsy_CL059 (19) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 - - not tested Ptaeda_1568 REXdb_ID11787 Ty3/gypsy_CL059 (19) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGTA (tRNA-Met) - not tested Ptaeda_1572_rc REXdb_ID5272 Ty1/copia_CL136 (7) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptaeda_1573_rc REXdb_ID2644 Ty1/copia_CL139 (7) Class_I::LTR::Ty1/copia::Gymco-I + + + + + - - - - - - - 5 TGGTATCAAAGCCAG (tRNA-Met) - not tested Ptaeda_1590_rc REXdb_ID13720 Ty3/gypsy_CL291 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Ptaeda_1612 REXdb_ID13325 Ty3/gypsy_CL145 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptaeda_1673_rc REXdb_ID11775 Ty3/gypsy_CL059 (19) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCGAG (tRNA-Met) - not tested Ptaeda_1679 REXdb_ID6750 Ty3/gypsy_CL333 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 - - not tested Ptaeda_1714_rc REXdb_ID6851 Ty3/gypsy_CL637 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatIII + + + + + + - - - - + - 5 TGGTGACACCACTGGGGA (tRNA-Cys) - not tested Ptaeda_1784_rc REXdb_ID11907 Ty3/gypsy_CL181 (4) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATGAGAGC (tRNA-?) - not tested Ptaeda_1840_rc REXdb_ID11776 Ty3/gypsy_CL059 (19) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 - - not tested Ptaeda_1869 REXdb_ID13098 Ty3/gypsy_CL638 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - - - - - - - 4 TGGGGAGTAATG (tRNA-?) - not tested Ptaeda_1901_rc REXdb_ID2645 Ty1/copia_CL139 (7) Class_I::LTR::Ty1/copia::Gymco-I + + + + + - - - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Ptaeda_1913 REXdb_ID12974 Ty3/gypsy_CL105 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - - - - - - - 4 - - not tested Ptaeda_1914 REXdb_ID12977 Ty3/gypsy_CL105 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 - - not tested Ptaeda_1988 REXdb_ID11908 Ty3/gypsy_CL181 (4) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 - - not tested Ptaeda_2014_rc REXdb_ID6767 Ty3/gypsy_CL639 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGTCGGGGA (tRNA-Asp) - not tested Ptaeda_2028 REXdb_ID2646 Ty1/copia_CL139 (7) Class_I::LTR::Ty1/copia::Gymco-I + + + + + - - - - - - - 5 TGGTATCAGAGCCAGCT (tRNA-Met) - not tested Ptaeda_2053 REXdb_ID13321 Ty3/gypsy_CL145 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptaeda_2105 REXdb_ID12978 Ty3/gypsy_CL105 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Ptaeda_2265_rc REXdb_ID2647 Ty1/copia_CL139 (7) Class_I::LTR::Ty1/copia::Gymco-I + + + + + - - - - - - - 5 TGGTATCAGAGCCAGCT (tRNA-Met) - not tested Ptaeda_2322_rc REXdb_ID13323 Ty3/gypsy_CL145 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptaeda_2378 REXdb_ID6707 Ty3/gypsy_CL180 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 4 - - not tested Ptaeda_436 REXdb_ID5273 Ty1/copia_CL585 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - not tested not tested 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Ptaeda_456 REXdb_ID11910 Ty3/gypsy_CL181 (4) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 4 TGGTATCAGAGCCAG (tRNA-Met) - not tested Ptaeda_519 REXdb_ID11980 Ty3/gypsy_CL640 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ptaeda_548_rc REXdb_ID2648 Ty1/copia_CL403 (3) Class_I::LTR::Ty1/copia::Gymco-III + + + + + - - - - - - - 5 TGGTTCTTTGAA (tRNA-Leu) - not tested Ptaeda_549 REXdb_ID12979 Ty3/gypsy_CL105 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 - - not tested Ptaeda_585 REXdb_ID11779 Ty3/gypsy_CL059 (19) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptaeda_616_rc REXdb_ID12972 Ty3/gypsy_CL105 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 TGGTATCAGAGCC (tRNA-Met) - not tested Ptaeda_651 REXdb_ID11781 Ty3/gypsy_CL059 (19) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGTA (tRNA-Met) - not tested Ptaeda_667 REXdb_ID5274 Ty1/copia_CL585 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Ptaeda_702_rc REXdb_ID5275 Ty1/copia_CL136 (7) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - not tested not tested 5 TGGTATCAGACC (tRNA-Met) - not tested Ptaeda_734_rc REXdb_ID11909 Ty3/gypsy_CL181 (4) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Ptaeda_783 REXdb_ID11778 Ty3/gypsy_CL059 (19) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptaeda_794 REXdb_ID13322 Ty3/gypsy_CL145 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGGGATCTC (tRNA-Asn) - not tested Ptaeda_812 REXdb_ID5276 Ty1/copia_CL136 (7) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTGCTGTTGA (tRNA-Val) - not tested Ptaeda_857 REXdb_ID13324 Ty3/gypsy_CL145 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Ptaeda_864 REXdb_ID2649 Ty1/copia_CL403 (3) Class_I::LTR::Ty1/copia::Gymco-III + + + + + - - - - - - - 5 TGGTTCTTTGAA (tRNA-Leu) - not tested Ptaeda_898 REXdb_ID11786 Ty3/gypsy_CL059 (19) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptaeda_920_rc REXdb_ID6812 Ty3/gypsy_CL641 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatII + + + + + + - - - - - - 4 - - not tested Ptaeda_938 REXdb_ID2650 Ty1/copia_CL139 (7) Class_I::LTR::Ty1/copia::Gymco-I + + + + + - - - - - - - 5 TGGTATCAGAGCCAGCT (tRNA-Met) - not tested Ptaeda_966_rc REXdb_ID6768 Ty3/gypsy_CL642 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCGTTGCCGAGGA (tRNA-Asp) - not tested Ptaeda_982 REXdb_ID11788 Ty3/gypsy_CL059 (19) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptaeda_998 REXdb_ID6703 Ty3/gypsy_CL177 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 - - not tested Ptricho_347_rc REXdb_ID3524 Ty1/copia_CL586 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptricho_352 REXdb_ID13006 Ty3/gypsy_CL128 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptricho_354_rc REXdb_ID826 Ty1/copia_CL036 (24) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptricho_358_rc REXdb_ID13008 Ty3/gypsy_CL128 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptricho_359_rc REXdb_ID11894 Ty3/gypsy_CL143 (6) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptricho_360 REXdb_ID6629 Ty3/gypsy_CL096 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Ptricho_361 REXdb_ID7551 Ty3/gypsy_CL078 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Ptricho_366 REXdb_ID827 Ty1/copia_CL698 (1) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 - - not tested Ptricho_368 REXdb_ID6630 Ty3/gypsy_CL096 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGAA (tRNA-Asp) - not tested Ptricho_369 REXdb_ID11945 Ty3/gypsy_CL236 (3) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptricho_370_rc REXdb_ID13232 Ty3/gypsy_CL097 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptricho_371 REXdb_ID13233 Ty3/gypsy_CL097 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptricho_372 REXdb_ID828 Ty1/copia_CL051 (18) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTGGTTTTA (tRNA-Met) - not tested Ptricho_394 REXdb_ID11878 Ty3/gypsy_CL127 (7) Class_I::LTR::Ty3/gypsy::chromovirus::CRM - + + + + - - + - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptricho_396 REXdb_ID13079 Ty3/gypsy_CL334 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 - - not tested Ptricho_398_rc REXdb_ID6632 Ty3/gypsy_CL096 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Ptricho_403_rc REXdb_ID829 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Ptricho_405 REXdb_ID13272 Ty3/gypsy_CL101 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCTAGGTTTCAA (tRNA-Met) - not tested Ptricho_406_rc REXdb_ID830 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Ptricho_408_rc REXdb_ID6593 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Ptricho_410 REXdb_ID3525 Ty1/copia_CL122 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptricho_411_rc REXdb_ID13167 Ty3/gypsy_CL067 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Ptricho_414_rc REXdb_ID3526 Ty1/copia_CL052 (18) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Ptricho_416_rc REXdb_ID12313 Ty3/gypsy_CL237 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Ptricho_417_rc REXdb_ID831 Ty1/copia_CL218 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Ptrichocarpa210_100_rc REXdb_ID13009 Ty3/gypsy_CL128 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptrichocarpa210_102_rc REXdb_ID13168 Ty3/gypsy_CL067 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Ptrichocarpa210_103 REXdb_ID3527 Ty1/copia_CL172 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Ptrichocarpa210_104 REXdb_ID832 Ty1/copia_CL051 (18) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTGGTTTTA (tRNA-Met) - not tested Ptrichocarpa210_108_rc REXdb_ID13182 Ty3/gypsy_CL070 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 4 TGGTATCAGAGCCAGGTTAA (tRNA-Met) - not tested Ptrichocarpa210_11_rc REXdb_ID834 Ty1/copia_CL036 (24) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptrichocarpa210_110_rc REXdb_ID5277 Ty1/copia_CL219 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptrichocarpa210_116 REXdb_ID833 Ty1/copia_CL173 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Ptrichocarpa210_117_rc REXdb_ID7556 Ty3/gypsy_CL078 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Ptrichocarpa210_118 REXdb_ID3528 Ty1/copia_CL587 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptrichocarpa210_120_rc REXdb_ID6594 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Ptrichocarpa210_122_rc REXdb_ID13010 Ty3/gypsy_CL128 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptrichocarpa210_124 REXdb_ID7561 Ty3/gypsy_CL078 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Ptrichocarpa210_127 REXdb_ID835 Ty1/copia_CL051 (18) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTGGTTTTA (tRNA-Met) - not tested Ptrichocarpa210_129_rc REXdb_ID5278 Ty1/copia_CL219 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptrichocarpa210_13 REXdb_ID3529 Ty1/copia_CL588 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Ptrichocarpa210_131 REXdb_ID12314 Ty3/gypsy_CL237 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAGAGCAAGGT (tRNA-Met) - not tested Ptrichocarpa210_132_rc REXdb_ID3530 Ty1/copia_CL140 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Ptrichocarpa210_133_rc REXdb_ID3531 Ty1/copia_CL174 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptrichocarpa210_137 REXdb_ID5279 Ty1/copia_CL219 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptrichocarpa210_14 REXdb_ID3532 Ty1/copia_CL587 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptrichocarpa210_140_rc REXdb_ID6589 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGTCGTTGCCGGGGA (tRNA-Asp) - not tested Ptrichocarpa210_141 REXdb_ID3533 Ty1/copia_CL362 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptrichocarpa210_142_rc REXdb_ID836 Ty1/copia_CL051 (18) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptrichocarpa210_143_rc REXdb_ID6587 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCACCGTTGCCGGGGA (tRNA-Asp) - not tested Ptrichocarpa210_148 REXdb_ID6591 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Ptrichocarpa210_15 REXdb_ID11947 Ty3/gypsy_CL335 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGCACCAAAGA (tRNA-Lys) - not tested Ptrichocarpa210_150 REXdb_ID5280 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Ptrichocarpa210_151_rc REXdb_ID11882 Ty3/gypsy_CL127 (7) Class_I::LTR::Ty3/gypsy::chromovirus::CRM - + + + + - - + - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptrichocarpa210_154_rc REXdb_ID6585 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 - - not tested Ptrichocarpa210_155_rc REXdb_ID6600 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila - + + + + - - - - - not tested not tested 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Ptrichocarpa210_156 REXdb_ID6739 Ty3/gypsy_CL241 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Ptrichocarpa210_16_rc REXdb_ID3534 Ty1/copia_CL299 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Ptrichocarpa210_161 REXdb_ID6638 Ty3/gypsy_CL096 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Ptrichocarpa210_164 REXdb_ID837 Ty1/copia_CL699 (1) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Ptrichocarpa210_167_rc REXdb_ID13011 Ty3/gypsy_CL128 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptrichocarpa210_168_rc REXdb_ID1810 Ty1/copia_CL053 (17) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Ptrichocarpa210_170_rc REXdb_ID3535 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptrichocarpa210_171_rc REXdb_ID3536 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptrichocarpa210_178_rc REXdb_ID7552 Ty3/gypsy_CL078 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Ptrichocarpa210_179 REXdb_ID13546 Ty3/gypsy_CL336 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAGGTTAC (tRNA-Met) - not tested Ptrichocarpa210_180_rc REXdb_ID5281 Ty1/copia_CL063 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptrichocarpa210_181 REXdb_ID3537 Ty1/copia_CL338 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 4 TGGTATCAGAGCA (tRNA-Met) - not tested Ptrichocarpa210_182_rc REXdb_ID13548 Ty3/gypsy_CL337 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Ptrichocarpa210_188 REXdb_ID3538 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Ptrichocarpa210_189 REXdb_ID13080 Ty3/gypsy_CL334 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptrichocarpa210_190 REXdb_ID13012 Ty3/gypsy_CL128 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptrichocarpa210_191_rc REXdb_ID6599 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGAGGA (tRNA-Asp) - not tested Ptrichocarpa210_192_rc REXdb_ID6633 Ty3/gypsy_CL096 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCTGGGGA (tRNA-Asp) - not tested Ptrichocarpa210_195 REXdb_ID838 Ty1/copia_CL051 (18) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTGGTTTTA (tRNA-Met) - not tested Ptrichocarpa210_197 REXdb_ID3539 Ty1/copia_CL220 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptrichocarpa210_199_rc REXdb_ID5282 Ty1/copia_CL063 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptrichocarpa210_2 REXdb_ID6596 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCATTGCCGGGGA (tRNA-Asp) - not tested Ptrichocarpa210_201 REXdb_ID3540 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 - - not tested Ptrichocarpa210_203 REXdb_ID839 Ty1/copia_CL051 (18) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTGGTTTTA (tRNA-Met) - not tested Ptrichocarpa210_207 REXdb_ID11949 Ty3/gypsy_CL338 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCCAGGTTTTGAT (tRNA-Met) - not tested Ptrichocarpa210_208 REXdb_ID840 Ty1/copia_CL589 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptrichocarpa210_21_rc REXdb_ID13436 Ty3/gypsy_CL242 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Ptrichocarpa210_210_rc REXdb_ID3541 Ty1/copia_CL590 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Ptrichocarpa210_214 REXdb_ID3542 Ty1/copia_CL362 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptrichocarpa210_216 REXdb_ID841 Ty1/copia_CL591 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Ptrichocarpa210_218_rc REXdb_ID5283 Ty1/copia_CL221 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGGGCA (tRNA-Leu) - not tested Ptrichocarpa210_226_rc REXdb_ID842 Ty1/copia_CL051 (18) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Ptrichocarpa210_231 REXdb_ID3543 Ty1/copia_CL052 (18) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAAGCA (tRNA-Ile) - not tested Ptrichocarpa210_232 REXdb_ID7559 Ty3/gypsy_CL078 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Ptrichocarpa210_234_rc REXdb_ID3544 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptrichocarpa210_237 REXdb_ID13721 Ty3/gypsy_CL643 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAGGTTTT (tRNA-Met) - not tested Ptrichocarpa210_24 REXdb_ID843 Ty1/copia_CL591 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Ptrichocarpa210_241 REXdb_ID13242 Ty3/gypsy_CL098 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCTGAGGGTG (tRNA-Leu) - not tested Ptrichocarpa210_247_rc REXdb_ID11883 Ty3/gypsy_CL127 (7) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptrichocarpa210_25_rc REXdb_ID11895 Ty3/gypsy_CL143 (6) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptrichocarpa210_252 REXdb_ID6590 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 - - not tested Ptrichocarpa210_253_rc REXdb_ID6595 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Ptrichocarpa210_254_rc REXdb_ID13550 Ty3/gypsy_CL339 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCTGGTTTCAA (tRNA-Met) - not tested Ptrichocarpa210_26_rc REXdb_ID11950 Ty3/gypsy_CL338 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCCAGGTTTTGAT (tRNA-Met) - not tested Ptrichocarpa210_262 REXdb_ID6588 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGTCGTTGCCGGGGA (tRNA-Asp) - not tested Ptrichocarpa210_263_rc REXdb_ID13183 Ty3/gypsy_CL070 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptrichocarpa210_265_rc REXdb_ID6635 Ty3/gypsy_CL096 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Ptrichocarpa210_268 REXdb_ID5284 Ty1/copia_CL063 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptrichocarpa210_269 REXdb_ID3545 Ty1/copia_CL588 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Ptrichocarpa210_270 REXdb_ID2896 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Ptrichocarpa210_271 REXdb_ID3546 Ty1/copia_CL105 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Ptrichocarpa210_274_rc REXdb_ID844 Ty1/copia_CL589 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptrichocarpa210_275 REXdb_ID3547 Ty1/copia_CL576 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Ptrichocarpa210_277_rc REXdb_ID13537 Ty3/gypsy_CL326 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptrichocarpa210_278_rc REXdb_ID845 Ty1/copia_CL051 (18) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCCTGGTTTTA (tRNA-Met) - not tested Ptrichocarpa210_280_rc REXdb_ID846 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptrichocarpa210_281 REXdb_ID847 Ty1/copia_CL051 (18) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Ptrichocarpa210_282_rc REXdb_ID6597 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCTGGGGA (tRNA-Asp) - not tested Ptrichocarpa210_287_rc REXdb_ID848 Ty1/copia_CL051 (18) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTGGTTTTA (tRNA-Met) - not tested Ptrichocarpa210_291_rc REXdb_ID13551 Ty3/gypsy_CL339 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCTGGTTTCAA (tRNA-Met) - not tested Ptrichocarpa210_293_rc REXdb_ID7554 Ty3/gypsy_CL078 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + + + 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Ptrichocarpa210_300_rc REXdb_ID5285 Ty1/copia_CL221 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptrichocarpa210_301_rc REXdb_ID849 Ty1/copia_CL051 (18) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCTAG (tRNA-Met) - not tested Ptrichocarpa210_305 REXdb_ID3548 Ty1/copia_CL174 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTAAAAAAAA (tRNA-Phe) - not tested Ptrichocarpa210_306_rc REXdb_ID13271 Ty3/gypsy_CL101 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCTGGTTTCAA (tRNA-Met) - not tested Ptrichocarpa210_31 REXdb_ID6631 Ty3/gypsy_CL096 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Ptrichocarpa210_311_rc REXdb_ID5286 Ty1/copia_CL063 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptrichocarpa210_314 REXdb_ID11879 Ty3/gypsy_CL127 (7) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptrichocarpa210_317 REXdb_ID13549 Ty3/gypsy_CL337 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptrichocarpa210_319_rc REXdb_ID6636 Ty3/gypsy_CL096 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Ptrichocarpa210_321 REXdb_ID11880 Ty3/gypsy_CL127 (7) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptrichocarpa210_326_rc REXdb_ID6740 Ty3/gypsy_CL241 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Ptrichocarpa210_329_rc REXdb_ID11881 Ty3/gypsy_CL127 (7) Class_I::LTR::Ty3/gypsy::chromovirus::CRM - + + + + - - + - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptrichocarpa210_330 REXdb_ID6741 Ty3/gypsy_CL241 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Ptrichocarpa210_333_rc REXdb_ID6602 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCACCGTTGCCGGGGA (tRNA-Asp) - not tested Ptrichocarpa210_335_rc REXdb_ID11896 Ty3/gypsy_CL143 (6) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptrichocarpa210_337 REXdb_ID5287 Ty1/copia_CL063 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptrichocarpa210_37_rc REXdb_ID6634 Ty3/gypsy_CL096 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCTGGGGA (tRNA-Asp) - not tested Ptrichocarpa210_4 REXdb_ID3549 Ty1/copia_CL174 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptrichocarpa210_41 REXdb_ID11948 Ty3/gypsy_CL335 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCCTGGTTA (tRNA-Met) - not tested Ptrichocarpa210_44 REXdb_ID6584 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Ptrichocarpa210_48 REXdb_ID7555 Ty3/gypsy_CL078 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTCCACTGGGGA (tRNA-Arg) - not tested Ptrichocarpa210_50 REXdb_ID6592 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Ptrichocarpa210_53_rc REXdb_ID7557 Ty3/gypsy_CL078 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + - 5 TGGCGACTCCACTGGGGATT (tRNA-His) - not tested Ptrichocarpa210_54_rc REXdb_ID7558 Ty3/gypsy_CL078 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - + + 4 - - not tested Ptrichocarpa210_62_rc REXdb_ID11981 Ty3/gypsy_CL644 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Ptrichocarpa210_63_rc REXdb_ID850 Ty1/copia_CL217 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptrichocarpa210_65 REXdb_ID851 Ty1/copia_CL390 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Ptrichocarpa210_66 REXdb_ID3550 Ty1/copia_CL592 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptrichocarpa210_71_rc REXdb_ID852 Ty1/copia_CL051 (18) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTGGTTTTA (tRNA-Met) - not tested Ptrichocarpa210_74_rc REXdb_ID3551 Ty1/copia_CL577 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTT (tRNA-Met) - not tested Ptrichocarpa210_77 REXdb_ID5288 Ty1/copia_CL219 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptrichocarpa210_78 REXdb_ID13007 Ty3/gypsy_CL128 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Ptrichocarpa210_82 REXdb_ID853 Ty1/copia_CL051 (18) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Ptrichocarpa210_83_rc REXdb_ID5289 Ty1/copia_CL013 (54) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTGTCAGAGCC (tRNA-Met) - not tested Ptrichocarpa210_87 REXdb_ID6601 Ty3/gypsy_CL043 (32) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Ptrichocarpa210_88_rc REXdb_ID7553 Ty3/gypsy_CL078 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - + 5 - - not tested Ptrichocarpa210_89 REXdb_ID6637 Ty3/gypsy_CL096 (10) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Ptrichocarpa210_9 REXdb_ID854 Ty1/copia_CL051 (18) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Ptrichocarpa210_92 REXdb_ID5290 Ty1/copia_CL063 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Ptrichocarpa210_98 REXdb_ID855 Ty1/copia_CL092 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Pvirgatum273_10 REXdb_ID13722 Ty3/gypsy_CL645 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Pvirgatum273_101_rc REXdb_ID13723 Ty3/gypsy_CL646 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Pvirgatum273_104 REXdb_ID13136 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina - + + + + - + - - - not tested not tested 5 TGGTATCACGAT (tRNA-?) - not tested Pvirgatum273_112_rc REXdb_ID13724 Ty3/gypsy_CL647 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATTCA (tRNA-Met) - not tested Pvirgatum273_118 REXdb_ID13725 Ty3/gypsy_CL648 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATTCAGGT (tRNA-Met) - not tested Pvirgatum273_119_rc REXdb_ID13726 Ty3/gypsy_CL649 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGGCA (tRNA-Met) - not tested Pvirgatum273_129 REXdb_ID856 Ty1/copia_CL210 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - + - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Pvirgatum273_153 REXdb_ID4547 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCAAGG (tRNA-Met) - not tested Pvirgatum273_155_rc REXdb_ID13552 Ty3/gypsy_CL340 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - + - 5 TGGTATCAGGGA (tRNA-?) - not tested Pvirgatum273_167 REXdb_ID12388 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 5 TGGTATCAGCGC (tRNA-?) - not tested Pvirgatum273_168_rc REXdb_ID13727 Ty3/gypsy_CL650 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 4 - - not tested Pvirgatum273_171_rc REXdb_ID6751 Ty3/gypsy_CL341 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAACAA (tRNA-Asp) - not tested Pvirgatum273_178_rc REXdb_ID13121 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCATGAT (tRNA-?) - not tested Pvirgatum273_180_rc REXdb_ID6752 Ty3/gypsy_CL341 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAACAA (tRNA-Asp) - not tested Pvirgatum273_184 REXdb_ID8706 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 - - not tested Pvirgatum273_185 REXdb_ID12891 Ty3/gypsy_CL058 (19) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 - - not tested Pvirgatum273_19_rc REXdb_ID9770 Ty3/gypsy_CL651 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGT (tRNA-Arg) - not tested Pvirgatum273_203 REXdb_ID857 Ty1/copia_CL593 (2) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATACAGAG (tRNA-?) - not tested Pvirgatum273_205 REXdb_ID7453 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACACCCGGTGGGAC (tRNA-Arg) - not tested Pvirgatum273_206 REXdb_ID4548 Ty1/copia_CL410 (3) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pvirgatum273_219_rc REXdb_ID13728 Ty3/gypsy_CL652 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGAC (tRNA-Met) - not tested Pvirgatum273_222 REXdb_ID13729 Ty3/gypsy_CL653 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATTCAG (tRNA-Met) - not tested Pvirgatum273_225 REXdb_ID9771 Ty3/gypsy_CL654 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + + - 5 - - not tested Pvirgatum273_228_rc REXdb_ID858 Ty1/copia_CL033 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTCAGAG (tRNA-?) - not tested Pvirgatum273_232 REXdb_ID859 Ty1/copia_CL137 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Pvirgatum273_238 REXdb_ID3552 Ty1/copia_CL411 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCTAGAG (tRNA-?) - not tested Pvirgatum273_240_rc REXdb_ID860 Ty1/copia_CL594 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGAATCAGAGT (tRNA-?) - not tested Pvirgatum273_242_rc REXdb_ID4549 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCAAGG (tRNA-Met) - not tested Pvirgatum273_261_rc REXdb_ID2897 Ty1/copia_CL401 (3) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGCATCAAGAG (tRNA-?) - not tested Pvirgatum273_267 REXdb_ID13730 Ty3/gypsy_CL655 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATTCAG (tRNA-Met) - not tested Pvirgatum273_287_rc REXdb_ID13731 Ty3/gypsy_CL656 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGTCA (tRNA-?) - not tested Pvirgatum273_289_rc REXdb_ID7605 Ty3/gypsy_CL657 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCGTTGGGGA (tRNA-Arg) - not tested Pvirgatum273_292_rc REXdb_ID13732 Ty3/gypsy_CL658 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATTC (tRNA-Met) - not tested Pvirgatum273_293 REXdb_ID11911 Ty3/gypsy_CL182 (4) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTAGGATAGA (tRNA-Ile) - not tested Pvirgatum273_320_rc REXdb_ID7442 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCATGCCTGG (tRNA-?) - not tested Pvirgatum273_324_rc REXdb_ID13554 Ty3/gypsy_CL342 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Pvirgatum273_328_rc REXdb_ID13733 Ty3/gypsy_CL659 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGGGA (tRNA-?) - not tested Pvirgatum273_329 REXdb_ID1918 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGCTAGTAGGA (tRNA-?) - not tested Pvirgatum273_334 REXdb_ID4550 Ty1/copia_CL410 (3) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Pvirgatum273_343_rc REXdb_ID13060 Ty3/gypsy_CL229 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Pvirgatum273_355_rc REXdb_ID861 Ty1/copia_CL595 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACGAG (tRNA-?) - not tested Pvirgatum273_358 REXdb_ID862 Ty1/copia_CL596 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Pvirgatum273_361_rc REXdb_ID13734 Ty3/gypsy_CL660 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - - - - - - - 5 TGGTATCAGATTC (tRNA-Met) - not tested Pvirgatum273_365 REXdb_ID2898 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGTCG (tRNA-?) - not tested Pvirgatum273_377_rc REXdb_ID13735 Ty3/gypsy_CL661 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACCCT (tRNA-?) - not tested Pvirgatum273_38_rc REXdb_ID863 Ty1/copia_CL137 (7) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTACAGAGCA (tRNA-?) - not tested Pvirgatum273_386_rc REXdb_ID3553 Ty1/copia_CL404 (3) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGCATCAGAGCC (tRNA-Met) - not tested Pvirgatum273_392_rc REXdb_ID13556 Ty3/gypsy_CL343 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAGC (tRNA-Met) - not tested Pvirgatum273_396_rc REXdb_ID8705 Ty3/gypsy_CL018 (103) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - - - - 5 TGGCGCGCCAGGTAGGGGAT (tRNA-Arg) - not tested Pvirgatum273_397_rc REXdb_ID12852 Ty3/gypsy_CL052 (21) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + + + 5 TGGTATCATAGCC (tRNA-Met) - not tested Pvirgatum273_398 REXdb_ID12404 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGCATCAGAGC (tRNA-?) - not tested Pvirgatum273_400 REXdb_ID12356 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Pvirgatum273_413_rc REXdb_ID13736 Ty3/gypsy_CL662 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTACCAGAGA (tRNA-?) - not tested Pvirgatum273_418 REXdb_ID3554 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGGGCC (tRNA-Met) - not tested Pvirgatum273_436 REXdb_ID7449 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Pvirgatum273_437 REXdb_ID7446 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Pvirgatum273_438 REXdb_ID7443 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Pvirgatum273_44_rc REXdb_ID864 Ty1/copia_CL141 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATACAGAG (tRNA-?) - not tested Pvirgatum273_445_rc REXdb_ID7430 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 - - not tested Pvirgatum273_447_rc REXdb_ID1811 Ty1/copia_CL252 (4) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Pvirgatum273_449 REXdb_ID13737 Ty3/gypsy_CL663 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGGAA (tRNA-Phe) - not tested Pvirgatum273_452_rc REXdb_ID13738 Ty3/gypsy_CL664 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Pvirgatum273_458_rc REXdb_ID13555 Ty3/gypsy_CL342 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Pvirgatum273_468 REXdb_ID865 Ty1/copia_CL040 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACAGA (tRNA-?) - not tested Pvirgatum273_488_rc REXdb_ID3555 Ty1/copia_CL411 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCTAGAG (tRNA-?) - not tested Pvirgatum273_491 REXdb_ID4786 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - - not tested Pvirgatum273_493_rc REXdb_ID13739 Ty3/gypsy_CL665 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATT (tRNA-Met) - not tested Pvirgatum273_494_rc REXdb_ID866 Ty1/copia_CL412 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Pvirgatum273_498 REXdb_ID13740 Ty3/gypsy_CL666 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGTCT (tRNA-?) - not tested Pvirgatum273_502_rc REXdb_ID13741 Ty3/gypsy_CL667 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATTC (tRNA-Met) - not tested Pvirgatum273_505_rc REXdb_ID13742 Ty3/gypsy_CL668 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCTAGAG (tRNA-?) - not tested Pvirgatum273_507 REXdb_ID867 Ty1/copia_CL137 (7) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGAATCAGAGC (tRNA-Met) - not tested Pvirgatum273_510 REXdb_ID868 Ty1/copia_CL568 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGACG (tRNA-?) - not tested Pvirgatum273_54_rc REXdb_ID869 Ty1/copia_CL593 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTCAGAG (tRNA-?) - not tested Pvirgatum273_55_rc REXdb_ID7432 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Pvirgatum273_59_rc REXdb_ID7435 Ty3/gypsy_CL031 (53) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGG (tRNA-Arg) - not tested Pvirgatum273_6 REXdb_ID13743 Ty3/gypsy_CL669 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGGTT (tRNA-?) - not tested Pvirgatum273_64_rc REXdb_ID870 Ty1/copia_CL137 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGAATCAGAGC (tRNA-Met) - not tested Pvirgatum273_67 REXdb_ID2899 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGTCG (tRNA-?) - not tested Pvirgatum273_72 REXdb_ID4551 Ty1/copia_CL410 (3) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pvirgatum273_74 REXdb_ID871 Ty1/copia_CL597 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Pvirgatum273_75 REXdb_ID13744 Ty3/gypsy_CL670 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina - + + + + - + - - - not tested not tested 5 TGGTAATTAGAG (tRNA-?) - not tested Pvirgatum273_87 REXdb_ID872 Ty1/copia_CL120 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - + - 5 TGGTATCACGAG (tRNA-?) - not tested Pvirgatum273_95_rc REXdb_ID13745 Ty3/gypsy_CL671 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGTCT (tRNA-?) - not tested Pvirgatum273_97 REXdb_ID873 Ty1/copia_CL080 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Pvulgaris218_101 REXdb_ID9403 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCCCG (tRNA-Lys) - not tested Pvulgaris218_124_rc REXdb_ID9418 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACAGTGGGGC (tRNA-Lys) - not tested Pvulgaris218_129_rc REXdb_ID11843 Ty3/gypsy_CL106 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCATGAG (tRNA-?) - not tested Pvulgaris218_131_rc REXdb_ID9772 Ty3/gypsy_CL672 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 - - not tested Pvulgaris218_140_rc REXdb_ID3556 Ty1/copia_CL409 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Pvulgaris218_161 REXdb_ID13746 Ty3/gypsy_CL673 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Pvulgaris218_178 REXdb_ID4552 Ty1/copia_CL222 (5) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGCATCAAGAG (tRNA-?) - not tested Pvulgaris218_179_rc REXdb_ID4787 Ty1/copia_CL598 (2) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CGTAAGGACTTAT not tested Pvulgaris218_20_rc REXdb_ID9408 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACTC (tRNA-?) - not tested Pvulgaris218_217 REXdb_ID11845 Ty3/gypsy_CL106 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCTAGAG (tRNA-?) - not tested Pvulgaris218_226_rc REXdb_ID9423 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Pvulgaris218_247 REXdb_ID9689 Ty3/gypsy_CL117 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Pvulgaris218_248 REXdb_ID9692 Ty3/gypsy_CL117 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Pvulgaris218_259 REXdb_ID9749 Ty3/gypsy_CL344 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Pvulgaris218_273 REXdb_ID11847 Ty3/gypsy_CL106 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCTAGAG (tRNA-?) - not tested Pvulgaris218_293 REXdb_ID9421 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 - - not tested Pvulgaris218_305 REXdb_ID9696 Ty3/gypsy_CL117 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGC (tRNA-Lys) - not tested Pvulgaris218_314_rc REXdb_ID9424 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Pvulgaris218_331_rc REXdb_ID9409 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Pvulgaris218_336 REXdb_ID3557 Ty1/copia_CL133 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Pvulgaris218_342_rc REXdb_ID9404 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCACCCACCATGGGGC (tRNA-Lys) - not tested Pvulgaris218_343_rc REXdb_ID9407 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Pvulgaris218_345 REXdb_ID9426 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Pvulgaris218_385 REXdb_ID9438 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Pvulgaris218_395_rc REXdb_ID9773 Ty3/gypsy_CL674 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Pvulgaris218_396_rc REXdb_ID4553 Ty1/copia_CL222 (5) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGCATCAAGAG (tRNA-?) - not tested Pvulgaris218_414_rc REXdb_ID9440 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Pvulgaris218_416 REXdb_ID9411 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Pvulgaris218_424 REXdb_ID9410 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Pvulgaris218_443 REXdb_ID9693 Ty3/gypsy_CL117 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Pvulgaris218_456_rc REXdb_ID11844 Ty3/gypsy_CL106 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCATGAG (tRNA-?) - not tested Pvulgaris218_462 REXdb_ID9436 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Pvulgaris218_48 REXdb_ID9435 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Pvulgaris218_491 REXdb_ID11849 Ty3/gypsy_CL106 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCATGAG (tRNA-?) - not tested Pvulgaris218_495 REXdb_ID9414 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - + 5 - - not tested Pvulgaris218_498 REXdb_ID9425 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Pvulgaris218_5 REXdb_ID4788 Ty1/copia_CL598 (2) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - - not tested Pvulgaris218_511 REXdb_ID9412 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Pvulgaris218_523 REXdb_ID9427 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Pvulgaris218_529_rc REXdb_ID2900 Ty1/copia_CL041 (22) Class_I::LTR::Ty1/copia::Ikeros - + + + + - - - - - not tested not tested 5 TGGTATCAGAACCT (tRNA-Met) - not tested Pvulgaris218_532_rc REXdb_ID9406 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Pvulgaris218_534_rc REXdb_ID11915 Ty3/gypsy_CL183 (4) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATTTAGAG (tRNA-?) - not tested Pvulgaris218_551_rc REXdb_ID9442 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Pvulgaris218_578 REXdb_ID13099 Ty3/gypsy_CL675 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Pvulgaris218_596_rc REXdb_ID11850 Ty3/gypsy_CL106 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCTTGAG (tRNA-?) - not tested Pvulgaris218_609_rc REXdb_ID11851 Ty3/gypsy_CL106 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCATGAG (tRNA-?) - not tested Pvulgaris218_61 REXdb_ID13558 Ty3/gypsy_CL345 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTCCGACCCGC (tRNA-His) - not tested Pvulgaris218_622_rc REXdb_ID9405 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCTCG (tRNA-Lys) - not tested Pvulgaris218_624_rc REXdb_ID9430 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Pvulgaris218_633 REXdb_ID9434 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Pvulgaris218_637 REXdb_ID13559 Ty3/gypsy_CL345 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTCCGACCTGCCGGATC (tRNA-Tyr) - not tested Pvulgaris218_639_rc REXdb_ID9694 Ty3/gypsy_CL117 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCATCGTGGGGC (tRNA-Lys) - not tested Pvulgaris218_649 REXdb_ID11846 Ty3/gypsy_CL106 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + not tested not tested - - 5 TGGTATCATGAG (tRNA-?) - not tested Pvulgaris218_66_rc REXdb_ID9413 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Pvulgaris218_660_rc REXdb_ID9416 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Pvulgaris218_673_rc REXdb_ID9419 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Pvulgaris218_69_rc REXdb_ID9750 Ty3/gypsy_CL344 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Pvulgaris218_690 REXdb_ID11918 Ty3/gypsy_CL183 (4) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 6 - - not tested Pvulgaris218_702 REXdb_ID9429 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Pvulgaris218_723_rc REXdb_ID9437 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Pvulgaris218_737 REXdb_ID9432 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Pvulgaris218_739_rc REXdb_ID4554 Ty1/copia_CL599 (2) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Pvulgaris218_746_rc REXdb_ID2901 Ty1/copia_CL041 (22) Class_I::LTR::Ty1/copia::Ikeros - + + + + - - - - - not tested not tested 5 - - not tested Pvulgaris218_747 REXdb_ID2902 Ty1/copia_CL041 (22) Class_I::LTR::Ty1/copia::Ikeros - + + + + - - - - - not tested not tested 5 TGGTATCAAAGCCT (tRNA-Met) - not tested Pvulgaris218_773 REXdb_ID9417 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 - - not tested Pvulgaris218_784_rc REXdb_ID9691 Ty3/gypsy_CL117 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCCGCCGTGGGGC (tRNA-Lys) - not tested Pvulgaris218_797 REXdb_ID3558 Ty1/copia_CL151 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Pvulgaris218_802 REXdb_ID9695 Ty3/gypsy_CL117 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Pvulgaris218_823_rc REXdb_ID4555 Ty1/copia_CL222 (5) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGCATCAAGAG (tRNA-?) - not tested Pvulgaris218_832_rc REXdb_ID9420 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 - - not tested Pvulgaris218_842 REXdb_ID4556 Ty1/copia_CL222 (5) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 TGGCATCAAGAG (tRNA-?) - not tested Pvulgaris218_864 REXdb_ID9441 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 4 - - not tested Pvulgaris218_878 REXdb_ID9415 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 4 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Pvulgaris218_89 REXdb_ID9422 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Pvulgaris218_893_rc REXdb_ID9443 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Pvulgaris218_896_rc REXdb_ID4557 Ty1/copia_CL222 (5) Class_I::LTR::Ty1/copia::SIRE - + + + + - - - - - not tested not tested 5 - - not tested Pvulgaris218_9 REXdb_ID11916 Ty3/gypsy_CL183 (4) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCTAGAG (tRNA-?) - not tested Pvulgaris218_903_rc REXdb_ID9428 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Pvulgaris218_915 REXdb_ID9433 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCCACCGTGGGAC (tRNA-Lys) - not tested Pvulgaris218_940 REXdb_ID9431 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTAGGGC (tRNA-Lys) - not tested Pvulgaris218_942_rc REXdb_ID9439 Ty3/gypsy_CL038 (41) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Pvulgaris218_947 REXdb_ID11917 Ty3/gypsy_CL183 (4) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCATGAG (tRNA-?) - not tested Pvulgaris218_954 REXdb_ID4558 Ty1/copia_CL599 (2) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 - - not tested Pvulgaris218_965 REXdb_ID11848 Ty3/gypsy_CL106 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + not tested not tested - - 5 - - not tested Pvulgaris218_968 REXdb_ID9690 Ty3/gypsy_CL117 (8) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Pvulgaris218_972_rc REXdb_ID5291 Ty1/copia_CL365 (3) Class_I::LTR::Ty1/copia::Tork - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Rcommunis119_37 REXdb_ID13100 Ty3/gypsy_CL676 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGTA (tRNA-Met) - not tested Rcommunis119_41 REXdb_ID11982 Ty3/gypsy_CL677 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Rcommunis119_45_rc REXdb_ID11632 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Reina_ZeaM_ID49 REXdb_ID13823 Ty3/gypsy_CL294 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - not tested not tested not tested not tested Retand REXdb_ID9779 Ty3/gypsy_CL678 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - + not tested not tested not tested not tested not tested not tested Retrosor2_SorB_ID48 REXdb_ID13113 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - not tested not tested not tested not tested Sbicolor255_10 REXdb_ID9052 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_100 REXdb_ID6852 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_102 REXdb_ID4789 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTAATT not tested Sbicolor255_106_rc REXdb_ID9580 Ty3/gypsy_CL060 (18) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCTCC (tRNA-Lys) - not tested Sbicolor255_107_rc REXdb_ID3559 Ty1/copia_CL700 (1) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 4 TGGTATCGGAGCC (tRNA-Met) - not tested Sbicolor255_108_rc REXdb_ID11904 Ty3/gypsy_CL137 (6) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAAAGCCAAGTTTC (tRNA-Met) - not tested Sbicolor255_11_rc REXdb_ID9069 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_112_rc REXdb_ID8975 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_114 REXdb_ID6528 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Sbicolor255_117 REXdb_ID6561 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAACG (tRNA-Asp) - not tested Sbicolor255_122 REXdb_ID6910 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACACCTAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_125 REXdb_ID9585 Ty3/gypsy_CL060 (18) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCCACCGTGGGGCCCGAA (tRNA-Lys) - not tested Sbicolor255_126_rc REXdb_ID9005 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_127_rc REXdb_ID9081 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_128_rc REXdb_ID9079 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - + not tested not tested 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_129_rc REXdb_ID874 Ty1/copia_CL142 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGCCT (tRNA-?) - not tested Sbicolor255_13_rc REXdb_ID6894 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_133 REXdb_ID12892 Ty3/gypsy_CL071 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCAGGTTTCC (tRNA-Met) - not tested Sbicolor255_134_rc REXdb_ID9096 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_136 REXdb_ID9056 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_137_rc REXdb_ID9054 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_139_rc REXdb_ID2903 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATGAGACG (tRNA-?) - not tested Sbicolor255_141_rc REXdb_ID4559 Ty1/copia_CL106 (9) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Sbicolor255_142_rc REXdb_ID9087 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_144_rc REXdb_ID3560 Ty1/copia_CL413 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCACCTCCG (tRNA-Leu) - not tested Sbicolor255_146_rc REXdb_ID9024 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_147 REXdb_ID12980 Ty3/gypsy_CL107 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + - + 5 TGGCATCGGAGC (tRNA-?) - not tested Sbicolor255_148_rc REXdb_ID3561 Ty1/copia_CL123 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sbicolor255_15_rc REXdb_ID6893 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGT (tRNA-Arg) - not tested Sbicolor255_150_rc REXdb_ID13748 Ty3/gypsy_CL679 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGACT (tRNA-?) - not tested Sbicolor255_151 REXdb_ID4560 Ty1/copia_CL106 (9) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sbicolor255_153 REXdb_ID6879 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 4 - - not tested Sbicolor255_157 REXdb_ID3562 Ty1/copia_CL411 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCTAGAG (tRNA-?) - not tested Sbicolor255_16_rc REXdb_ID6876 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 4 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_160_rc REXdb_ID6870 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_161_rc REXdb_ID8891 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Sbicolor255_162 REXdb_ID9043 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_163_rc REXdb_ID12798 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAAAGCAAGG (tRNA-Ile) - not tested Sbicolor255_165 REXdb_ID9092 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_166_rc REXdb_ID4561 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sbicolor255_168 REXdb_ID9013 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_169_rc REXdb_ID6556 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Sbicolor255_17_rc REXdb_ID2904 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGATCC (tRNA-Met) - not tested Sbicolor255_170 REXdb_ID1919 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Sbicolor255_172_rc REXdb_ID6862 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_176 REXdb_ID3563 Ty1/copia_CL413 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCACCTCCG (tRNA-Leu) - not tested Sbicolor255_177_rc REXdb_ID6928 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_179 REXdb_ID9021 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_18_rc REXdb_ID7600 Ty3/gypsy_CL318 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_180_rc REXdb_ID12902 Ty3/gypsy_CL071 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Sbicolor255_181_rc REXdb_ID4562 Ty1/copia_CL106 (9) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Sbicolor255_182_rc REXdb_ID4563 Ty1/copia_CL070 (13) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCCGG (tRNA-Met) - not tested Sbicolor255_183 REXdb_ID9080 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_185 REXdb_ID4564 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAAAGCC (tRNA-Met) - not tested Sbicolor255_187_rc REXdb_ID3564 Ty1/copia_CL123 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAAGCC (tRNA-Met) - not tested Sbicolor255_188_rc REXdb_ID875 Ty1/copia_CL142 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGTAG (tRNA-?) - not tested Sbicolor255_189 REXdb_ID876 Ty1/copia_CL142 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGCCT (tRNA-?) - not tested Sbicolor255_19 REXdb_ID9057 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_190_rc REXdb_ID6874 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_191 REXdb_ID6858 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_192_rc REXdb_ID9109 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_193 REXdb_ID9020 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + + - 5 TGGCGCGCTAGGTAGGGGTC (tRNA-Arg) - not tested Sbicolor255_195_rc REXdb_ID6882 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_196_rc REXdb_ID9070 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_197 REXdb_ID6545 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Sbicolor255_2 REXdb_ID6875 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_20_rc REXdb_ID3565 Ty1/copia_CL123 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Sbicolor255_200_rc REXdb_ID6533 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Sbicolor255_201_rc REXdb_ID9596 Ty3/gypsy_CL060 (18) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGGG (tRNA-Lys) - not tested Sbicolor255_203 REXdb_ID6906 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_206_rc REXdb_ID6853 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_207 REXdb_ID6542 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Sbicolor255_209_rc REXdb_ID13134 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCGCGGT (tRNA-?) - not tested Sbicolor255_21 REXdb_ID9098 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_210_rc REXdb_ID9099 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - + not tested not tested 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_212_rc REXdb_ID12904 Ty3/gypsy_CL071 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 6 TGGGAGTTTTTC (tRNA-?) - not tested Sbicolor255_214 REXdb_ID9022 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_215 REXdb_ID9048 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_216_rc REXdb_ID9105 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_217_rc REXdb_ID12897 Ty3/gypsy_CL071 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + - + 5 TGGTATCAGAGCA (tRNA-Met) - not tested Sbicolor255_219_rc REXdb_ID9049 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_22_rc REXdb_ID4567 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Sbicolor255_221_rc REXdb_ID4565 Ty1/copia_CL175 (6) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Sbicolor255_222 REXdb_ID6916 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sbicolor255_223_rc REXdb_ID9034 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_224_rc REXdb_ID6864 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_225_rc REXdb_ID4566 Ty1/copia_CL175 (6) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 6 - - not tested Sbicolor255_226 REXdb_ID11914 Ty3/gypsy_CL182 (4) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Sbicolor255_227 REXdb_ID2905 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - + - 5 TGGTATCGGCCG (tRNA-?) - not tested Sbicolor255_230 REXdb_ID6911 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 4 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sbicolor255_231 REXdb_ID6534 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Sbicolor255_232_rc REXdb_ID4568 Ty1/copia_CL106 (9) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATGAGAGC (tRNA-Met) - not tested Sbicolor255_233 REXdb_ID4569 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCCGG (tRNA-Met) - not tested Sbicolor255_234_rc REXdb_ID4570 Ty1/copia_CL128 (7) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sbicolor255_235_rc REXdb_ID9104 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 4 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_238_rc REXdb_ID8984 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGATAGGGGTC (tRNA-Arg) - not tested Sbicolor255_239_rc REXdb_ID9118 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_24_rc REXdb_ID877 Ty1/copia_CL701 (1) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCTAGAG (tRNA-?) - not tested Sbicolor255_242_rc REXdb_ID12794 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Sbicolor255_244 REXdb_ID9115 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_246_rc REXdb_ID9062 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_247 REXdb_ID6917 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_248 REXdb_ID9113 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_25_rc REXdb_ID9094 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_251 REXdb_ID9114 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_254 REXdb_ID9082 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGG (tRNA-Arg) - not tested Sbicolor255_255_rc REXdb_ID878 Ty1/copia_CL137 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sbicolor255_258 REXdb_ID12796 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 4 - - not tested Sbicolor255_261 REXdb_ID4790 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - - not tested Sbicolor255_262_rc REXdb_ID3566 Ty1/copia_CL407 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sbicolor255_267_rc REXdb_ID4571 Ty1/copia_CL106 (9) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTAGT (tRNA-Met) - not tested Sbicolor255_269 REXdb_ID8894 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Sbicolor255_270 REXdb_ID9006 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Sbicolor255_272 REXdb_ID9055 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_274_rc REXdb_ID9053 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCTAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_277 REXdb_ID6863 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_279 REXdb_ID6915 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 - - not tested Sbicolor255_280 REXdb_ID6908 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCATGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_281 REXdb_ID879 Ty1/copia_CL414 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Sbicolor255_283_rc REXdb_ID9063 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_285 REXdb_ID6899 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_289 REXdb_ID6567 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAACG (tRNA-Asp) - not tested Sbicolor255_29 REXdb_ID9064 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_293_rc REXdb_ID6926 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_297 REXdb_ID12802 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sbicolor255_299_rc REXdb_ID9012 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_3_rc REXdb_ID880 Ty1/copia_CL168 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCGAGCT (tRNA-?) - not tested Sbicolor255_300_rc REXdb_ID6871 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_303 REXdb_ID6885 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_308_rc REXdb_ID6888 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_309_rc REXdb_ID6914 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_31 REXdb_ID2906 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGTCG (tRNA-?) - not tested Sbicolor255_310_rc REXdb_ID1920 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Sbicolor255_312 REXdb_ID9111 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_314_rc REXdb_ID6877 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_317_rc REXdb_ID6546 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Sbicolor255_319_rc REXdb_ID6552 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Sbicolor255_321_rc REXdb_ID12903 Ty3/gypsy_CL071 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Sbicolor255_324_rc REXdb_ID6856 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 - - not tested Sbicolor255_328 REXdb_ID6886 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCTCGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_329_rc REXdb_ID9027 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_33 REXdb_ID4572 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + + - - 5 TGGTATCAAAGCAAGGTT (tRNA-Ile) - not tested Sbicolor255_332_rc REXdb_ID12905 Ty3/gypsy_CL071 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Sbicolor255_337 REXdb_ID9077 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_339_rc REXdb_ID6859 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_34 REXdb_ID12901 Ty3/gypsy_CL071 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Sbicolor255_340_rc REXdb_ID8979 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_344 REXdb_ID13120 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACGGT (tRNA-?) - not tested Sbicolor255_345_rc REXdb_ID3567 Ty1/copia_CL600 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sbicolor255_348 REXdb_ID6560 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAACG (tRNA-Asp) - not tested Sbicolor255_350_rc REXdb_ID6903 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_352_rc REXdb_ID9001 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_353 REXdb_ID9078 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCGCCAGGTA (tRNA-Arg) - not tested Sbicolor255_354_rc REXdb_ID6557 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 - - not tested Sbicolor255_356 REXdb_ID6570 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGG (tRNA-Asp) - not tested Sbicolor255_358_rc REXdb_ID6562 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAATG (tRNA-Asp) - not tested Sbicolor255_359_rc REXdb_ID13149 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAAATA (tRNA-?) - not tested Sbicolor255_364 REXdb_ID6563 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCACCGTTGCCGGGGAACG (tRNA-Asp) - not tested Sbicolor255_368 REXdb_ID6568 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAACG (tRNA-Asp) - not tested Sbicolor255_37 REXdb_ID9582 Ty3/gypsy_CL060 (18) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCCC (tRNA-Lys) - not tested Sbicolor255_373 REXdb_ID6539 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Sbicolor255_374_rc REXdb_ID6900 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + - - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_376 REXdb_ID3568 Ty1/copia_CL138 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Sbicolor255_385 REXdb_ID11905 Ty3/gypsy_CL137 (6) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Sbicolor255_386_rc REXdb_ID6878 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_388_rc REXdb_ID8976 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_389_rc REXdb_ID6549 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Sbicolor255_390_rc REXdb_ID6868 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_392 REXdb_ID12786 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 - - not tested Sbicolor255_393_rc REXdb_ID1921 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Sbicolor255_394 REXdb_ID8994 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_395_rc REXdb_ID8995 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_396 REXdb_ID9002 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_397 REXdb_ID9014 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_398_rc REXdb_ID1922 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Sbicolor255_399_rc REXdb_ID9097 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_40 REXdb_ID9100 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_402 REXdb_ID9015 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Sbicolor255_404_rc REXdb_ID9095 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_405 REXdb_ID8987 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_406 REXdb_ID12866 Ty3/gypsy_CL052 (21) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAAAGCC (tRNA-Met) - not tested Sbicolor255_409 REXdb_ID9028 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_41 REXdb_ID4573 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Sbicolor255_410_rc REXdb_ID9047 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_412_rc REXdb_ID8985 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Sbicolor255_413_rc REXdb_ID6855 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_414 REXdb_ID9071 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_415 REXdb_ID12986 Ty3/gypsy_CL107 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGCATCGGAGC (tRNA-?) - not tested Sbicolor255_417_rc REXdb_ID8993 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_42_rc REXdb_ID13137 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACGGT (tRNA-?) - not tested Sbicolor255_420_rc REXdb_ID6912 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCTCGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_424_rc REXdb_ID9007 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_425 REXdb_ID9035 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + + - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_426_rc REXdb_ID6896 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACACCCGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_427_rc REXdb_ID9030 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGTGTCAGGTAGGGGT (tRNA-Arg) - not tested Sbicolor255_429_rc REXdb_ID8988 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_43_rc REXdb_ID2907 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCGGCCG (tRNA-?) - not tested Sbicolor255_434 REXdb_ID6535 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCTTTGCCGGGGA (tRNA-Asp) - not tested Sbicolor255_438_rc REXdb_ID9031 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_439_rc REXdb_ID9051 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_44_rc REXdb_ID9008 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_440 REXdb_ID6569 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAACG (tRNA-Asp) - not tested Sbicolor255_443_rc REXdb_ID9023 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_447_rc REXdb_ID9033 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_448 REXdb_ID9044 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_45 REXdb_ID6880 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_450 REXdb_ID9016 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_453 REXdb_ID6544 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Sbicolor255_454_rc REXdb_ID8980 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGTGCGCCAGGTAGGGGTC (tRNA-Arg) - not tested Sbicolor255_455 REXdb_ID9050 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_456_rc REXdb_ID6892 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACACCTGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_457 REXdb_ID8996 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGATAGGGGTC (tRNA-Arg) - not tested Sbicolor255_458 REXdb_ID9042 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_46 REXdb_ID3569 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sbicolor255_460 REXdb_ID6565 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAACG (tRNA-Asp) - not tested Sbicolor255_464 REXdb_ID6909 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_468 REXdb_ID6541 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCACCGTTGCCAGGGA (tRNA-Asp) - not tested Sbicolor255_469_rc REXdb_ID9072 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_471 REXdb_ID6931 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_475_rc REXdb_ID6890 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sbicolor255_476 REXdb_ID6913 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_477 REXdb_ID6854 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_48_rc REXdb_ID4574 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCTAAGTT (tRNA-Ile) - not tested Sbicolor255_480_rc REXdb_ID12988 Ty3/gypsy_CL107 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGCATCGGAGC (tRNA-?) - not tested Sbicolor255_485_rc REXdb_ID6540 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Sbicolor255_486_rc REXdb_ID13749 Ty3/gypsy_CL680 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCGGAGA (tRNA-?) - not tested Sbicolor255_487 REXdb_ID881 Ty1/copia_CL120 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACACT (tRNA-?) - not tested Sbicolor255_49 REXdb_ID13439 Ty3/gypsy_CL243 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCGGAGA (tRNA-?) - not tested Sbicolor255_491 REXdb_ID9018 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_493_rc REXdb_ID9000 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_496_rc REXdb_ID6530 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Sbicolor255_503_rc REXdb_ID4575 Ty1/copia_CL175 (6) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGCATCGGAGC (tRNA-?) - not tested Sbicolor255_508 REXdb_ID9045 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_51 REXdb_ID13132 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGCAG (tRNA-?) - not tested Sbicolor255_516_rc REXdb_ID6555 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGCCGTTGCCTGGGA (tRNA-Asp) - not tested Sbicolor255_517 REXdb_ID9083 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_519 REXdb_ID6867 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_52 REXdb_ID9589 Ty3/gypsy_CL060 (18) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCCACCGTGGGGCCCGAA (tRNA-Lys) - not tested Sbicolor255_520 REXdb_ID6920 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 6 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_523_rc REXdb_ID12987 Ty3/gypsy_CL107 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGCATCGGAGC (tRNA-?) - not tested Sbicolor255_524_rc REXdb_ID6872 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_531_rc REXdb_ID9029 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_532_rc REXdb_ID9039 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_534 REXdb_ID6918 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_535_rc REXdb_ID9036 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_540 REXdb_ID6865 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_545_rc REXdb_ID9019 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_546 REXdb_ID6887 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_548_rc REXdb_ID8990 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_55_rc REXdb_ID9088 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_550_rc REXdb_ID8981 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_551 REXdb_ID6884 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_554_rc REXdb_ID12985 Ty3/gypsy_CL107 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGCATCGGAGC (tRNA-?) - not tested Sbicolor255_558_rc REXdb_ID6548 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila - + + + + - - - - - not tested not tested 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Sbicolor255_563_rc REXdb_ID6558 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAACG (tRNA-Asp) - not tested Sbicolor255_566_rc REXdb_ID6553 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Sbicolor255_567 REXdb_ID6551 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Sbicolor255_57 REXdb_ID13063 Ty3/gypsy_CL234 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAAAGCCAT (tRNA-Met) - not tested Sbicolor255_570 REXdb_ID4576 Ty1/copia_CL175 (6) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sbicolor255_571_rc REXdb_ID13553 Ty3/gypsy_CL340 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Sbicolor255_573 REXdb_ID6543 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Sbicolor255_579_rc REXdb_ID6930 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre - + + + + + - - - + not tested not tested 5 TGGCACGCCCAGTGGGACTTGA (tRNA-Arg) - not tested Sbicolor255_58_rc REXdb_ID9103 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTA (tRNA-Arg) - not tested Sbicolor255_580_rc REXdb_ID6537 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGTCGTTGCCGGGGA (tRNA-Asp) - not tested Sbicolor255_583 REXdb_ID9065 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_585 REXdb_ID9040 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_587_rc REXdb_ID6564 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAATG (tRNA-Asp) - not tested Sbicolor255_588 REXdb_ID12870 Ty3/gypsy_CL052 (21) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Sbicolor255_59_rc REXdb_ID12981 Ty3/gypsy_CL107 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGCATCGGAGC (tRNA-?) - not tested Sbicolor255_591 REXdb_ID6919 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 4 - - not tested Sbicolor255_593 REXdb_ID9085 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_595_rc REXdb_ID12900 Ty3/gypsy_CL071 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Sbicolor255_596 REXdb_ID6921 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 - - not tested Sbicolor255_597_rc REXdb_ID9073 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_60 REXdb_ID9009 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_600 REXdb_ID6547 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Sbicolor255_601 REXdb_ID12898 Ty3/gypsy_CL071 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Sbicolor255_603_rc REXdb_ID6860 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sbicolor255_605_rc REXdb_ID6532 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Sbicolor255_606_rc REXdb_ID9084 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_607 REXdb_ID9075 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_608 REXdb_ID12984 Ty3/gypsy_CL107 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGCATCGGAGC (tRNA-?) - not tested Sbicolor255_609 REXdb_ID12799 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAAAGCAAGG (tRNA-Ile) - not tested Sbicolor255_61 REXdb_ID882 Ty1/copia_CL142 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCCTAG (tRNA-Met) - not tested Sbicolor255_611_rc REXdb_ID12982 Ty3/gypsy_CL107 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGCATCGGAGC (tRNA-?) - not tested Sbicolor255_615 REXdb_ID9110 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGTGCGCCAGGTAGGGG (tRNA-Arg) - not tested Sbicolor255_616_rc REXdb_ID12869 Ty3/gypsy_CL052 (21) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAAAGCC (tRNA-Met) - not tested Sbicolor255_618_rc REXdb_ID9116 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 4 - - not tested Sbicolor255_619_rc REXdb_ID6869 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 - - not tested Sbicolor255_623 REXdb_ID9089 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGTGCCAGGTAGGGG (tRNA-Arg) - not tested Sbicolor255_628 REXdb_ID12872 Ty3/gypsy_CL052 (21) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Sbicolor255_629 REXdb_ID6923 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACTC (tRNA-Arg) - not tested Sbicolor255_63_rc REXdb_ID3570 Ty1/copia_CL413 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCACCTCCG (tRNA-Leu) - not tested Sbicolor255_630 REXdb_ID6550 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 - - not tested Sbicolor255_631 REXdb_ID6554 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGTCGGGGAA (tRNA-Asp) - not tested Sbicolor255_635_rc REXdb_ID12800 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCAAGG (tRNA-Met) - not tested Sbicolor255_637 REXdb_ID13133 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACGGT (tRNA-?) - not tested Sbicolor255_639 REXdb_ID6929 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACACCCGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_64_rc REXdb_ID9060 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_643_rc REXdb_ID4577 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Sbicolor255_644 REXdb_ID6559 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAACG (tRNA-Asp) - not tested Sbicolor255_648_rc REXdb_ID6922 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCTCGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_649_rc REXdb_ID6924 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCTCGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_652 REXdb_ID4578 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAAAGCTAAGTT (tRNA-Met) - not tested Sbicolor255_653 REXdb_ID4579 Ty1/copia_CL175 (6) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCGGAGCCAAG (tRNA-Met) - not tested Sbicolor255_654 REXdb_ID12867 Ty3/gypsy_CL052 (21) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sbicolor255_655 REXdb_ID9041 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + + - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_656 REXdb_ID6881 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_657 REXdb_ID6866 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_658_rc REXdb_ID8977 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_66_rc REXdb_ID2908 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAATCG (tRNA-?) - not tested Sbicolor255_661 REXdb_ID9003 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGTCAGGTAGGGGTC (tRNA-Arg) - not tested Sbicolor255_665_rc REXdb_ID3571 Ty1/copia_CL123 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Sbicolor255_666_rc REXdb_ID9117 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_667 REXdb_ID8978 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_668 REXdb_ID8991 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_671 REXdb_ID13146 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACGGT (tRNA-?) - not tested Sbicolor255_673_rc REXdb_ID2584 Ty1/copia_CL104 (9) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - + + 5 - - - Sbicolor255_677 REXdb_ID6891 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_678_rc REXdb_ID13750 Ty3/gypsy_CL681 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTACTCAGAG (tRNA-?) - not tested Sbicolor255_683_rc REXdb_ID9074 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_685 REXdb_ID6531 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Sbicolor255_687 REXdb_ID9101 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_688_rc REXdb_ID9046 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCCA (tRNA-Arg) - not tested Sbicolor255_69_rc REXdb_ID6529 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Sbicolor255_690_rc REXdb_ID8982 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_691 REXdb_ID6902 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_693 REXdb_ID883 Ty1/copia_CL595 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sbicolor255_696 REXdb_ID6873 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_698_rc REXdb_ID12893 Ty3/gypsy_CL071 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCAGGTTTCC (tRNA-Met) - not tested Sbicolor255_699_rc REXdb_ID2585 Ty1/copia_CL211 (5) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Sbicolor255_7_rc REXdb_ID6861 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_700 REXdb_ID8997 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_701_rc REXdb_ID4580 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCTAAGTT (tRNA-Ile) - not tested Sbicolor255_702_rc REXdb_ID9587 Ty3/gypsy_CL060 (18) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCCCGAA (tRNA-Lys) - not tested Sbicolor255_704_rc REXdb_ID9037 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_705 REXdb_ID6566 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAACG (tRNA-Asp) - not tested Sbicolor255_706_rc REXdb_ID12894 Ty3/gypsy_CL071 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAAAGTCAGGTTTC (tRNA-Met) - not tested Sbicolor255_707_rc REXdb_ID4581 Ty1/copia_CL106 (9) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 - - not tested Sbicolor255_708 REXdb_ID9061 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_710 REXdb_ID6538 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Sbicolor255_712 REXdb_ID8989 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_714 REXdb_ID13062 Ty3/gypsy_CL234 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + - - 4 - - not tested Sbicolor255_715 REXdb_ID4582 Ty1/copia_CL106 (9) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Sbicolor255_717_rc REXdb_ID8992 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Sbicolor255_719_rc REXdb_ID9112 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_72_rc REXdb_ID884 Ty1/copia_CL596 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sbicolor255_720 REXdb_ID6889 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_721_rc REXdb_ID13751 Ty3/gypsy_CL682 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCGGATT (tRNA-?) - not tested Sbicolor255_726 REXdb_ID6536 Ty3/gypsy_CL037 (43) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGA (tRNA-Asp) - not tested Sbicolor255_727 REXdb_ID6925 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGTGGGACTAA (tRNA-Asp) - not tested Sbicolor255_729_rc REXdb_ID4583 Ty1/copia_CL175 (6) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sbicolor255_730 REXdb_ID6927 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 - - not tested Sbicolor255_731_rc REXdb_ID9025 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Sbicolor255_732_rc REXdb_ID2586 Ty1/copia_CL211 (5) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Sbicolor255_736 REXdb_ID8986 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_740_rc REXdb_ID9032 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Sbicolor255_743 REXdb_ID12792 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Sbicolor255_745_rc REXdb_ID12793 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Sbicolor255_747_rc REXdb_ID8998 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_748 REXdb_ID3572 Ty1/copia_CL415 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATGGTGTC (tRNA-?) - not tested Sbicolor255_749_rc REXdb_ID9076 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_75 REXdb_ID9010 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGATAGGGGTC (tRNA-Arg) - not tested Sbicolor255_750_rc REXdb_ID9107 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_751 REXdb_ID4584 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Sbicolor255_754_rc REXdb_ID4585 Ty1/copia_CL106 (9) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Sbicolor255_755 REXdb_ID9595 Ty3/gypsy_CL060 (18) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGGGCTCGAAG (tRNA-Arg) - not tested Sbicolor255_757_rc REXdb_ID9090 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_76 REXdb_ID2909 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGCCG (tRNA-?) - not tested Sbicolor255_760_rc REXdb_ID9004 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_761_rc REXdb_ID13138 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACGGT (tRNA-?) - not tested Sbicolor255_763 REXdb_ID6907 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCTCGGTGGGACT (tRNA-Arg) - not tested Sbicolor255_765 REXdb_ID9067 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_766_rc REXdb_ID885 Ty1/copia_CL601 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCTCGCT (tRNA-?) - not tested Sbicolor255_769 REXdb_ID3573 Ty1/copia_CL123 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAAGCC (tRNA-Met) - not tested Sbicolor255_77_rc REXdb_ID12899 Ty3/gypsy_CL071 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Sbicolor255_772_rc REXdb_ID8892 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Sbicolor255_774 REXdb_ID886 Ty1/copia_CL120 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGCCG (tRNA-?) - not tested Sbicolor255_775_rc REXdb_ID9017 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_776 REXdb_ID9581 Ty3/gypsy_CL060 (18) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCCCGAA (tRNA-Lys) - not tested Sbicolor255_777 REXdb_ID6905 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 4 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_78_rc REXdb_ID9588 Ty3/gypsy_CL060 (18) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCC (tRNA-Lys) - not tested Sbicolor255_785_rc REXdb_ID887 Ty1/copia_CL168 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCCTCTC (tRNA-?) - not tested Sbicolor255_786_rc REXdb_ID9583 Ty3/gypsy_CL060 (18) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCCACCGTGGGGCCC (tRNA-Lys) - not tested Sbicolor255_788_rc REXdb_ID9038 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_789_rc REXdb_ID6897 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCTCGGTGGGAC (tRNA-Arg) - not tested Sbicolor255_79_rc REXdb_ID13753 Ty3/gypsy_CL684 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCCAGAG (tRNA-?) - not tested Sbicolor255_791 REXdb_ID12895 Ty3/gypsy_CL071 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCAGGTTTCC (tRNA-Met) - not tested Sbicolor255_792 REXdb_ID3574 Ty1/copia_CL123 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Sbicolor255_793_rc REXdb_ID13752 Ty3/gypsy_CL683 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sbicolor255_795_rc REXdb_ID12790 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Sbicolor255_796 REXdb_ID12896 Ty3/gypsy_CL071 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 6 TGGTATCAGAGCCAGGTTTCC (tRNA-Met) - not tested Sbicolor255_798_rc REXdb_ID6904 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_799 REXdb_ID9106 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_8 REXdb_ID6898 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 6 - - not tested Sbicolor255_800_rc REXdb_ID3575 Ty1/copia_CL600 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAAGCGAGGT (tRNA-Met) - not tested Sbicolor255_801_rc REXdb_ID6857 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_802_rc REXdb_ID13145 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGCTA (tRNA-?) - not tested Sbicolor255_803_rc REXdb_ID888 Ty1/copia_CL601 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACACG (tRNA-?) - not tested Sbicolor255_804 REXdb_ID3576 Ty1/copia_CL123 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Sbicolor255_805_rc REXdb_ID13129 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCGCGAT (tRNA-?) - not tested Sbicolor255_807 REXdb_ID9108 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_809_rc REXdb_ID3577 Ty1/copia_CL123 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Sbicolor255_810_rc REXdb_ID4586 Ty1/copia_CL106 (9) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCCTAGT (tRNA-Met) - not tested Sbicolor255_811 REXdb_ID2587 Ty1/copia_CL104 (9) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - + + 5 - - CGTTATCAGCAC (tRNA-Ile) Sbicolor255_812_rc REXdb_ID2910 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCGGCCG (tRNA-?) - not tested Sbicolor255_813 REXdb_ID9066 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_814_rc REXdb_ID9590 Ty3/gypsy_CL060 (18) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCCCGAA (tRNA-Lys) - not tested Sbicolor255_817 REXdb_ID9058 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_818_rc REXdb_ID2911 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAAG (tRNA-Leu) - not tested Sbicolor255_819_rc REXdb_ID9594 Ty3/gypsy_CL060 (18) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCTGGGAAGA (tRNA-Gln) - not tested Sbicolor255_82 REXdb_ID12795 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 - - not tested Sbicolor255_820_rc REXdb_ID889 Ty1/copia_CL040 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGA (tRNA-Met) - not tested Sbicolor255_821_rc REXdb_ID12797 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Sbicolor255_822_rc REXdb_ID8999 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGTCC (tRNA-Arg) - not tested Sbicolor255_825_rc REXdb_ID2588 Ty1/copia_CL104 (9) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - + - 5 - - CGTTATCAGCAC (tRNA-Ile) Sbicolor255_829_rc REXdb_ID2912 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGACG (tRNA-?) - not tested Sbicolor255_83 REXdb_ID9068 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_830 REXdb_ID12871 Ty3/gypsy_CL052 (21) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sbicolor255_831_rc REXdb_ID12983 Ty3/gypsy_CL107 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGCATCGGAGC (tRNA-?) - not tested Sbicolor255_834 REXdb_ID2589 Ty1/copia_CL104 (9) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - + + 5 - - - Sbicolor255_836_rc REXdb_ID890 Ty1/copia_CL702 (1) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sbicolor255_837_rc REXdb_ID13440 Ty3/gypsy_CL243 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCGGAGA (tRNA-?) - not tested Sbicolor255_838 REXdb_ID2913 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGCCG (tRNA-?) - not tested Sbicolor255_839_rc REXdb_ID9091 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_84_rc REXdb_ID9591 Ty3/gypsy_CL060 (18) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCCCGAA (tRNA-Lys) - not tested Sbicolor255_840_rc REXdb_ID2590 Ty1/copia_CL211 (5) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGA (tRNA-Ile) Sbicolor255_841_rc REXdb_ID2591 Ty1/copia_CL104 (9) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - + + 5 - - CGTTATCAGCAC (tRNA-Ile) Sbicolor255_842 REXdb_ID9584 Ty3/gypsy_CL060 (18) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCTCGAA (tRNA-Lys) - not tested Sbicolor255_843 REXdb_ID9102 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_845 REXdb_ID9026 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGTGCCAGGTAGGGGTC (tRNA-Arg) - not tested Sbicolor255_848_rc REXdb_ID6895 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_85_rc REXdb_ID9011 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Sbicolor255_850 REXdb_ID9086 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_851_rc REXdb_ID6883 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sbicolor255_852 REXdb_ID13754 Ty3/gypsy_CL685 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCGCGAT (tRNA-?) - not tested Sbicolor255_86_rc REXdb_ID8893 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Sbicolor255_87 REXdb_ID8983 Ty3/gypsy_CL023 (77) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGATC (tRNA-Arg) - not tested Sbicolor255_88 REXdb_ID9592 Ty3/gypsy_CL060 (18) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCCACCGTGGGGCTCGAG (tRNA-Lys) - not tested Sbicolor255_9 REXdb_ID9093 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_90 REXdb_ID9586 Ty3/gypsy_CL060 (18) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCCACCGTGGGGCCCG (tRNA-Lys) - not tested Sbicolor255_91_rc REXdb_ID13441 Ty3/gypsy_CL243 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGTGT (tRNA-?) - not tested Sbicolor255_92 REXdb_ID9059 Ty3/gypsy_CL024 (67) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGGT (tRNA-Arg) - not tested Sbicolor255_94_rc REXdb_ID12801 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Sbicolor255_95_rc REXdb_ID12868 Ty3/gypsy_CL052 (21) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sbicolor255_96 REXdb_ID12791 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Sbicolor255_97 REXdb_ID9593 Ty3/gypsy_CL060 (18) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCACCCACCGTGGGGCC (tRNA-Lys) - not tested Sbicolor255_98 REXdb_ID6901 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested SetI1_ID107 REXdb_ID12043 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested SilL1_ID241 REXdb_ID12044 Ty3/gypsy_CL686 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - not tested not tested not tested not tested SilL2_ID242 REXdb_ID12045 Ty3/gypsy_CL687 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - not tested not tested not tested not tested Sitalica164_1_rc REXdb_ID4795 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Sitalica164_100 REXdb_ID11483 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1001 REXdb_ID7181 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1002_rc REXdb_ID1923 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1004 REXdb_ID9242 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGAAAGGTAGG (tRNA-Arg) - not tested Sitalica164_1005 REXdb_ID1924 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1006_rc REXdb_ID1925 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1007 REXdb_ID12707 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1008_rc REXdb_ID11405 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1009_rc REXdb_ID7007 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_101 REXdb_ID1926 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1011 REXdb_ID12746 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1012 REXdb_ID12471 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_102_rc REXdb_ID1931 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1020_rc REXdb_ID1927 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1021_rc REXdb_ID12729 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1022 REXdb_ID11372 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1023_rc REXdb_ID12482 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1024_rc REXdb_ID12726 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Sitalica164_1025 REXdb_ID1928 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Sitalica164_1027_rc REXdb_ID1929 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1028_rc REXdb_ID1930 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1029 REXdb_ID11394 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_103_rc REXdb_ID11406 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 6 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1030_rc REXdb_ID1932 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1031 REXdb_ID7049 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1032 REXdb_ID11418 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1033_rc REXdb_ID11490 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 4 - - not tested Sitalica164_1034 REXdb_ID1933 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1035 REXdb_ID4791 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Sitalica164_1036 REXdb_ID11458 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1039_rc REXdb_ID891 Ty1/copia_CL414 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_104_rc REXdb_ID11367 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1040 REXdb_ID13755 Ty3/gypsy_CL688 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATT (tRNA-Met) - not tested Sitalica164_1041_rc REXdb_ID9286 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGTCGAG (tRNA-?) - not tested Sitalica164_1042 REXdb_ID2914 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - + + 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_1043_rc REXdb_ID1934 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1044_rc REXdb_ID12397 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_1045_rc REXdb_ID1935 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1046_rc REXdb_ID8951 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 - - not tested Sitalica164_1048 REXdb_ID1936 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCATGAG (tRNA-?) - not tested Sitalica164_105 REXdb_ID7146 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre - + + + + + - - - - not tested not tested 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1050_rc REXdb_ID12750 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 4 - - not tested Sitalica164_1052_rc REXdb_ID7076 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1053 REXdb_ID12408 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCGGGTTT (tRNA-Met) - not tested Sitalica164_1055 REXdb_ID8907 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCACGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_1056_rc REXdb_ID1937 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 - - not tested Sitalica164_1057_rc REXdb_ID7222 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1058_rc REXdb_ID4587 Ty1/copia_CL070 (13) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 - - not tested Sitalica164_1059_rc REXdb_ID3578 Ty1/copia_CL298 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Sitalica164_106 REXdb_ID11365 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_1060 REXdb_ID7212 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1061_rc REXdb_ID6946 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1062_rc REXdb_ID7084 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 - - not tested Sitalica164_1063 REXdb_ID7233 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGT (tRNA-Arg) - not tested Sitalica164_1065_rc REXdb_ID892 Ty1/copia_CL414 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_1067_rc REXdb_ID6934 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1068_rc REXdb_ID7195 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCTCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_107_rc REXdb_ID11407 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1071 REXdb_ID2915 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - + + 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_1073 REXdb_ID6938 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1074_rc REXdb_ID13442 Ty3/gypsy_CL244 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATTC (tRNA-Met) - not tested Sitalica164_1075_rc REXdb_ID8923 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_1077 REXdb_ID7008 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + - - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1078 REXdb_ID6995 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1079_rc REXdb_ID2916 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - + + 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_1080 REXdb_ID2917 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_1081 REXdb_ID7066 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1082_rc REXdb_ID12783 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + + 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1084_rc REXdb_ID5292 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_1085 REXdb_ID8968 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_1086 REXdb_ID893 Ty1/copia_CL416 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAACAGAGCCA (tRNA-Met) - not tested Sitalica164_1087 REXdb_ID8947 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_1089_rc REXdb_ID894 Ty1/copia_CL080 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_109 REXdb_ID1938 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1090_rc REXdb_ID5293 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1091 REXdb_ID13756 Ty3/gypsy_CL689 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1095_rc REXdb_ID2918 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_1097_rc REXdb_ID2919 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_1098 REXdb_ID6984 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1099 REXdb_ID1939 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_11 REXdb_ID3579 Ty1/copia_CL417 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_110 REXdb_ID1940 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 - - not tested Sitalica164_1101 REXdb_ID7077 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCTCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1102_rc REXdb_ID7089 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1103_rc REXdb_ID5294 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1104_rc REXdb_ID7103 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1105 REXdb_ID12437 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - - - - + + - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_111_rc REXdb_ID9256 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCACCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_1112 REXdb_ID2920 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - + 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_1113_rc REXdb_ID7167 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1114 REXdb_ID7042 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1115_rc REXdb_ID12712 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGGCTAATCAA (tRNA-Thr) - not tested Sitalica164_1116_rc REXdb_ID1941 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1117 REXdb_ID8896 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_1118 REXdb_ID7156 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1119_rc REXdb_ID5295 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_112 REXdb_ID1942 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1120_rc REXdb_ID895 Ty1/copia_CL141 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_1121 REXdb_ID1943 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1122 REXdb_ID7201 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1123_rc REXdb_ID1944 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1124 REXdb_ID1945 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1125 REXdb_ID7182 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1126_rc REXdb_ID9712 Ty3/gypsy_CL184 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 4 TGGTGCCCACCG (tRNA-Lys) - not tested Sitalica164_1128 REXdb_ID1946 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1129_rc REXdb_ID2921 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - + 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_113 REXdb_ID1947 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCATGAG (tRNA-?) - not tested Sitalica164_1130 REXdb_ID1948 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1131 REXdb_ID1949 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1132 REXdb_ID2922 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - + + 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_1135_rc REXdb_ID6939 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1137_rc REXdb_ID1950 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1138_rc REXdb_ID1951 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1139_rc REXdb_ID6956 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCATGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1140 REXdb_ID6968 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1141_rc REXdb_ID1952 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_1142 REXdb_ID7196 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1143_rc REXdb_ID7063 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1145_rc REXdb_ID1953 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1146_rc REXdb_ID7172 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1147 REXdb_ID1954 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1148_rc REXdb_ID5296 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_1149 REXdb_ID12426 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_115 REXdb_ID1955 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1150_rc REXdb_ID7050 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1152 REXdb_ID7252 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1153 REXdb_ID1956 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 - - not tested Sitalica164_1154 REXdb_ID1957 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_1155_rc REXdb_ID2923 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_1156 REXdb_ID1958 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1157_rc REXdb_ID12441 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 4 TGGCATCAGAGC (tRNA-Met) - not tested Sitalica164_1158 REXdb_ID7016 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCTCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1159_rc REXdb_ID1959 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_116_rc REXdb_ID1962 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1161_rc REXdb_ID1960 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1163_rc REXdb_ID1961 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1165_rc REXdb_ID13122 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACGGT (tRNA-?) - not tested Sitalica164_1166 REXdb_ID7105 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1167_rc REXdb_ID12507 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 5 TGGTATCAGAGCCGG (tRNA-Met) - not tested Sitalica164_1168_rc REXdb_ID7183 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1169_rc REXdb_ID12405 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_117_rc REXdb_ID12420 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - not tested not tested 5 TGGTACTAGAGC (tRNA-?) - not tested Sitalica164_1170_rc REXdb_ID1963 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1171_rc REXdb_ID1964 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1172 REXdb_ID1965 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1173_rc REXdb_ID1966 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1174 REXdb_ID12735 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1175_rc REXdb_ID12468 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCAGGTTTAG (tRNA-Met) - not tested Sitalica164_1176 REXdb_ID1967 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1178_rc REXdb_ID6947 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1179_rc REXdb_ID1968 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela - + + + + - - - - - not tested not tested 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_118 REXdb_ID1969 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1180 REXdb_ID7039 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1181 REXdb_ID8973 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_1182_rc REXdb_ID6948 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1184 REXdb_ID3580 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1185_rc REXdb_ID1970 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAAGCC (tRNA-Met) - not tested Sitalica164_1186 REXdb_ID8927 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_1188_rc REXdb_ID1971 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_1189_rc REXdb_ID1972 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_119 REXdb_ID9264 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAAGTAGGGG (tRNA-Arg) - not tested Sitalica164_1190_rc REXdb_ID11373 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1191_rc REXdb_ID1973 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1192_rc REXdb_ID11453 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAACTT (tRNA-?) - not tested Sitalica164_1194 REXdb_ID1974 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1195_rc REXdb_ID11457 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1197 REXdb_ID11429 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1198_rc REXdb_ID1975 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1199 REXdb_ID12708 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCAAGTT (tRNA-Met) - not tested Sitalica164_1200_rc REXdb_ID12710 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1201 REXdb_ID7245 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGATGGGAC (tRNA-Arg) - not tested Sitalica164_1202_rc REXdb_ID12753 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1203_rc REXdb_ID1976 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1204_rc REXdb_ID9261 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_1205_rc REXdb_ID11383 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1206_rc REXdb_ID11448 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1207_rc REXdb_ID11487 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1208_rc REXdb_ID11387 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_121_rc REXdb_ID1980 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1210_rc REXdb_ID7051 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1212 REXdb_ID1977 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1213_rc REXdb_ID11399 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1214_rc REXdb_ID1978 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCATAGC (tRNA-Met) - not tested Sitalica164_1215 REXdb_ID11470 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1217 REXdb_ID11374 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1218 REXdb_ID11369 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 4 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1219_rc REXdb_ID1979 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_122 REXdb_ID7141 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1220_rc REXdb_ID1981 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1222_rc REXdb_ID12513 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_1223 REXdb_ID9279 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCACCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_1225_rc REXdb_ID1982 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1226 REXdb_ID1983 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1229_rc REXdb_ID1984 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1230_rc REXdb_ID7168 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1233_rc REXdb_ID11411 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1234_rc REXdb_ID11400 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1235_rc REXdb_ID11471 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1236 REXdb_ID6969 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1237_rc REXdb_ID7009 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1239 REXdb_ID6985 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_124_rc REXdb_ID1987 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1241_rc REXdb_ID7130 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACACCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1242_rc REXdb_ID1985 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Sitalica164_1243 REXdb_ID12483 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_1244 REXdb_ID7190 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCTCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1245_rc REXdb_ID1986 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 - - not tested Sitalica164_1248 REXdb_ID9266 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - - not tested not tested 5 - - not tested Sitalica164_125 REXdb_ID1988 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGGC (tRNA-?) - not tested Sitalica164_1250_rc REXdb_ID9254 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCACGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_1251_rc REXdb_ID12464 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_1253_rc REXdb_ID1989 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1254_rc REXdb_ID1990 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1255 REXdb_ID12720 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1256_rc REXdb_ID12734 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1258_rc REXdb_ID7255 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1259_rc REXdb_ID12788 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_126 REXdb_ID1991 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1260 REXdb_ID7203 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1261_rc REXdb_ID8900 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_1262 REXdb_ID2924 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - + - 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_1263 REXdb_ID1992 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 - - not tested Sitalica164_1264 REXdb_ID7109 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1266 REXdb_ID12855 Ty3/gypsy_CL052 (21) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + + 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1267_rc REXdb_ID896 Ty1/copia_CL168 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCTGCCC (tRNA-?) - not tested Sitalica164_1269 REXdb_ID1993 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_127 REXdb_ID1994 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1270_rc REXdb_ID1995 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1271 REXdb_ID12769 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + + 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1273 REXdb_ID9275 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 - - not tested Sitalica164_1274 REXdb_ID7227 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCTCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1277_rc REXdb_ID1996 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1278 REXdb_ID7043 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1279 REXdb_ID6970 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_128_rc REXdb_ID1999 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1280 REXdb_ID7162 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1281 REXdb_ID6971 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1282_rc REXdb_ID1997 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1283 REXdb_ID12857 Ty3/gypsy_CL052 (21) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1284 REXdb_ID9290 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - not tested not tested - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_1285 REXdb_ID1998 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_1286_rc REXdb_ID7191 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1287_rc REXdb_ID12501 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_1288 REXdb_ID12715 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_129_rc REXdb_ID12723 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Sitalica164_1291_rc REXdb_ID7173 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1292_rc REXdb_ID5297 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1293 REXdb_ID7131 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGTCCGG (tRNA-?) - not tested Sitalica164_1294 REXdb_ID897 Ty1/copia_CL223 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Sitalica164_1298 REXdb_ID12486 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_1299_rc REXdb_ID2000 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 - - not tested Sitalica164_13 REXdb_ID4588 Ty1/copia_CL070 (13) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTAAG (tRNA-Met) - not tested Sitalica164_130 REXdb_ID12413 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_1300_rc REXdb_ID8971 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + + - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_1301_rc REXdb_ID7017 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGACTCGAA (tRNA-Arg) - not tested Sitalica164_1302 REXdb_ID7080 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAT (tRNA-Arg) - not tested Sitalica164_1303_rc REXdb_ID2001 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1304 REXdb_ID12461 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_1305_rc REXdb_ID898 Ty1/copia_CL602 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_1306 REXdb_ID8954 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCATGCCAGG (tRNA-?) - not tested Sitalica164_1307 REXdb_ID2002 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1309 REXdb_ID12463 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_131 REXdb_ID2003 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1310_rc REXdb_ID899 Ty1/copia_CL300 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 - - not tested Sitalica164_1311 REXdb_ID6996 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1312 REXdb_ID12407 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_1313_rc REXdb_ID12751 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1314_rc REXdb_ID7117 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1315 REXdb_ID4589 Ty1/copia_CL070 (13) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1316_rc REXdb_ID900 Ty1/copia_CL040 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAATCG (tRNA-?) - not tested Sitalica164_1317 REXdb_ID901 Ty1/copia_CL603 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Sitalica164_1318_rc REXdb_ID2004 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1319 REXdb_ID8914 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_132 REXdb_ID7174 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1322 REXdb_ID12469 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1323_rc REXdb_ID2005 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1324_rc REXdb_ID7106 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCTCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1325 REXdb_ID9250 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGAA (tRNA-Arg) - not tested Sitalica164_1327_rc REXdb_ID2006 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1328_rc REXdb_ID4590 Ty1/copia_CL070 (13) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1330 REXdb_ID3581 Ty1/copia_CL405 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_1331_rc REXdb_ID12428 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1332_rc REXdb_ID9285 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCACCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_1333 REXdb_ID2007 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1334 REXdb_ID12861 Ty3/gypsy_CL052 (21) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + + 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Sitalica164_1335 REXdb_ID12424 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1336 REXdb_ID9269 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGAGCGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_1337_rc REXdb_ID2008 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_1338_rc REXdb_ID7098 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 - - not tested Sitalica164_1339 REXdb_ID2009 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATTAGAGCC (tRNA-Met) - not tested Sitalica164_134 REXdb_ID11454 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1340_rc REXdb_ID8970 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_1341 REXdb_ID6932 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1343_rc REXdb_ID2010 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1344_rc REXdb_ID11370 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1345 REXdb_ID2011 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_135_rc REXdb_ID2013 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1351_rc REXdb_ID6986 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1353_rc REXdb_ID7027 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1355_rc REXdb_ID2012 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATTAGAGCC (tRNA-Met) - not tested Sitalica164_1357_rc REXdb_ID8942 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_1358_rc REXdb_ID12733 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1359_rc REXdb_ID11479 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGTTT (tRNA-?) - not tested Sitalica164_136_rc REXdb_ID2017 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCAGG (tRNA-Met) - not tested Sitalica164_1361 REXdb_ID2014 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1362 REXdb_ID11442 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1363 REXdb_ID11491 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1364 REXdb_ID7132 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1365 REXdb_ID8948 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_1366_rc REXdb_ID2015 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1367 REXdb_ID2016 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1368 REXdb_ID12756 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Sitalica164_137 REXdb_ID2018 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1370 REXdb_ID3582 Ty1/copia_CL138 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Sitalica164_1372 REXdb_ID7214 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1373 REXdb_ID2019 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - + - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1375_rc REXdb_ID6972 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre - + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1376_rc REXdb_ID902 Ty1/copia_CL040 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACGCG (tRNA-?) - not tested Sitalica164_1378 REXdb_ID7186 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_138_rc REXdb_ID11912 Ty3/gypsy_CL182 (4) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 4 TGGTAACAGAGCC (tRNA-Met) - not tested Sitalica164_1380 REXdb_ID11401 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1381_rc REXdb_ID2020 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1384_rc REXdb_ID7075 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1386 REXdb_ID2021 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATTAGAGCC (tRNA-Met) - not tested Sitalica164_1387 REXdb_ID11449 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - + 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1388 REXdb_ID7197 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_139_rc REXdb_ID9715 Ty3/gypsy_CL184 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCACCCACTGTGGT (tRNA-Undet) - not tested Sitalica164_1390_rc REXdb_ID6987 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1392_rc REXdb_ID2022 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 4 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1393_rc REXdb_ID11431 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - + 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1394_rc REXdb_ID6973 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1395 REXdb_ID12447 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 - - not tested Sitalica164_1397_rc REXdb_ID2023 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1398 REXdb_ID9284 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGTGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_14_rc REXdb_ID8963 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_140_rc REXdb_ID7204 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1400 REXdb_ID12508 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1402 REXdb_ID12776 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + + 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1404_rc REXdb_ID2024 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1405 REXdb_ID8959 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_1407_rc REXdb_ID2925 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_1408 REXdb_ID2025 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1409 REXdb_ID12414 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_141_rc REXdb_ID7184 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1410_rc REXdb_ID2026 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1411 REXdb_ID7250 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1412_rc REXdb_ID12449 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1413 REXdb_ID11463 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1414 REXdb_ID2027 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_1415_rc REXdb_ID7192 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 4 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1416 REXdb_ID11464 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCCGTTT (tRNA-?) - not tested Sitalica164_1417_rc REXdb_ID2028 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1418 REXdb_ID7175 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1419 REXdb_ID6974 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_142_rc REXdb_ID12446 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1420_rc REXdb_ID12421 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - not tested not tested + - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1421_rc REXdb_ID9713 Ty3/gypsy_CL184 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCCACCGTGGT (tRNA-Lys) - not tested Sitalica164_1422 REXdb_ID2029 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1423_rc REXdb_ID2030 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1424_rc REXdb_ID7018 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGT (tRNA-Arg) - not tested Sitalica164_1426 REXdb_ID7110 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1427 REXdb_ID3583 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1428_rc REXdb_ID12725 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1429_rc REXdb_ID7072 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 - - not tested Sitalica164_143_rc REXdb_ID903 Ty1/copia_CL300 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_1430_rc REXdb_ID9294 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGTGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_1431_rc REXdb_ID9268 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCACGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_1432_rc REXdb_ID8897 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_1435 REXdb_ID7010 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACACCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1436_rc REXdb_ID12450 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1437 REXdb_ID7011 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1438_rc REXdb_ID8909 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_1439 REXdb_ID8936 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAG (tRNA-Arg) - not tested Sitalica164_1440_rc REXdb_ID7031 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1441_rc REXdb_ID11336 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_1442 REXdb_ID7260 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 - - not tested Sitalica164_1443_rc REXdb_ID7198 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCTCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1444_rc REXdb_ID7095 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1446_rc REXdb_ID7111 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1447_rc REXdb_ID12748 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + + + 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_145_rc REXdb_ID12417 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCAGGTTTAG (tRNA-Met) - not tested Sitalica164_1450_rc REXdb_ID12713 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1451_rc REXdb_ID904 Ty1/copia_CL142 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGCCT (tRNA-?) - not tested Sitalica164_1452 REXdb_ID7052 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1453_rc REXdb_ID905 Ty1/copia_CL040 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACGCG (tRNA-?) - not tested Sitalica164_1454_rc REXdb_ID7142 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACACCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1455 REXdb_ID7187 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1456 REXdb_ID11379 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1457 REXdb_ID8939 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_1458 REXdb_ID8937 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_1459 REXdb_ID906 Ty1/copia_CL223 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_146_rc REXdb_ID8924 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCACCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_1460_rc REXdb_ID2926 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - + + 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_1461_rc REXdb_ID2927 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_1462 REXdb_ID6957 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1463 REXdb_ID13560 Ty3/gypsy_CL346 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATTAGAGCC (tRNA-Met) - not tested Sitalica164_1465 REXdb_ID12489 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_1466_rc REXdb_ID907 Ty1/copia_CL602 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATTAGAG (tRNA-?) - not tested Sitalica164_1468_rc REXdb_ID6949 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1469_rc REXdb_ID7034 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1471_rc REXdb_ID2928 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_1472_rc REXdb_ID3584 Ty1/copia_CL138 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCACG (tRNA-Met) - not tested Sitalica164_1473 REXdb_ID3585 Ty1/copia_CL417 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_1475 REXdb_ID2929 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_1476 REXdb_ID12862 Ty3/gypsy_CL052 (21) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1477 REXdb_ID12773 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1478_rc REXdb_ID6950 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1479 REXdb_ID6951 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_148 REXdb_ID9258 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCACGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_1480 REXdb_ID7208 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1482 REXdb_ID12853 Ty3/gypsy_CL052 (21) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + + + 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1483_rc REXdb_ID7209 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 - - not tested Sitalica164_1484_rc REXdb_ID5298 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1486 REXdb_ID12390 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGCATCAGAGC (tRNA-Met) - not tested Sitalica164_1488_rc REXdb_ID2031 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_149 REXdb_ID7053 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1492 REXdb_ID8925 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_1493_rc REXdb_ID7133 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1494 REXdb_ID12770 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1495_rc REXdb_ID908 Ty1/copia_CL168 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCTGCCC (tRNA-?) - not tested Sitalica164_1496 REXdb_ID2032 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1497_rc REXdb_ID3586 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1498 REXdb_ID4792 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTAT not tested Sitalica164_1499_rc REXdb_ID2033 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_15_rc REXdb_ID8916 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_150_rc REXdb_ID9295 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCGTCAAGTAGGGG (tRNA-Arg) - not tested Sitalica164_1501 REXdb_ID11354 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_1504 REXdb_ID2034 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_1505 REXdb_ID2035 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1506_rc REXdb_ID7243 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + - - - - + - - 5 TGGCACGCTCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1507_rc REXdb_ID7157 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1508 REXdb_ID2036 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_151 REXdb_ID2037 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1510 REXdb_ID2038 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1511 REXdb_ID7044 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1512_rc REXdb_ID2039 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1513 REXdb_ID2040 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1515_rc REXdb_ID6975 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1518 REXdb_ID5299 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_1521 REXdb_ID909 Ty1/copia_CL033 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCC (tRNA-Met) - not tested Sitalica164_1523 REXdb_ID2041 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1524_rc REXdb_ID2042 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1526 REXdb_ID2043 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1529 REXdb_ID2044 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_153 REXdb_ID7019 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1530_rc REXdb_ID11459 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATTAGCTT (tRNA-?) - not tested Sitalica164_1531 REXdb_ID7176 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1532_rc REXdb_ID2045 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1533_rc REXdb_ID910 Ty1/copia_CL604 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - + - 5 TGGAATCACGAG (tRNA-?) - not tested Sitalica164_1534_rc REXdb_ID8958 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCTAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_1535 REXdb_ID2046 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1536 REXdb_ID3587 Ty1/copia_CL405 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Sitalica164_1538 REXdb_ID8953 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCACCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_1539_rc REXdb_ID11362 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_154 REXdb_ID2047 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1540 REXdb_ID2048 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 4 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1543 REXdb_ID11450 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1544 REXdb_ID2049 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1545_rc REXdb_ID12854 Ty3/gypsy_CL052 (21) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - + 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1546 REXdb_ID11466 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 4 TGGTATCAGAGCCAGGTT (tRNA-Met) - not tested Sitalica164_1548_rc REXdb_ID7134 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 - - not tested Sitalica164_1549_rc REXdb_ID11395 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_155_rc REXdb_ID7107 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1551 REXdb_ID6976 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1554 REXdb_ID2050 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1555 REXdb_ID11467 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1556 REXdb_ID2051 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1557 REXdb_ID7135 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGATGGGAC (tRNA-Arg) - not tested Sitalica164_156_rc REXdb_ID7215 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACT (tRNA-Arg) - not tested Sitalica164_1560 REXdb_ID2052 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1561_rc REXdb_ID2053 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1562 REXdb_ID11413 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1563_rc REXdb_ID2054 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1564_rc REXdb_ID11432 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1565 REXdb_ID11438 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1568 REXdb_ID9262 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGATC (tRNA-Arg) - not tested Sitalica164_157_rc REXdb_ID2061 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela - + + + + - - - - - not tested not tested 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1570 REXdb_ID2055 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1572_rc REXdb_ID2056 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1573 REXdb_ID2057 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTT (tRNA-Met) - not tested Sitalica164_1574_rc REXdb_ID2058 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1575 REXdb_ID2059 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1576_rc REXdb_ID2060 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1577_rc REXdb_ID11396 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1578_rc REXdb_ID12490 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCAAGTT (tRNA-Met) - not tested Sitalica164_1579_rc REXdb_ID5300 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGATCC (tRNA-Met) - not tested Sitalica164_1581 REXdb_ID2062 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1582 REXdb_ID7059 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCTCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1583_rc REXdb_ID2063 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1584_rc REXdb_ID2064 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1587_rc REXdb_ID11397 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1588_rc REXdb_ID11425 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_159 REXdb_ID7251 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1590 REXdb_ID11402 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1591_rc REXdb_ID9271 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGT (tRNA-Arg) - not tested Sitalica164_1593 REXdb_ID11486 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCACCTT (tRNA-?) - not tested Sitalica164_1595 REXdb_ID11462 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGTTT (tRNA-?) - not tested Sitalica164_1596_rc REXdb_ID11419 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1599_rc REXdb_ID6988 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_16 REXdb_ID6958 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCTCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1600 REXdb_ID2065 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1601_rc REXdb_ID12398 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_1602_rc REXdb_ID11495 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1603 REXdb_ID11488 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1604_rc REXdb_ID11388 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1606 REXdb_ID7169 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1607 REXdb_ID2066 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1608_rc REXdb_ID11415 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1609_rc REXdb_ID7045 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_161 REXdb_ID12436 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1610 REXdb_ID2067 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1611_rc REXdb_ID7083 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1612_rc REXdb_ID2068 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1613_rc REXdb_ID12511 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1614_rc REXdb_ID7020 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1615_rc REXdb_ID7253 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1617 REXdb_ID2069 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1618 REXdb_ID7246 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACACCCAGTGGGAT (tRNA-Arg) - not tested Sitalica164_162 REXdb_ID12495 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_1621_rc REXdb_ID7188 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCTCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1622_rc REXdb_ID9272 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCGCCAGGTAGGGGAA (tRNA-Arg) - not tested Sitalica164_1623_rc REXdb_ID2070 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1624 REXdb_ID2071 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTT (tRNA-Met) - not tested Sitalica164_1626_rc REXdb_ID911 Ty1/copia_CL040 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCATACG (tRNA-?) - not tested Sitalica164_1627 REXdb_ID7177 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACTCA (tRNA-Arg) - not tested Sitalica164_1628_rc REXdb_ID912 Ty1/copia_CL033 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCC (tRNA-Met) - not tested Sitalica164_1629_rc REXdb_ID6952 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_163_rc REXdb_ID7028 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 - - not tested Sitalica164_1630_rc REXdb_ID7238 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1633 REXdb_ID2072 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_1634 REXdb_ID12787 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTACAGAGCT (tRNA-?) - not tested Sitalica164_1635_rc REXdb_ID2073 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1637 REXdb_ID2074 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1639_rc REXdb_ID2930 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - + 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_164_rc REXdb_ID8944 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTA (tRNA-Arg) - not tested Sitalica164_1640_rc REXdb_ID6989 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACT (tRNA-Arg) - not tested Sitalica164_1641 REXdb_ID12743 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1643 REXdb_ID7136 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCTCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1644 REXdb_ID7220 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1646_rc REXdb_ID3588 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 - - not tested Sitalica164_1647_rc REXdb_ID2931 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - + 5 - - not tested Sitalica164_1648 REXdb_ID8932 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_1649 REXdb_ID8943 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTA (tRNA-Arg) - not tested Sitalica164_165_rc REXdb_ID2075 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1650 REXdb_ID2932 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_1651 REXdb_ID7152 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre - + + + + + - - - + not tested not tested 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1653 REXdb_ID913 Ty1/copia_CL605 (2) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_1656 REXdb_ID5301 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1659_rc REXdb_ID3589 Ty1/copia_CL571 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_166_rc REXdb_ID7088 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1660_rc REXdb_ID7143 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1661_rc REXdb_ID6940 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGGACCGTTACA (tRNA-Asp) - not tested Sitalica164_1662 REXdb_ID4793 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Sitalica164_1664 REXdb_ID7085 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1665_rc REXdb_ID2076 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1666 REXdb_ID6997 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1667 REXdb_ID7078 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1669 REXdb_ID2933 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - + 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_1671 REXdb_ID7029 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1672 REXdb_ID6998 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1674_rc REXdb_ID2077 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATTAGAGCC (tRNA-Met) - not tested Sitalica164_1675 REXdb_ID2078 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_1676 REXdb_ID7021 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1677_rc REXdb_ID12763 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - + 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1678 REXdb_ID914 Ty1/copia_CL412 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCACAG (tRNA-Arg) - not tested Sitalica164_1679_rc REXdb_ID6941 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_168 REXdb_ID13757 Ty3/gypsy_CL690 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Sitalica164_1680_rc REXdb_ID13445 Ty3/gypsy_CL245 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGACA (tRNA-Met) - not tested Sitalica164_1681 REXdb_ID5302 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_1682 REXdb_ID5303 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1683_rc REXdb_ID6999 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1685 REXdb_ID6959 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1686_rc REXdb_ID2934 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_1687_rc REXdb_ID2079 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1688_rc REXdb_ID8940 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCACGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_1689_rc REXdb_ID7022 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_169 REXdb_ID7163 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCATGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1690 REXdb_ID13446 Ty3/gypsy_CL245 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGACA (tRNA-Met) - not tested Sitalica164_1695_rc REXdb_ID13758 Ty3/gypsy_CL691 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGGGGTGGCGGTG (tRNA-Asn) - not tested Sitalica164_1696_rc REXdb_ID2080 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTT (tRNA-Met) - not tested Sitalica164_1697 REXdb_ID12709 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 4 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_17 REXdb_ID13117 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACGGT (tRNA-?) - not tested Sitalica164_170_rc REXdb_ID12454 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_1700 REXdb_ID12858 Ty3/gypsy_CL052 (21) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1702_rc REXdb_ID11913 Ty3/gypsy_CL182 (4) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGAATCAGAGCC (tRNA-Met) - not tested Sitalica164_1704_rc REXdb_ID6990 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1707 REXdb_ID12391 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_1708_rc REXdb_ID7056 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1709 REXdb_ID12477 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATTAGCAT (tRNA-?) - not tested Sitalica164_171 REXdb_ID7060 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1710_rc REXdb_ID12859 Ty3/gypsy_CL052 (21) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + + 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1711_rc REXdb_ID915 Ty1/copia_CL033 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATAGAGCC (tRNA-?) - not tested Sitalica164_1713_rc REXdb_ID9296 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGTGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_1714_rc REXdb_ID4794 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Sitalica164_1715 REXdb_ID7257 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + + - 5 TGGCACGCTCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1716_rc REXdb_ID12472 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTACCCGAGC (tRNA-?) - not tested Sitalica164_1717 REXdb_ID2081 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1719_rc REXdb_ID916 Ty1/copia_CL418 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_172 REXdb_ID12742 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1721 REXdb_ID7223 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1723 REXdb_ID7128 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1724_rc REXdb_ID8904 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_1725 REXdb_ID7129 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1727_rc REXdb_ID12856 Ty3/gypsy_CL052 (21) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1728_rc REXdb_ID3590 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1729_rc REXdb_ID2082 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_173 REXdb_ID9263 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGTGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_1730 REXdb_ID12744 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Sitalica164_1732 REXdb_ID7137 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1734 REXdb_ID9293 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_1735_rc REXdb_ID8905 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_1736 REXdb_ID2083 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_1737_rc REXdb_ID2084 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1738_rc REXdb_ID6977 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_174_rc REXdb_ID917 Ty1/copia_CL033 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCC (tRNA-Met) - not tested Sitalica164_1741_rc REXdb_ID7241 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1742_rc REXdb_ID2085 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1743 REXdb_ID7231 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1744 REXdb_ID2086 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1745 REXdb_ID12724 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1746_rc REXdb_ID2087 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGTC (tRNA-Met) - not tested Sitalica164_1747 REXdb_ID2088 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1748 REXdb_ID12502 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_175 REXdb_ID4591 Ty1/copia_CL070 (13) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCCGG (tRNA-Met) - not tested Sitalica164_1750_rc REXdb_ID12737 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 - - not tested Sitalica164_1752 REXdb_ID12439 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1753_rc REXdb_ID12401 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_1754 REXdb_ID2089 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1755_rc REXdb_ID2090 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1756 REXdb_ID2091 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1757 REXdb_ID2092 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1758 REXdb_ID11412 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_176_rc REXdb_ID12860 Ty3/gypsy_CL052 (21) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1760_rc REXdb_ID2093 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGTG (tRNA-?) - not tested Sitalica164_1762_rc REXdb_ID2094 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1763 REXdb_ID11441 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1766_rc REXdb_ID2095 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1767_rc REXdb_ID12749 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1769_rc REXdb_ID2096 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_177 REXdb_ID2097 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1770 REXdb_ID11386 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1771 REXdb_ID2098 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1772_rc REXdb_ID11443 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1774 REXdb_ID12433 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAAAGCA (tRNA-Ile) - not tested Sitalica164_1775 REXdb_ID12752 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1776 REXdb_ID2099 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Sitalica164_1777 REXdb_ID2100 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Sitalica164_1779 REXdb_ID7221 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACACCCGGTGGGACT (tRNA-Arg) - not tested Sitalica164_178 REXdb_ID5304 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1781_rc REXdb_ID12459 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCCGG (tRNA-Met) - not tested Sitalica164_1782_rc REXdb_ID2101 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1783 REXdb_ID7086 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 - - not tested Sitalica164_1784 REXdb_ID2102 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1786_rc REXdb_ID2103 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1787_rc REXdb_ID11476 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1788 REXdb_ID2104 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1789_rc REXdb_ID2105 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_179 REXdb_ID8917 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_1790 REXdb_ID12409 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 - - not tested Sitalica164_1791 REXdb_ID2106 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1794_rc REXdb_ID11416 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - not tested not tested 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1795 REXdb_ID2107 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_1797_rc REXdb_ID2108 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1798_rc REXdb_ID2109 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_180 REXdb_ID2110 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1800 REXdb_ID12727 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 4 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1802_rc REXdb_ID11408 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1803_rc REXdb_ID2111 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1804 REXdb_ID2112 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1806_rc REXdb_ID11420 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1807 REXdb_ID9265 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Sitalica164_1808 REXdb_ID2113 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1809 REXdb_ID2114 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_181 REXdb_ID7248 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1810_rc REXdb_ID11444 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1811 REXdb_ID2115 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTTTCAGAGCT (tRNA-Met) - not tested Sitalica164_1812 REXdb_ID2116 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCATAGCC (tRNA-Met) - not tested Sitalica164_1813_rc REXdb_ID12418 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_1814_rc REXdb_ID2117 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1816 REXdb_ID2118 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_1817 REXdb_ID12718 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1818 REXdb_ID2119 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1819_rc REXdb_ID11468 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_182 REXdb_ID5305 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1820 REXdb_ID12415 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + + 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_1822_rc REXdb_ID11451 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1823 REXdb_ID6953 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1824_rc REXdb_ID6960 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1825_rc REXdb_ID11384 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1826 REXdb_ID2120 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1828_rc REXdb_ID2121 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 - - not tested Sitalica164_1829 REXdb_ID2122 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_183 REXdb_ID8910 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCGCTAGGTAGGGGG (tRNA-Arg) - not tested Sitalica164_1831_rc REXdb_ID2123 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1832 REXdb_ID12766 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - + 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1833 REXdb_ID11455 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1834 REXdb_ID2124 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1835 REXdb_ID9246 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCACGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_1837_rc REXdb_ID12473 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 - - not tested Sitalica164_1838 REXdb_ID7090 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1839_rc REXdb_ID2125 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_184_rc REXdb_ID7000 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1840 REXdb_ID13557 Ty3/gypsy_CL343 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCCAGAG (tRNA-?) - not tested Sitalica164_1841 REXdb_ID8899 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_1843_rc REXdb_ID6933 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1845_rc REXdb_ID2126 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1846 REXdb_ID12780 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1848 REXdb_ID12496 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 5 TGGCATCAGAGC (tRNA-Met) - not tested Sitalica164_185_rc REXdb_ID6978 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1850 REXdb_ID2127 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1851_rc REXdb_ID12474 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_1852_rc REXdb_ID7205 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1853_rc REXdb_ID8928 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_1854_rc REXdb_ID8965 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAAGTAGGGG (tRNA-Arg) - not tested Sitalica164_1855_rc REXdb_ID8926 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_1856 REXdb_ID4592 Ty1/copia_CL070 (13) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1857 REXdb_ID918 Ty1/copia_CL141 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_1858_rc REXdb_ID12425 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCCTGGTTT (tRNA-Met) - not tested Sitalica164_1859_rc REXdb_ID2128 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_186 REXdb_ID919 Ty1/copia_CL040 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACACG (tRNA-?) - not tested Sitalica164_1860_rc REXdb_ID7030 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1861_rc REXdb_ID2129 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1862_rc REXdb_ID7254 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1863 REXdb_ID2130 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1864 REXdb_ID8974 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCTAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_1865 REXdb_ID3591 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 - - not tested Sitalica164_1866_rc REXdb_ID12510 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCAGGTTTAG (tRNA-Met) - not tested Sitalica164_1867 REXdb_ID2131 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Sitalica164_1868 REXdb_ID2132 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_1869 REXdb_ID920 Ty1/copia_CL418 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_1871 REXdb_ID7158 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1872 REXdb_ID7092 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1873 REXdb_ID11403 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 4 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1875_rc REXdb_ID2133 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1876_rc REXdb_ID9253 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_1877_rc REXdb_ID7001 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1878 REXdb_ID5306 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1879_rc REXdb_ID7118 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_188_rc REXdb_ID7138 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCTCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1883_rc REXdb_ID11478 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1884 REXdb_ID13022 Ty3/gypsy_CL142 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_1885_rc REXdb_ID3592 Ty1/copia_CL407 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Sitalica164_1888_rc REXdb_ID2134 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCATGAG (tRNA-?) - not tested Sitalica164_1889_rc REXdb_ID2135 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1890_rc REXdb_ID2136 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1891 REXdb_ID12755 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Sitalica164_1892 REXdb_ID6954 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1894_rc REXdb_ID2935 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_1895 REXdb_ID2137 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1896 REXdb_ID4593 Ty1/copia_CL070 (13) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCCGG (tRNA-Met) - not tested Sitalica164_1897 REXdb_ID7040 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1898 REXdb_ID7012 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGACTCGAA (tRNA-Arg) - not tested Sitalica164_1899 REXdb_ID7079 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_19_rc REXdb_ID6962 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_190_rc REXdb_ID2138 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1900_rc REXdb_ID6979 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_1903 REXdb_ID5307 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1906_rc REXdb_ID11480 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1907_rc REXdb_ID12506 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 4 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1909 REXdb_ID12422 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_191_rc REXdb_ID2141 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1911 REXdb_ID2936 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_1912 REXdb_ID7170 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCATGCCCGGTGG (tRNA-Arg) - not tested Sitalica164_1914_rc REXdb_ID2139 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCACAGCC (tRNA-Met) - not tested Sitalica164_1915_rc REXdb_ID9244 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_1916_rc REXdb_ID2140 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_192_rc REXdb_ID12387 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_1920_rc REXdb_ID11423 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_1922 REXdb_ID2142 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1923_rc REXdb_ID2143 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_1925_rc REXdb_ID2144 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_1926 REXdb_ID7228 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre - + + + + + - - - + not tested not tested 4 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_1928 REXdb_ID2145 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_1930 REXdb_ID6942 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_1931 REXdb_ID7023 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_194 REXdb_ID4594 Ty1/copia_CL070 (13) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCCGG (tRNA-Met) - not tested Sitalica164_1940_rc REXdb_ID12396 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 - - not tested Sitalica164_1943 REXdb_ID6961 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_195 REXdb_ID4595 Ty1/copia_CL070 (13) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCCGG (tRNA-Met) - not tested Sitalica164_196 REXdb_ID12389 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_197_rc REXdb_ID5308 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork - + + + + - - - - - not tested not tested 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_198 REXdb_ID12730 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_199 REXdb_ID6943 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_20_rc REXdb_ID9255 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGTGCGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_200 REXdb_ID13023 Ty3/gypsy_CL142 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 - - not tested Sitalica164_201_rc REXdb_ID8901 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_203 REXdb_ID2146 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_205_rc REXdb_ID13024 Ty3/gypsy_CL142 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_207 REXdb_ID12399 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 - - not tested Sitalica164_208_rc REXdb_ID2937 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_209 REXdb_ID2147 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_21_rc REXdb_ID2148 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_211 REXdb_ID7099 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_212_rc REXdb_ID2938 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_213 REXdb_ID5309 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 6 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_214_rc REXdb_ID7147 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_216_rc REXdb_ID7024 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_218_rc REXdb_ID13025 Ty3/gypsy_CL142 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_219_rc REXdb_ID921 Ty1/copia_CL033 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTACAGAGCC (tRNA-?) - not tested Sitalica164_222_rc REXdb_ID2149 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_223 REXdb_ID2150 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_224_rc REXdb_ID2151 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 - - not tested Sitalica164_227 REXdb_ID8972 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_228_rc REXdb_ID922 Ty1/copia_CL416 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAACAGAGCCA (tRNA-Met) - not tested Sitalica164_229 REXdb_ID7224 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_230 REXdb_ID2152 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_231_rc REXdb_ID2153 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_232 REXdb_ID5310 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_233 REXdb_ID8934 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_235 REXdb_ID2154 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_236_rc REXdb_ID9291 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGTGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_237_rc REXdb_ID2155 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_238 REXdb_ID2156 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_239 REXdb_ID2157 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_24 REXdb_ID2158 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 - - not tested Sitalica164_241_rc REXdb_ID6944 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_242 REXdb_ID2159 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 4 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_243_rc REXdb_ID12497 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 4 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_245 REXdb_ID2160 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_246_rc REXdb_ID2161 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_247_rc REXdb_ID7032 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_249_rc REXdb_ID2162 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_25_rc REXdb_ID7139 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_250 REXdb_ID7178 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 - - not tested Sitalica164_251 REXdb_ID12484 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATTAGAGCC (tRNA-Met) - not tested Sitalica164_252 REXdb_ID923 Ty1/copia_CL033 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCC (tRNA-Met) - not tested Sitalica164_253 REXdb_ID11389 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_254_rc REXdb_ID2163 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_256 REXdb_ID2164 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_258_rc REXdb_ID11390 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_259 REXdb_ID7261 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_26_rc REXdb_ID12491 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 4 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_260 REXdb_ID12429 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_264_rc REXdb_ID11348 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_265 REXdb_ID3593 Ty1/copia_CL563 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_266_rc REXdb_ID12498 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_267 REXdb_ID7206 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_268 REXdb_ID8933 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_269 REXdb_ID7073 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCTCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_27_rc REXdb_ID8906 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_270 REXdb_ID12419 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTACTAGAGC (tRNA-?) - not tested Sitalica164_271 REXdb_ID924 Ty1/copia_CL604 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 - - not tested Sitalica164_274 REXdb_ID3594 Ty1/copia_CL138 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Sitalica164_275 REXdb_ID9243 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_277_rc REXdb_ID2165 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_278 REXdb_ID2939 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_279 REXdb_ID8929 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_28_rc REXdb_ID12509 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_280_rc REXdb_ID2166 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_281 REXdb_ID2167 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGTC (tRNA-Met) - not tested Sitalica164_286_rc REXdb_ID12758 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - - - - + + - 4 - - not tested Sitalica164_287 REXdb_ID7054 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_289 REXdb_ID2168 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 4 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_291 REXdb_ID2169 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCATGAG (tRNA-?) - not tested Sitalica164_292 REXdb_ID12512 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay - + + + + - + - - - not tested not tested 4 TGGAACTTCCCA (tRNA-?) - not tested Sitalica164_294_rc REXdb_ID2170 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_295 REXdb_ID12745 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_297 REXdb_ID8918 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_3_rc REXdb_ID12465 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_30_rc REXdb_ID2172 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_302_rc REXdb_ID2171 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_303_rc REXdb_ID11391 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_304_rc REXdb_ID7164 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_305_rc REXdb_ID7242 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 - - not tested Sitalica164_306_rc REXdb_ID11375 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_308_rc REXdb_ID9288 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 4 - - not tested Sitalica164_309 REXdb_ID11409 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_31 REXdb_ID2173 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_312_rc REXdb_ID2174 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_313_rc REXdb_ID2175 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 4 - - not tested Sitalica164_314 REXdb_ID9282 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_315_rc REXdb_ID2176 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_316_rc REXdb_ID12504 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_318 REXdb_ID7179 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCTCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_319_rc REXdb_ID11376 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_320 REXdb_ID2177 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_321 REXdb_ID2178 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_322_rc REXdb_ID2179 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_324_rc REXdb_ID2180 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_326_rc REXdb_ID6991 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_327 REXdb_ID7046 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_328_rc REXdb_ID11460 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_329_rc REXdb_ID11392 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_33 REXdb_ID9247 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - - - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Sitalica164_330_rc REXdb_ID2181 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_331 REXdb_ID11433 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_332 REXdb_ID11469 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_334_rc REXdb_ID7091 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_335 REXdb_ID2182 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_336_rc REXdb_ID2183 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_338 REXdb_ID11382 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_34_rc REXdb_ID9276 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Sitalica164_340_rc REXdb_ID7199 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_341_rc REXdb_ID8945 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGTGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_342_rc REXdb_ID7144 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_343_rc REXdb_ID12442 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_345 REXdb_ID7057 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_347 REXdb_ID2184 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_348_rc REXdb_ID9257 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_349 REXdb_ID2185 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_35 REXdb_ID925 Ty1/copia_CL141 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_351_rc REXdb_ID2186 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 - - not tested Sitalica164_352_rc REXdb_ID2187 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_353_rc REXdb_ID926 Ty1/copia_CL142 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGGTTTT (tRNA-Met) - not tested Sitalica164_354 REXdb_ID7093 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_355 REXdb_ID12475 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_356_rc REXdb_ID2188 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_357 REXdb_ID12402 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCAGGTTC (tRNA-Met) - not tested Sitalica164_358_rc REXdb_ID8919 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_359_rc REXdb_ID7108 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAT (tRNA-Arg) - not tested Sitalica164_36_rc REXdb_ID2191 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_361 REXdb_ID2189 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_362_rc REXdb_ID3595 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 4 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_363_rc REXdb_ID8898 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_364_rc REXdb_ID12480 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAAAGCC (tRNA-Met) - not tested Sitalica164_365_rc REXdb_ID12747 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 4 TGGTATCAGAGCCA (tRNA-Met) - not tested Sitalica164_366_rc REXdb_ID7124 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_367 REXdb_ID2190 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_368 REXdb_ID9245 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_369_rc REXdb_ID2940 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - + 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_37 REXdb_ID2192 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGTC (tRNA-Met) - not tested Sitalica164_371 REXdb_ID9248 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGTGCACCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_373_rc REXdb_ID2193 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_374_rc REXdb_ID3596 Ty1/copia_CL406 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_377 REXdb_ID12739 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAACC (tRNA-Met) - not tested Sitalica164_378 REXdb_ID927 Ty1/copia_CL040 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACGCG (tRNA-?) - not tested Sitalica164_379 REXdb_ID12448 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + + + - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_380 REXdb_ID7112 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_382_rc REXdb_ID4597 Ty1/copia_CL070 (13) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTAAG (tRNA-Met) - not tested Sitalica164_383 REXdb_ID928 Ty1/copia_CL040 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAATCG (tRNA-?) - not tested Sitalica164_384_rc REXdb_ID2941 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - + 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_385_rc REXdb_ID11359 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_386_rc REXdb_ID12716 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Sitalica164_389 REXdb_ID5311 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 - - not tested Sitalica164_391 REXdb_ID7229 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 - - not tested Sitalica164_392_rc REXdb_ID2194 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_393_rc REXdb_ID7002 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_394_rc REXdb_ID3597 Ty1/copia_CL417 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_395 REXdb_ID929 Ty1/copia_CL040 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGACG (tRNA-?) - not tested Sitalica164_396_rc REXdb_ID2942 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - + + 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_397 REXdb_ID2195 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_399 REXdb_ID9297 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGTGCGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_4_rc REXdb_ID13759 Ty3/gypsy_CL692 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATTC (tRNA-Met) - not tested Sitalica164_40_rc REXdb_ID9281 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGAA (tRNA-Arg) - not tested Sitalica164_401 REXdb_ID930 Ty1/copia_CL223 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGCAATCAGAG (tRNA-?) - not tested Sitalica164_403 REXdb_ID2196 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_405_rc REXdb_ID2943 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_406_rc REXdb_ID13444 Ty3/gypsy_CL244 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGACGGG (tRNA-Leu) - not tested Sitalica164_407 REXdb_ID6935 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre - + + + + + - - - - not tested not tested 5 - - not tested Sitalica164_408_rc REXdb_ID12784 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_409 REXdb_ID2197 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_411_rc REXdb_ID931 Ty1/copia_CL594 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAACAGAGCC (tRNA-Met) - not tested Sitalica164_412 REXdb_ID7153 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAT (tRNA-Arg) - not tested Sitalica164_413_rc REXdb_ID932 Ty1/copia_CL040 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACACG (tRNA-?) - not tested Sitalica164_414 REXdb_ID933 Ty1/copia_CL412 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_415_rc REXdb_ID7262 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_416_rc REXdb_ID934 Ty1/copia_CL141 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_417_rc REXdb_ID2944 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - + + 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_418_rc REXdb_ID3598 Ty1/copia_CL415 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Sitalica164_42_rc REXdb_ID6945 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_420 REXdb_ID12444 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay - + + + + - + - - - not tested not tested 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_421 REXdb_ID7234 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAT (tRNA-Arg) - not tested Sitalica164_423 REXdb_ID2198 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_424_rc REXdb_ID12864 Ty3/gypsy_CL052 (21) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 TGGTATCAAAGCC (tRNA-Met) - not tested Sitalica164_425 REXdb_ID7069 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_426_rc REXdb_ID2199 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_427 REXdb_ID12494 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_429_rc REXdb_ID935 Ty1/copia_CL033 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCC (tRNA-Met) - not tested Sitalica164_430 REXdb_ID5312 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_432_rc REXdb_ID2200 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_434 REXdb_ID4796 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Sitalica164_435 REXdb_ID8964 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGTGCCAAGTAGGGG (tRNA-Arg) - not tested Sitalica164_436 REXdb_ID2201 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_438 REXdb_ID2202 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 - - not tested Sitalica164_439 REXdb_ID12395 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTAGCAGAGC (tRNA-Met) - not tested Sitalica164_440 REXdb_ID13125 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina - + + + + - + - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Sitalica164_441 REXdb_ID7235 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + + - - 5 TGGCATGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_442_rc REXdb_ID6955 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_443_rc REXdb_ID12431 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - - - - - + - 4 TGGTACTAGAGC (tRNA-?) - not tested Sitalica164_444 REXdb_ID12487 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_445_rc REXdb_ID11445 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_447_rc REXdb_ID12410 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCTAGGTTT (tRNA-Met) - not tested Sitalica164_448_rc REXdb_ID8960 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_449_rc REXdb_ID2203 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_45_rc REXdb_ID8912 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_450_rc REXdb_ID7217 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGACAAG (tRNA-Val) - not tested Sitalica164_451 REXdb_ID7193 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_452_rc REXdb_ID7239 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_453_rc REXdb_ID2204 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_457_rc REXdb_ID6980 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_458_rc REXdb_ID12771 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_459 REXdb_ID9270 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGTGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_46_rc REXdb_ID2206 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_460_rc REXdb_ID12411 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_462_rc REXdb_ID11358 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_464_rc REXdb_ID7055 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_465 REXdb_ID8957 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_467 REXdb_ID9292 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCACACCAGGTAGG (tRNA-Arg) - not tested Sitalica164_468 REXdb_ID2205 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_469_rc REXdb_ID6963 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCTCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_470 REXdb_ID12456 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_471_rc REXdb_ID12863 Ty3/gypsy_CL052 (21) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + + 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_474 REXdb_ID2207 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_475 REXdb_ID12438 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_476 REXdb_ID5313 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_478_rc REXdb_ID8895 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_479_rc REXdb_ID12781 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + + 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_480_rc REXdb_ID2208 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_481_rc REXdb_ID2209 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_482_rc REXdb_ID7113 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_483_rc REXdb_ID11434 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_485 REXdb_ID8935 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Sitalica164_486_rc REXdb_ID8962 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_487 REXdb_ID2210 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_488 REXdb_ID2211 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_489 REXdb_ID2212 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_49_rc REXdb_ID7140 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_490 REXdb_ID7240 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_493 REXdb_ID2213 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCATGAG (tRNA-?) - not tested Sitalica164_494 REXdb_ID2214 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_495_rc REXdb_ID7148 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_496_rc REXdb_ID12400 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 - - not tested Sitalica164_497 REXdb_ID7194 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_498 REXdb_ID2215 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_5_rc REXdb_ID12434 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 5 TGGTATCAAAGCC (tRNA-Met) - not tested Sitalica164_50_rc REXdb_ID2218 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 - - not tested Sitalica164_500_rc REXdb_ID11492 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_501_rc REXdb_ID12462 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 - - not tested Sitalica164_502_rc REXdb_ID8952 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGG (tRNA-Arg) - not tested Sitalica164_503_rc REXdb_ID2216 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_505 REXdb_ID11452 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATAAGCTT (tRNA-?) - not tested Sitalica164_507_rc REXdb_ID2217 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_511 REXdb_ID2219 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_512 REXdb_ID7225 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCTCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_513_rc REXdb_ID7171 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 - - not tested Sitalica164_514 REXdb_ID2220 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGGAG (tRNA-?) - not tested Sitalica164_515_rc REXdb_ID12765 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_519_rc REXdb_ID2221 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Sitalica164_52_rc REXdb_ID12785 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - + 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_520_rc REXdb_ID7216 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_521_rc REXdb_ID2222 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_522_rc REXdb_ID7070 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - + + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_523 REXdb_ID11494 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_525_rc REXdb_ID11461 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_526 REXdb_ID11414 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_527_rc REXdb_ID11398 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_528 REXdb_ID11435 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_529_rc REXdb_ID2223 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_53 REXdb_ID2224 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_530 REXdb_ID11436 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_532 REXdb_ID11475 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_533_rc REXdb_ID11489 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_534 REXdb_ID2225 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_536 REXdb_ID2226 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_537_rc REXdb_ID2227 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_54 REXdb_ID7064 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 4 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_543_rc REXdb_ID2228 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_544_rc REXdb_ID12732 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_545_rc REXdb_ID2229 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_546_rc REXdb_ID12757 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_547 REXdb_ID13443 Ty3/gypsy_CL244 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Sitalica164_548_rc REXdb_ID12779 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_550 REXdb_ID12452 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAAAGCC (tRNA-Met) - not tested Sitalica164_552 REXdb_ID2230 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_554 REXdb_ID2231 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_555_rc REXdb_ID11473 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM - + + + + - - + - - not tested not tested 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_556 REXdb_ID2232 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Sitalica164_557 REXdb_ID7236 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCATGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_560_rc REXdb_ID11335 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_561 REXdb_ID2233 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 - - not tested Sitalica164_562 REXdb_ID2234 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_563 REXdb_ID7149 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_564_rc REXdb_ID9298 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCCGGT (tRNA-Arg) - not tested Sitalica164_565 REXdb_ID8908 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_566_rc REXdb_ID936 Ty1/copia_CL605 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_568 REXdb_ID2235 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 - - not tested Sitalica164_569 REXdb_ID2236 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_570 REXdb_ID9287 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 - - not tested Sitalica164_571_rc REXdb_ID12500 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCCAGGTTTAG (tRNA-Met) - not tested Sitalica164_572 REXdb_ID2237 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_573_rc REXdb_ID9277 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGAA (tRNA-Arg) - not tested Sitalica164_574 REXdb_ID9274 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGAA (tRNA-Arg) - not tested Sitalica164_575_rc REXdb_ID2238 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_578_rc REXdb_ID12458 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_579_rc REXdb_ID7154 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_580_rc REXdb_ID7035 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_582 REXdb_ID7189 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_583_rc REXdb_ID8903 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_585_rc REXdb_ID2239 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_586 REXdb_ID5314 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_587 REXdb_ID2240 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_588 REXdb_ID2241 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_589 REXdb_ID2242 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_59_rc REXdb_ID9251 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGTGCCAGGTA (tRNA-Arg) - not tested Sitalica164_591_rc REXdb_ID12403 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_592 REXdb_ID8950 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Sitalica164_593 REXdb_ID12453 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_594 REXdb_ID7159 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_596 REXdb_ID11430 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_598_rc REXdb_ID2243 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_599_rc REXdb_ID8913 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_60_rc REXdb_ID11368 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_600 REXdb_ID12455 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 4 - - not tested Sitalica164_602 REXdb_ID12736 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + + 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_603_rc REXdb_ID11364 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_605 REXdb_ID2244 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_607_rc REXdb_ID13124 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACGGT (tRNA-?) - not tested Sitalica164_608_rc REXdb_ID7207 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_61 REXdb_ID11465 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_610 REXdb_ID4797 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTATT not tested Sitalica164_611_rc REXdb_ID7125 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_612_rc REXdb_ID2245 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATTAGAGCC (tRNA-Met) - not tested Sitalica164_613 REXdb_ID12476 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_614 REXdb_ID9283 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 - - not tested Sitalica164_615_rc REXdb_ID2246 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_616_rc REXdb_ID7104 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_617_rc REXdb_ID2247 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_618 REXdb_ID2248 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 - - not tested Sitalica164_619 REXdb_ID7003 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_62_rc REXdb_ID12738 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Sitalica164_620_rc REXdb_ID11360 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_621 REXdb_ID2249 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_622_rc REXdb_ID2250 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_623_rc REXdb_ID12394 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_624 REXdb_ID7160 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_626_rc REXdb_ID937 Ty1/copia_CL603 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_627 REXdb_ID8967 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCTCC (tRNA-?) - not tested Sitalica164_628 REXdb_ID2251 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGTC (tRNA-Met) - not tested Sitalica164_629_rc REXdb_ID2252 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_63 REXdb_ID7061 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACACCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_630_rc REXdb_ID7100 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_631 REXdb_ID7013 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_632 REXdb_ID7211 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_633_rc REXdb_ID12430 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_634_rc REXdb_ID12782 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_635_rc REXdb_ID13123 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACGGT (tRNA-?) - not tested Sitalica164_636 REXdb_ID7087 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_637_rc REXdb_ID8941 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTA (tRNA-Arg) - not tested Sitalica164_638_rc REXdb_ID7014 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_639 REXdb_ID12778 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_64_rc REXdb_ID2253 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_640 REXdb_ID12774 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + + 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_641_rc REXdb_ID7058 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_642 REXdb_ID938 Ty1/copia_CL141 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_643 REXdb_ID2945 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_644_rc REXdb_ID939 Ty1/copia_CL418 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_645_rc REXdb_ID12393 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_646 REXdb_ID7081 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_648_rc REXdb_ID12767 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - + 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_649 REXdb_ID940 Ty1/copia_CL040 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACGCG (tRNA-?) - not tested Sitalica164_65 REXdb_ID2254 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_651 REXdb_ID12764 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_653_rc REXdb_ID941 Ty1/copia_CL040 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACGCG (tRNA-?) - not tested Sitalica164_655_rc REXdb_ID12714 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_656 REXdb_ID2946 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_658_rc REXdb_ID3599 Ty1/copia_CL298 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Sitalica164_659_rc REXdb_ID7226 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_660 REXdb_ID5315 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Sitalica164_664 REXdb_ID942 Ty1/copia_CL223 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_665 REXdb_ID943 Ty1/copia_CL040 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACGGG (tRNA-?) - not tested Sitalica164_666_rc REXdb_ID13561 Ty3/gypsy_CL346 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATTAGAGCC (tRNA-Met) - not tested Sitalica164_667_rc REXdb_ID7150 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_668_rc REXdb_ID944 Ty1/copia_CL223 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_669_rc REXdb_ID12427 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + + 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_670_rc REXdb_ID2255 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_671 REXdb_ID8902 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_672 REXdb_ID945 Ty1/copia_CL597 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_673 REXdb_ID7119 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + - - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_674 REXdb_ID2256 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_675 REXdb_ID2257 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_676_rc REXdb_ID2258 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_677_rc REXdb_ID7004 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_678_rc REXdb_ID7015 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_679_rc REXdb_ID12423 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_68_rc REXdb_ID7165 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_680_rc REXdb_ID946 Ty1/copia_CL040 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACGCG (tRNA-?) - not tested Sitalica164_681 REXdb_ID2259 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_682_rc REXdb_ID7041 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_683 REXdb_ID7145 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_684 REXdb_ID7120 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 - - not tested Sitalica164_686 REXdb_ID2260 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_687 REXdb_ID12467 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Sitalica164_689 REXdb_ID7036 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_69 REXdb_ID3600 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 - - not tested Sitalica164_690 REXdb_ID947 Ty1/copia_CL040 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACGAG (tRNA-?) - not tested Sitalica164_691_rc REXdb_ID7155 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAG (tRNA-Lys) - not tested Sitalica164_692_rc REXdb_ID2261 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_693 REXdb_ID2262 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_694 REXdb_ID7094 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTG (tRNA-Arg) - not tested Sitalica164_695 REXdb_ID2263 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_696_rc REXdb_ID8961 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_697 REXdb_ID12493 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Sitalica164_698_rc REXdb_ID7259 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_699_rc REXdb_ID9267 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGTGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_7 REXdb_ID11377 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_700_rc REXdb_ID8966 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Sitalica164_701 REXdb_ID9252 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_702_rc REXdb_ID948 Ty1/copia_CL142 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGGTTTT (tRNA-Met) - not tested Sitalica164_703_rc REXdb_ID9280 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGTGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_704 REXdb_ID2264 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_706 REXdb_ID2265 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_708_rc REXdb_ID2266 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_709_rc REXdb_ID8915 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_711_rc REXdb_ID8949 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_712 REXdb_ID7121 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre - + + + + + - - - - not tested not tested 5 - - not tested Sitalica164_713_rc REXdb_ID2267 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_714 REXdb_ID12775 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + + + 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_716 REXdb_ID13119 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACGGT (tRNA-?) - not tested Sitalica164_718 REXdb_ID13130 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACGTT (tRNA-?) - not tested Sitalica164_719_rc REXdb_ID4798 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - AAAACCTTATT not tested Sitalica164_72_rc REXdb_ID7067 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCATGCCCGGTGGG (tRNA-Arg) - not tested Sitalica164_720 REXdb_ID2268 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_723 REXdb_ID11439 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGTTT (tRNA-?) - not tested Sitalica164_724 REXdb_ID2269 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_725_rc REXdb_ID2270 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_726_rc REXdb_ID2271 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_727_rc REXdb_ID7071 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_728_rc REXdb_ID7247 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 - - not tested Sitalica164_729_rc REXdb_ID2272 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_733_rc REXdb_ID12443 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_735 REXdb_ID7074 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_736_rc REXdb_ID6964 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCTCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_737 REXdb_ID11351 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 - - not tested Sitalica164_738_rc REXdb_ID13128 Ty3/gypsy_CL040 (34) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCACGTT (tRNA-?) - not tested Sitalica164_739_rc REXdb_ID7101 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_74_rc REXdb_ID11440 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_740_rc REXdb_ID2273 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_741_rc REXdb_ID7037 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_742 REXdb_ID12492 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_743_rc REXdb_ID8955 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_744_rc REXdb_ID3601 Ty1/copia_CL415 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_745_rc REXdb_ID12406 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_747 REXdb_ID4598 Ty1/copia_CL070 (13) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTAGCAGAGCCAG (tRNA-Met) - not tested Sitalica164_748 REXdb_ID11472 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_749_rc REXdb_ID2274 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_75 REXdb_ID2275 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_751_rc REXdb_ID7025 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 - - not tested Sitalica164_753 REXdb_ID9278 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - + - - 5 TGGCGCGCCAGGTAGGGA (tRNA-Arg) - not tested Sitalica164_754 REXdb_ID7200 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_755 REXdb_ID2276 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_758_rc REXdb_ID8946 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - + 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_76 REXdb_ID12435 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - - - + - + - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Sitalica164_760_rc REXdb_ID2277 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_761 REXdb_ID7005 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_762_rc REXdb_ID7161 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTG (tRNA-Arg) - not tested Sitalica164_763_rc REXdb_ID11456 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_764_rc REXdb_ID9714 Ty3/gypsy_CL184 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCCACCGTGGT (tRNA-Lys) - not tested Sitalica164_765_rc REXdb_ID11424 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_766 REXdb_ID2278 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_767_rc REXdb_ID2279 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_768_rc REXdb_ID12392 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGCATCAGAGC (tRNA-Met) - not tested Sitalica164_769_rc REXdb_ID7102 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_77 REXdb_ID7213 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_770_rc REXdb_ID2280 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_771 REXdb_ID2281 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_772 REXdb_ID2282 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_775_rc REXdb_ID11493 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGTTT (tRNA-?) - not tested Sitalica164_777_rc REXdb_ID2283 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCATGAG (tRNA-?) - not tested Sitalica164_778_rc REXdb_ID9273 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGTGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_779_rc REXdb_ID9289 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - - - - 5 TGGCGCGCAAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_78_rc REXdb_ID7115 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_780 REXdb_ID2284 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCATGAG (tRNA-?) - not tested Sitalica164_781_rc REXdb_ID11484 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGTTT (tRNA-?) - not tested Sitalica164_783_rc REXdb_ID11446 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_785_rc REXdb_ID11481 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_786_rc REXdb_ID11482 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_787 REXdb_ID11426 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_788 REXdb_ID7114 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 - - not tested Sitalica164_789_rc REXdb_ID11485 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_79_rc REXdb_ID12717 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + + + 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_790 REXdb_ID11410 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_791 REXdb_ID2285 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_792_rc REXdb_ID7202 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_793_rc REXdb_ID2286 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_794 REXdb_ID11357 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGGTT (tRNA-?) - not tested Sitalica164_795 REXdb_ID12451 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay - + + + + - + - - - not tested not tested 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_796_rc REXdb_ID12499 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_797_rc REXdb_ID11361 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGGTT (tRNA-?) - not tested Sitalica164_798_rc REXdb_ID2287 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_799_rc REXdb_ID2288 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_8 REXdb_ID7122 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCATGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_801_rc REXdb_ID7123 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_802 REXdb_ID2289 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGTC (tRNA-Met) - not tested Sitalica164_803_rc REXdb_ID7065 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACTCCCAGTGGGA (tRNA-Arg) - not tested Sitalica164_806 REXdb_ID11437 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_808_rc REXdb_ID2290 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_809 REXdb_ID2291 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_81_rc REXdb_ID11427 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_810 REXdb_ID2292 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_811 REXdb_ID11378 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_812 REXdb_ID5316 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_813_rc REXdb_ID13447 Ty3/gypsy_CL245 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGACA (tRNA-Met) - not tested Sitalica164_814_rc REXdb_ID2293 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 - - not tested Sitalica164_815 REXdb_ID8969 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCTGG (tRNA-?) - not tested Sitalica164_816_rc REXdb_ID8911 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_817 REXdb_ID2294 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_818 REXdb_ID2295 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_819_rc REXdb_ID2296 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 - - not tested Sitalica164_82_rc REXdb_ID11474 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_820_rc REXdb_ID9259 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCGCCAGGTAGGGGAA (tRNA-Arg) - not tested Sitalica164_822_rc REXdb_ID11477 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_823 REXdb_ID3602 Ty1/copia_CL404 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCATCAAGAG (tRNA-?) - not tested Sitalica164_824 REXdb_ID12768 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_825_rc REXdb_ID2297 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_826_rc REXdb_ID2298 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_827 REXdb_ID11393 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_828 REXdb_ID7230 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + - - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_829_rc REXdb_ID7237 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_830_rc REXdb_ID12432 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_831_rc REXdb_ID2299 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_832 REXdb_ID11385 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_833 REXdb_ID11404 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_835 REXdb_ID12740 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_836 REXdb_ID8930 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_837_rc REXdb_ID949 Ty1/copia_CL416 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAACAGAGCCA (tRNA-Met) - not tested Sitalica164_838_rc REXdb_ID12478 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_839 REXdb_ID11344 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_841 REXdb_ID12503 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + + 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_842_rc REXdb_ID7218 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACACCCAGTGGGACA (tRNA-Ile) - not tested Sitalica164_843_rc REXdb_ID6992 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_844 REXdb_ID12721 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_845_rc REXdb_ID7166 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_846 REXdb_ID7047 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_847_rc REXdb_ID2300 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_848_rc REXdb_ID12777 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + + + 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_849_rc REXdb_ID12440 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_850 REXdb_ID7219 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAG (tRNA-Arg) - not tested Sitalica164_852 REXdb_ID2301 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 4 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_853_rc REXdb_ID2302 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAACC (tRNA-Met) - not tested Sitalica164_854 REXdb_ID8931 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_855 REXdb_ID2303 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_856_rc REXdb_ID2304 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_857_rc REXdb_ID950 Ty1/copia_CL040 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACACG (tRNA-?) - not tested Sitalica164_858_rc REXdb_ID12488 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_859_rc REXdb_ID12485 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_86_rc REXdb_ID11371 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_860 REXdb_ID8956 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_861_rc REXdb_ID2305 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_862 REXdb_ID7244 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_863_rc REXdb_ID2306 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_864_rc REXdb_ID2307 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_866_rc REXdb_ID12754 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Sitalica164_869 REXdb_ID2308 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_871_rc REXdb_ID7096 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 - - not tested Sitalica164_872 REXdb_ID2309 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATGAGAGC (tRNA-Met) - not tested Sitalica164_873_rc REXdb_ID951 Ty1/copia_CL300 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Sitalica164_874_rc REXdb_ID2310 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_875_rc REXdb_ID12457 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - - - + - + - 5 TGGTTTCAGAGC (tRNA-Met) - not tested Sitalica164_876_rc REXdb_ID7082 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 - - not tested Sitalica164_877_rc REXdb_ID7062 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCTCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_878 REXdb_ID2311 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_879_rc REXdb_ID8920 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - + + not tested not tested 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_88_rc REXdb_ID12481 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - - - + - + - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_880_rc REXdb_ID8921 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_882 REXdb_ID2312 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_883 REXdb_ID4799 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - - not tested Sitalica164_884_rc REXdb_ID952 Ty1/copia_CL056 (16) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGGGC (tRNA-Leu) - not tested Sitalica164_885 REXdb_ID6981 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_886 REXdb_ID11421 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_887_rc REXdb_ID6993 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_888 REXdb_ID9260 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand - + + + + + - - - + not tested not tested 5 TGGCGCGTCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_889_rc REXdb_ID2313 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_891 REXdb_ID7038 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_892_rc REXdb_ID11447 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_893_rc REXdb_ID5317 Ty1/copia_CL028 (28) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_894_rc REXdb_ID11422 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_897 REXdb_ID2314 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_899_rc REXdb_ID2315 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_9_rc REXdb_ID13760 Ty3/gypsy_CL693 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATTCAGAC (tRNA-?) - not tested Sitalica164_90 REXdb_ID7249 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_900 REXdb_ID6965 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_901 REXdb_ID6966 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_903 REXdb_ID7185 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_904 REXdb_ID2316 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_906_rc REXdb_ID6936 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_907 REXdb_ID7180 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCATGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_908_rc REXdb_ID7126 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_909_rc REXdb_ID2317 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_910_rc REXdb_ID12479 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Sitalica164_912 REXdb_ID7116 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCTCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_913 REXdb_ID7232 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_914 REXdb_ID953 Ty1/copia_CL040 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGACG (tRNA-?) - not tested Sitalica164_915_rc REXdb_ID954 Ty1/copia_CL300 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_916_rc REXdb_ID955 Ty1/copia_CL033 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATAGAGCC (tRNA-?) - not tested Sitalica164_917_rc REXdb_ID7006 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_918 REXdb_ID2947 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_919 REXdb_ID2948 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - + + 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_92 REXdb_ID2318 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_920_rc REXdb_ID7033 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_921_rc REXdb_ID7256 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_922 REXdb_ID12505 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + + + 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_923 REXdb_ID12719 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAAAGCCAT (tRNA-Met) - not tested Sitalica164_927 REXdb_ID956 Ty1/copia_CL040 (23) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGACG (tRNA-?) - not tested Sitalica164_928 REXdb_ID9249 Ty3/gypsy_CL027 (57) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGTGCCAGGTAGGGG (tRNA-Arg) - not tested Sitalica164_93_rc REXdb_ID2320 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_930_rc REXdb_ID957 Ty1/copia_CL141 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_931_rc REXdb_ID12445 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_932_rc REXdb_ID2319 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_933 REXdb_ID12416 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_935_rc REXdb_ID12772 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTACCAGAGC (tRNA-?) - not tested Sitalica164_936 REXdb_ID6994 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCTGGTGGGAC (tRNA-Arg) - not tested Sitalica164_937 REXdb_ID12865 Ty3/gypsy_CL052 (21) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + + 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_94 REXdb_ID2321 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_940 REXdb_ID6982 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_941 REXdb_ID7151 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_942_rc REXdb_ID7048 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_943_rc REXdb_ID8938 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_944 REXdb_ID8922 Ty3/gypsy_CL022 (84) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + + - 5 TGGCGCGCCAGGTAGGGGA (tRNA-Arg) - not tested Sitalica164_945_rc REXdb_ID12741 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - + - + 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_946 REXdb_ID2949 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - + 5 TGGTATCAGACA (tRNA-?) - not tested Sitalica164_947 REXdb_ID2322 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_948_rc REXdb_ID6983 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCAGTGGGAC (tRNA-Arg) - not tested Sitalica164_949_rc REXdb_ID2323 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATAAAGAG (tRNA-?) - not tested Sitalica164_95 REXdb_ID2324 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_950 REXdb_ID12466 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - + - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_952_rc REXdb_ID2325 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Sitalica164_953_rc REXdb_ID7127 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGAC (tRNA-Arg) - not tested Sitalica164_954_rc REXdb_ID12722 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_955_rc REXdb_ID2326 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_956_rc REXdb_ID7097 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_957 REXdb_ID2327 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 - - not tested Sitalica164_959 REXdb_ID12731 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_963_rc REXdb_ID12711 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_964 REXdb_ID2328 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATTAGAGCC (tRNA-Met) - not tested Sitalica164_966_rc REXdb_ID2329 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_967_rc REXdb_ID2330 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_969 REXdb_ID2331 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_970_rc REXdb_ID12470 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Sitalica164_971_rc REXdb_ID3603 Ty1/copia_CL562 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCCTCAGAAC (tRNA-?) - not tested Sitalica164_973 REXdb_ID6967 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_974 REXdb_ID2332 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_975_rc REXdb_ID2333 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_976_rc REXdb_ID11417 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGCTT (tRNA-?) - not tested Sitalica164_978_rc REXdb_ID12762 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_979_rc REXdb_ID2334 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_98 REXdb_ID11341 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 4 TGGTAATCAGAG (tRNA-?) - not tested Sitalica164_980 REXdb_ID7026 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_981 REXdb_ID2335 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Sitalica164_982 REXdb_ID6937 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_983 REXdb_ID2336 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_984 REXdb_ID2337 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_986 REXdb_ID2338 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_987 REXdb_ID2339 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_989_rc REXdb_ID2340 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_99 REXdb_ID12412 Ty3/gypsy_CL008 (182) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Sitalica164_991_rc REXdb_ID7068 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - + - - 5 TGGCACGCCCGGTGGGACC (tRNA-Arg) - not tested Sitalica164_994 REXdb_ID12728 Ty3/gypsy_CL032 (52) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_995 REXdb_ID2341 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Sitalica164_996_rc REXdb_ID2342 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Sitalica164_997 REXdb_ID7258 Ty3/gypsy_CL003 (410) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCACGCCCGGTGGGACCT (tRNA-Arg) - not tested Sitalica164_998_rc REXdb_ID2343 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAGAG (tRNA-?) - not tested Smoellendorffii91_100_rc REXdb_ID5620 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_108 REXdb_ID5690 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_109_rc REXdb_ID5654 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_110 REXdb_ID5685 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_111_rc REXdb_ID12246 Ty3/gypsy_CL050 (22) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Smoellendorffii91_112 REXdb_ID13832 Ty3/gypsy_CL048 (24) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - - - - - - - 5 TGGTATCAGAGA (tRNA-Met) - not tested Smoellendorffii91_113 REXdb_ID12061 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_115_rc REXdb_ID6708 Ty3/gypsy_CL185 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGCATTAGC (tRNA-Arg) - not tested Smoellendorffii91_116 REXdb_ID13838 Ty3/gypsy_CL048 (24) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - - - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Smoellendorffii91_118 REXdb_ID12125 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Smoellendorffii91_119 REXdb_ID5710 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_12_rc REXdb_ID12103 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_120 REXdb_ID2626 Ty1/copia_CL419 (3) Class_I::LTR::Ty1/copia::Lyco + + + + + - - - - - - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_121_rc REXdb_ID12174 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_122 REXdb_ID5644 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_124 REXdb_ID6686 Ty3/gypsy_CL146 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGACCACGGTGGGAT (tRNA-Arg) - not tested Smoellendorffii91_125_rc REXdb_ID5715 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_126_rc REXdb_ID12161 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_128_rc REXdb_ID11260 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTGG not tested Smoellendorffii91_129_rc REXdb_ID11268 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_13_rc REXdb_ID12113 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_136 REXdb_ID11305 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTGG not tested Smoellendorffii91_138_rc REXdb_ID11311 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_14_rc REXdb_ID11273 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_140_rc REXdb_ID5716 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_141 REXdb_ID12088 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_147 REXdb_ID5658 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_148 REXdb_ID5659 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_15_rc REXdb_ID5639 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_157_rc REXdb_ID11298 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Smoellendorffii91_158 REXdb_ID5717 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_159_rc REXdb_ID11290 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Smoellendorffii91_160 REXdb_ID5712 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy - + + + + - - - - - not tested not tested 4 TGGTGGAGGTGAGG (tRNA-Ala) - not tested Smoellendorffii91_162_rc REXdb_ID5667 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_163 REXdb_ID12259 Ty3/gypsy_CL050 (22) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Smoellendorffii91_165_rc REXdb_ID5677 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_167_rc REXdb_ID2627 Ty1/copia_CL176 (6) Class_I::LTR::Ty1/copia::Lyco + + + + + - - - - - - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Smoellendorffii91_168 REXdb_ID5621 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_169_rc REXdb_ID5680 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_170 REXdb_ID12117 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_171 REXdb_ID12091 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_174 REXdb_ID5698 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_178 REXdb_ID11282 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_179_rc REXdb_ID6782 Ty3/gypsy_CL186 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatI + + + + + + - - - - - - 4 TGGTGAACCCGGCGTGAA (tRNA-Trp) - not tested Smoellendorffii91_18_rc REXdb_ID5650 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_180 REXdb_ID12178 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_181_rc REXdb_ID11267 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_183_rc REXdb_ID6712 Ty3/gypsy_CL187 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGCACTGCCCGGGAAA (tRNA-Gly) - not tested Smoellendorffii91_192_rc REXdb_ID12104 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_196_rc REXdb_ID11280 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_200_rc REXdb_ID5706 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_201_rc REXdb_ID12185 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Smoellendorffii91_203_rc REXdb_ID5640 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGAGATGAGGG (tRNA-?) - not tested Smoellendorffii91_206 REXdb_ID11269 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_210 REXdb_ID12132 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_216_rc REXdb_ID5671 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAAGGG (tRNA-Ala) - not tested Smoellendorffii91_22 REXdb_ID11308 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_223_rc REXdb_ID12094 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_225 REXdb_ID11300 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTGG not tested Smoellendorffii91_227_rc REXdb_ID5645 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_230 REXdb_ID11309 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_232 REXdb_ID5623 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_233_rc REXdb_ID6742 Ty3/gypsy_CL246 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGACCACGGTGGGA (tRNA-Arg) - not tested Smoellendorffii91_236_rc REXdb_ID12140 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAAC (tRNA-?) - not tested Smoellendorffii91_238 REXdb_ID2628 Ty1/copia_CL176 (6) Class_I::LTR::Ty1/copia::Lyco + + + + + - - - - - - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Smoellendorffii91_239_rc REXdb_ID12071 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_240_rc REXdb_ID12078 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_245 REXdb_ID5699 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_246_rc REXdb_ID12175 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Smoellendorffii91_248 REXdb_ID12146 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_25 REXdb_ID12141 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_251 REXdb_ID11263 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_253 REXdb_ID12152 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_254_rc REXdb_ID12126 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_256_rc REXdb_ID12084 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_258_rc REXdb_ID12155 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_260 REXdb_ID5722 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGAGG (tRNA-Glu) - not tested Smoellendorffii91_262 REXdb_ID5662 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTAGAGATGAGG (tRNA-Trp) - not tested Smoellendorffii91_263_rc REXdb_ID5624 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_265_rc REXdb_ID12072 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_266_rc REXdb_ID12085 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_268 REXdb_ID12168 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_270 REXdb_ID11297 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGT not tested Smoellendorffii91_272 REXdb_ID12095 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_274_rc REXdb_ID11302 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - - - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_275_rc REXdb_ID5672 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAAGTGAGGG (tRNA-Val) - not tested Smoellendorffii91_278 REXdb_ID12266 Ty3/gypsy_CL050 (22) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Smoellendorffii91_283_rc REXdb_ID12096 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_284 REXdb_ID5695 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGAGTTGAAGG (tRNA-?) - not tested Smoellendorffii91_285 REXdb_ID12076 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_286_rc REXdb_ID2629 Ty1/copia_CL176 (6) Class_I::LTR::Ty1/copia::Lyco + + + + + - - - - - - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Smoellendorffii91_287 REXdb_ID5637 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 6 TGGTGGAGATGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_288 REXdb_ID5646 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy - + + + + - - - - - not tested not tested 4 TGGTGGAGATGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_289_rc REXdb_ID5668 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_29_rc REXdb_ID5688 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGGAG (tRNA-Ala) - not tested Smoellendorffii91_290 REXdb_ID5663 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGTTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_292_rc REXdb_ID5629 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_293 REXdb_ID5630 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGTTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_295_rc REXdb_ID13841 Ty3/gypsy_CL048 (24) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - - - - - - - 5 TGGTATCAGAGA (tRNA-Met) - not tested Smoellendorffii91_299_rc REXdb_ID12142 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_302_rc REXdb_ID5724 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_303 REXdb_ID5641 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGTTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_305_rc REXdb_ID5720 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_306 REXdb_ID5713 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_307_rc REXdb_ID6716 Ty3/gypsy_CL188 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGCACTGCCCGGGAA (tRNA-Gly) - not tested Smoellendorffii91_308_rc REXdb_ID12097 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_31 REXdb_ID12127 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_312_rc REXdb_ID6785 Ty3/gypsy_CL186 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatI + + + + + + - - - - - - 4 TGGTGAACCTAG (tRNA-His) - not tested Smoellendorffii91_315_rc REXdb_ID5627 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGGGGTA (tRNA-Ala) - not tested Smoellendorffii91_316_rc REXdb_ID5651 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGTTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_317_rc REXdb_ID5704 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGTTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_319 REXdb_ID12258 Ty3/gypsy_CL050 (22) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Smoellendorffii91_32 REXdb_ID11299 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - + - - 5 - - not tested Smoellendorffii91_320 REXdb_ID11294 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGT not tested Smoellendorffii91_321 REXdb_ID12252 Ty3/gypsy_CL050 (22) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAGAGA (tRNA-Met) - not tested Smoellendorffii91_326_rc REXdb_ID11295 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_328 REXdb_ID12133 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Smoellendorffii91_329_rc REXdb_ID13840 Ty3/gypsy_CL048 (24) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Smoellendorffii91_331_rc REXdb_ID12098 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_333_rc REXdb_ID12163 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_334_rc REXdb_ID11265 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Smoellendorffii91_338 REXdb_ID5642 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_342 REXdb_ID12156 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_343_rc REXdb_ID12114 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_344_rc REXdb_ID11285 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATT not tested Smoellendorffii91_345_rc REXdb_ID13844 Ty3/gypsy_CL048 (24) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - - - - - - - 5 TGGTATCAGAGA (tRNA-Met) - not tested Smoellendorffii91_347_rc REXdb_ID2630 Ty1/copia_CL419 (3) Class_I::LTR::Ty1/copia::Lyco + + + + + - - - - - - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Smoellendorffii91_349 REXdb_ID12182 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_35_rc REXdb_ID12267 Ty3/gypsy_CL050 (22) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Smoellendorffii91_353 REXdb_ID5643 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_354_rc REXdb_ID13851 Ty3/gypsy_CL048 (24) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - - - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Smoellendorffii91_355 REXdb_ID12262 Ty3/gypsy_CL050 (22) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAGAGGGA (tRNA-Met) - not tested Smoellendorffii91_357 REXdb_ID5664 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_359_rc REXdb_ID12099 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_36 REXdb_ID12264 Ty3/gypsy_CL050 (22) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Smoellendorffii91_362 REXdb_ID12062 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_370 REXdb_ID6719 Ty3/gypsy_CL188 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGCACTGCCCGGGAA (tRNA-Gly) - not tested Smoellendorffii91_372 REXdb_ID12068 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_373_rc REXdb_ID5691 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGTTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_374_rc REXdb_ID13880 Ty3/gypsy_CL347 (2) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - + - - - - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Smoellendorffii91_375 REXdb_ID12263 Ty3/gypsy_CL050 (22) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAGAGAGA (tRNA-Met) - not tested Smoellendorffii91_376_rc REXdb_ID12092 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_378_rc REXdb_ID13837 Ty3/gypsy_CL048 (24) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - - - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Smoellendorffii91_38 REXdb_ID5628 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_383_rc REXdb_ID12147 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_385_rc REXdb_ID6690 Ty3/gypsy_CL146 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - + - 5 TGGCGACCACGGC (tRNA-Arg) - not tested Smoellendorffii91_387_rc REXdb_ID11292 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_388_rc REXdb_ID12169 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_39_rc REXdb_ID12261 Ty3/gypsy_CL050 (22) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAGAGA (tRNA-Met) - not tested Smoellendorffii91_390 REXdb_ID5647 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGAGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_392_rc REXdb_ID12069 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_394 REXdb_ID13833 Ty3/gypsy_CL048 (24) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - - - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Smoellendorffii91_397 REXdb_ID12158 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_398_rc REXdb_ID12079 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_399 REXdb_ID11303 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTGG not tested Smoellendorffii91_403 REXdb_ID5683 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 6 TGGTGGAGTTGAGGGGCATC (tRNA-Ala) - not tested Smoellendorffii91_404 REXdb_ID2631 Ty1/copia_CL606 (2) Class_I::LTR::Ty1/copia::Lyco + + + + + - - - - - - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Smoellendorffii91_407 REXdb_ID12080 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_409 REXdb_ID12105 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_410 REXdb_ID5727 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGTTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_411_rc REXdb_ID5696 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAAGGG (tRNA-Ala) - not tested Smoellendorffii91_412 REXdb_ID13845 Ty3/gypsy_CL048 (24) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - - - - - - - 5 TGGTATCAGAGA (tRNA-Met) - not tested Smoellendorffii91_413 REXdb_ID12081 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_414_rc REXdb_ID12100 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_416_rc REXdb_ID12143 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_417_rc REXdb_ID11310 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Smoellendorffii91_418_rc REXdb_ID6709 Ty3/gypsy_CL185 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGCATTAGCC (tRNA-Arg) - not tested Smoellendorffii91_420_rc REXdb_ID5707 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGAGGTGAGGG (tRNA-?) - not tested Smoellendorffii91_422 REXdb_ID12150 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_423_rc REXdb_ID12106 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Smoellendorffii91_429_rc REXdb_ID5697 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_43_rc REXdb_ID12260 Ty3/gypsy_CL050 (22) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - - - - - - - 5 TGGTATCAGAGGGA (tRNA-Met) - not tested Smoellendorffii91_432 REXdb_ID5700 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGTTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_433_rc REXdb_ID5648 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 6 TGGTGGAGATGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_435 REXdb_ID2632 Ty1/copia_CL176 (6) Class_I::LTR::Ty1/copia::Lyco + + + + + - - - - - - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Smoellendorffii91_440 REXdb_ID5681 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGTTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_441 REXdb_ID12249 Ty3/gypsy_CL050 (22) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Smoellendorffii91_444 REXdb_ID6713 Ty3/gypsy_CL187 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGCACTGTC (tRNA-?) - not tested Smoellendorffii91_447 REXdb_ID12107 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_45_rc REXdb_ID5678 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_451_rc REXdb_ID11304 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_455 REXdb_ID5728 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAAGGG (tRNA-Ala) - not tested Smoellendorffii91_456_rc REXdb_ID12121 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_459 REXdb_ID12181 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_462 REXdb_ID11264 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_463 REXdb_ID5673 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_466_rc REXdb_ID11274 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_469_rc REXdb_ID5655 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_470 REXdb_ID11278 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_477 REXdb_ID6691 Ty3/gypsy_CL146 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 TGGCGACCACGGC (tRNA-Arg) - not tested Smoellendorffii91_478 REXdb_ID12170 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_48_rc REXdb_ID6688 Ty3/gypsy_CL146 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGACCACAGTGGGAT (tRNA-Arg) - not tested Smoellendorffii91_481 REXdb_ID12183 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_482_rc REXdb_ID5660 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGAGGTGAGGG (tRNA-?) - not tested Smoellendorffii91_484 REXdb_ID11277 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Smoellendorffii91_486_rc REXdb_ID12073 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_488_rc REXdb_ID12128 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_489 REXdb_ID5689 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGAGTTGAAGG (tRNA-?) - not tested Smoellendorffii91_490_rc REXdb_ID2633 Ty1/copia_CL176 (6) Class_I::LTR::Ty1/copia::Lyco + + + + + - - - - - - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Smoellendorffii91_493_rc REXdb_ID6714 Ty3/gypsy_CL187 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGCACTGCCCGGGAA (tRNA-Gly) - not tested Smoellendorffii91_494_rc REXdb_ID5729 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy - + + + + - - - - - not tested not tested 4 TGGTGGAGGTGAGGGGCAT (tRNA-Ala) - not tested Smoellendorffii91_497 REXdb_ID5721 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTAGAGGTGA (tRNA-?) - not tested Smoellendorffii91_50_rc REXdb_ID12167 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_511 REXdb_ID13835 Ty3/gypsy_CL048 (24) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - - - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Smoellendorffii91_512 REXdb_ID12162 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 - - not tested Smoellendorffii91_517_rc REXdb_ID12171 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_519 REXdb_ID13839 Ty3/gypsy_CL048 (24) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - - - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Smoellendorffii91_520 REXdb_ID5726 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_522 REXdb_ID12184 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGAAGC (tRNA-?) - not tested Smoellendorffii91_524_rc REXdb_ID11270 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_528_rc REXdb_ID12101 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_529 REXdb_ID11301 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_530 REXdb_ID5675 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_536 REXdb_ID12250 Ty3/gypsy_CL050 (22) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Smoellendorffii91_538 REXdb_ID12179 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_54 REXdb_ID11261 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_540_rc REXdb_ID2634 Ty1/copia_CL606 (2) Class_I::LTR::Ty1/copia::Lyco + + + + + - - - - - - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Smoellendorffii91_542 REXdb_ID5692 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_546_rc REXdb_ID5656 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_548 REXdb_ID12253 Ty3/gypsy_CL050 (22) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAAAGG (tRNA-Met) - not tested Smoellendorffii91_549_rc REXdb_ID5732 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_551_rc REXdb_ID6715 Ty3/gypsy_CL187 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGCACTGCCCGGGAAA (tRNA-Gly) - not tested Smoellendorffii91_553_rc REXdb_ID6711 Ty3/gypsy_CL185 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGCGTTAGCCGGGAG (tRNA-Gly) - not tested Smoellendorffii91_557_rc REXdb_ID11284 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_558_rc REXdb_ID5703 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGTTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_565_rc REXdb_ID5719 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_567 REXdb_ID12070 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_568_rc REXdb_ID11287 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_569_rc REXdb_ID12086 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_571 REXdb_ID5625 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_576_rc REXdb_ID12074 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_58_rc REXdb_ID12321 Ty3/gypsy_CL694 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Smoellendorffii91_580_rc REXdb_ID5684 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCATC (tRNA-Ala) - not tested Smoellendorffii91_581_rc REXdb_ID12063 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_582_rc REXdb_ID5714 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_583 REXdb_ID5711 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGAGTTGAAGG (tRNA-?) - not tested Smoellendorffii91_585 REXdb_ID5687 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGAAGAGGGG (tRNA-Ala) - not tested Smoellendorffii91_587 REXdb_ID13852 Ty3/gypsy_CL048 (24) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Smoellendorffii91_591 REXdb_ID5682 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_595 REXdb_ID5636 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_597 REXdb_ID12177 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Smoellendorffii91_598_rc REXdb_ID2635 Ty1/copia_CL419 (3) Class_I::LTR::Ty1/copia::Lyco + + + + + - - - - - - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Smoellendorffii91_6_rc REXdb_ID13855 Ty3/gypsy_CL048 (24) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - - - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Smoellendorffii91_60_rc REXdb_ID6743 Ty3/gypsy_CL246 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila - + + + + - - - + - not tested not tested 4 TGGCGACCACGGTGGGAT (tRNA-Arg) - not tested Smoellendorffii91_604 REXdb_ID5652 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGTTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_606_rc REXdb_ID12255 Ty3/gypsy_CL050 (22) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Smoellendorffii91_607 REXdb_ID5731 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_61_rc REXdb_ID5661 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_611 REXdb_ID5723 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_615_rc REXdb_ID13843 Ty3/gypsy_CL048 (24) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - - - - - - - 5 TGGTATCAAAGG (tRNA-Met) - not tested Smoellendorffii91_616_rc REXdb_ID11289 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_617_rc REXdb_ID12248 Ty3/gypsy_CL050 (22) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 - - not tested Smoellendorffii91_618_rc REXdb_ID6689 Ty3/gypsy_CL146 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - + - 5 TGGCAACCACGG (tRNA-?) - not tested Smoellendorffii91_619_rc REXdb_ID12134 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_620 REXdb_ID5733 Ty3/gypsy_CL695 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_621 REXdb_ID12144 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_625 REXdb_ID5649 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGGGGCATC (tRNA-Ala) - not tested Smoellendorffii91_626_rc REXdb_ID12165 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_629_rc REXdb_ID13881 Ty3/gypsy_CL347 (2) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - + - - - - - 5 TGGTATTGGAGC (tRNA-Met) - not tested Smoellendorffii91_632_rc REXdb_ID11266 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_633 REXdb_ID12176 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_636 REXdb_ID11306 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_640 REXdb_ID12173 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_641_rc REXdb_ID13842 Ty3/gypsy_CL048 (24) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - - - - - - - 5 TGGTATCAGAGA (tRNA-Met) - not tested Smoellendorffii91_643_rc REXdb_ID13854 Ty3/gypsy_CL048 (24) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - - - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Smoellendorffii91_651 REXdb_ID12067 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_652_rc REXdb_ID13836 Ty3/gypsy_CL048 (24) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - - - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Smoellendorffii91_653_rc REXdb_ID12247 Ty3/gypsy_CL050 (22) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAGAGA (tRNA-Met) - not tested Smoellendorffii91_654_rc REXdb_ID5705 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_655_rc REXdb_ID12108 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_656 REXdb_ID12145 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_658_rc REXdb_ID5701 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_664_rc REXdb_ID12075 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_665 REXdb_ID11288 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Smoellendorffii91_667 REXdb_ID12082 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_668_rc REXdb_ID12129 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_67 REXdb_ID11275 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_670 REXdb_ID5634 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_671 REXdb_ID5657 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_673_rc REXdb_ID5709 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGTTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_674 REXdb_ID5676 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_676 REXdb_ID12164 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_680_rc REXdb_ID12257 Ty3/gypsy_CL050 (22) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 - - not tested Smoellendorffii91_683 REXdb_ID12109 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_684 REXdb_ID13850 Ty3/gypsy_CL048 (24) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass - + + + + - - - - - not tested not tested 5 TGGTATCAGAGACA (tRNA-Met) - not tested Smoellendorffii91_686 REXdb_ID6744 Ty3/gypsy_CL246 (3) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGACCACGGTGGGAT (tRNA-Arg) - not tested Smoellendorffii91_687 REXdb_ID5718 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_688_rc REXdb_ID5674 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 6 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_689 REXdb_ID6718 Ty3/gypsy_CL188 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGCACTGCCCGGGAA (tRNA-Gly) - not tested Smoellendorffii91_69 REXdb_ID12122 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_690 REXdb_ID5653 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_692 REXdb_ID12256 Ty3/gypsy_CL050 (22) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAGAGA (tRNA-Met) - not tested Smoellendorffii91_695 REXdb_ID12130 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_7_rc REXdb_ID5670 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGTTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_703_rc REXdb_ID12166 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_705 REXdb_ID12087 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_706_rc REXdb_ID5626 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_711 REXdb_ID12089 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_713 REXdb_ID12083 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_714_rc REXdb_ID12135 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - - - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_723_rc REXdb_ID6717 Ty3/gypsy_CL188 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGCACTGCCCGGGAA (tRNA-Gly) - not tested Smoellendorffii91_724_rc REXdb_ID11307 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Smoellendorffii91_726 REXdb_ID13846 Ty3/gypsy_CL048 (24) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass - + + + + - - - - - not tested not tested 6 - - not tested Smoellendorffii91_727 REXdb_ID13848 Ty3/gypsy_CL048 (24) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - - - - - - - 6 TGGTATCAGAGA (tRNA-Met) - not tested Smoellendorffii91_730_rc REXdb_ID11312 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Smoellendorffii91_732_rc REXdb_ID13849 Ty3/gypsy_CL048 (24) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - - - - - - - 5 TGGTATCGGAGG (tRNA-?) - not tested Smoellendorffii91_733_rc REXdb_ID12159 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_736_rc REXdb_ID6769 Ty3/gypsy_CL696 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGCGTCAGCCGGGAG (tRNA-Gly) - not tested Smoellendorffii91_737 REXdb_ID5708 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_738_rc REXdb_ID12251 Ty3/gypsy_CL050 (22) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAGAGGGA (tRNA-Met) - not tested Smoellendorffii91_739_rc REXdb_ID12136 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_74 REXdb_ID6710 Ty3/gypsy_CL185 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGTGCGTTAGT (tRNA-?) - not tested Smoellendorffii91_743 REXdb_ID13847 Ty3/gypsy_CL048 (24) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Smoellendorffii91_745_rc REXdb_ID11296 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_747_rc REXdb_ID12154 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_750_rc REXdb_ID12093 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_753 REXdb_ID12110 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_754 REXdb_ID12149 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_762_rc REXdb_ID12118 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 4 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_763 REXdb_ID12111 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_765 REXdb_ID5665 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_768 REXdb_ID11286 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_771 REXdb_ID12172 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Smoellendorffii91_772_rc REXdb_ID13834 Ty3/gypsy_CL048 (24) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - - - - - - - 5 TGGTATCAGAGGCA (tRNA-Met) - not tested Smoellendorffii91_773 REXdb_ID6687 Ty3/gypsy_CL146 (6) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - + - 5 TGGCGACCACGGTGGGAT (tRNA-Arg) - not tested Smoellendorffii91_775 REXdb_ID11281 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_777 REXdb_ID5632 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAAGGG (tRNA-Ala) - not tested Smoellendorffii91_778 REXdb_ID5702 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_780_rc REXdb_ID5686 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_781 REXdb_ID5666 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGTTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_784 REXdb_ID6784 Ty3/gypsy_CL186 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatI + + + + + + - - - - - - 4 TGGTGAACCCGGCGTGAC (tRNA-Trp) - not tested Smoellendorffii91_785 REXdb_ID12157 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_786 REXdb_ID11276 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_787_rc REXdb_ID11279 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_788_rc REXdb_ID11271 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_793_rc REXdb_ID5693 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_794 REXdb_ID12115 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_796_rc REXdb_ID12077 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_8_rc REXdb_ID5622 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_80 REXdb_ID12153 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_805 REXdb_ID12090 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_806_rc REXdb_ID12123 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_809 REXdb_ID11291 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_815_rc REXdb_ID5679 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_819_rc REXdb_ID11272 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_827_rc REXdb_ID12112 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_834_rc REXdb_ID12254 Ty3/gypsy_CL050 (22) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Smoellendorffii91_837_rc REXdb_ID5725 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAAGTGAGGG (tRNA-Val) - not tested Smoellendorffii91_841_rc REXdb_ID6783 Ty3/gypsy_CL186 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::TatI + + + + + + - - - - - - 4 TGGTGAACCCGGCGTGAC (tRNA-Trp) - not tested Smoellendorffii91_842 REXdb_ID12124 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_843_rc REXdb_ID12064 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_844 REXdb_ID12065 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_845_rc REXdb_ID5730 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGTTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_852_rc REXdb_ID12131 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAAC (tRNA-?) - not tested Smoellendorffii91_853 REXdb_ID5635 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_854_rc REXdb_ID5694 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGATGAAGGG (tRNA-Ala) - not tested Smoellendorffii91_855 REXdb_ID5669 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_856_rc REXdb_ID2636 Ty1/copia_CL176 (6) Class_I::LTR::Ty1/copia::Lyco + + + + + - - - - - - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Smoellendorffii91_859 REXdb_ID5631 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_863_rc REXdb_ID5633 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAGGGGCA (tRNA-Ala) - not tested Smoellendorffii91_867_rc REXdb_ID12066 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_868 REXdb_ID12265 Ty3/gypsy_CL050 (22) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 5 - - not tested Smoellendorffii91_87 REXdb_ID12151 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_871 REXdb_ID11283 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTGG not tested Smoellendorffii91_873 REXdb_ID12180 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - - - not tested not tested - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Smoellendorffii91_875_rc REXdb_ID12119 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_877_rc REXdb_ID12137 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_878 REXdb_ID12148 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATTGGAGCC (tRNA-Met) - not tested Smoellendorffii91_879_rc REXdb_ID12120 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGC (tRNA-Met) - not tested Smoellendorffii91_880 REXdb_ID12116 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_882 REXdb_ID11293 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - - not tested Smoellendorffii91_9_rc REXdb_ID13853 Ty3/gypsy_CL048 (24) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - - - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Smoellendorffii91_90 REXdb_ID12138 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_91 REXdb_ID12139 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_92 REXdb_ID5638 Ty3/gypsy_CL017 (113) Class_I::LTR::Ty3/gypsy::non-chromovirus::Selgy + + + + + - - - - - - - 4 TGGTGGAGGTGAT (tRNA-Ala) - not tested Smoellendorffii91_93 REXdb_ID11262 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested Smoellendorffii91_94_rc REXdb_ID12160 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_96 REXdb_ID12102 Ty3/gypsy_CL016 (125) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - not tested not tested - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Smoellendorffii91_98_rc REXdb_ID11313 Ty3/gypsy_CL029 (54) Class_I::LTR::Ty3/gypsy::chromovirus::Tcn1 + + + + + - + - - - - - 5 - TTGATTCAGATTGTG not tested SorB1_ID109 REXdb_ID12046 Ty3/gypsy_CL007 (188) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested Spolyrhiza290_11_rc REXdb_ID11983 Ty3/gypsy_CL697 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCCTAGT (tRNA-Met) - not tested Spolyrhiza290_12 REXdb_ID13761 Ty3/gypsy_CL698 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTTCCACCTC (tRNA-Asn) - not tested Spolyrhiza290_14_rc REXdb_ID5318 Ty1/copia_CL301 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 4 TGGTATCAGAGCCT (tRNA-Met) - not tested Spolyrhiza290_2_rc REXdb_ID13763 Ty3/gypsy_CL701 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAGA (tRNA-Met) - not tested Spolyrhiza290_20 REXdb_ID3604 Ty1/copia_CL302 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATTAGAGCG (tRNA-Met) - not tested Spolyrhiza290_21_rc REXdb_ID11984 Ty3/gypsy_CL699 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Spolyrhiza290_24_rc REXdb_ID3605 Ty1/copia_CL607 (2) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Spolyrhiza290_27_rc REXdb_ID3606 Ty1/copia_CL607 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Spolyrhiza290_28 REXdb_ID5319 Ty1/copia_CL301 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spolyrhiza290_29 REXdb_ID13762 Ty3/gypsy_CL700 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTGAGAGC (tRNA-Thr) - not tested Spolyrhiza290_3 REXdb_ID13562 Ty3/gypsy_CL348 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAGA (tRNA-Met) - not tested Spolyrhiza290_30 REXdb_ID5320 Ty1/copia_CL608 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATTAGAGCT (tRNA-Met) - not tested Spolyrhiza290_35_rc REXdb_ID5321 Ty1/copia_CL301 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spolyrhiza290_37_rc REXdb_ID12322 Ty3/gypsy_CL702 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 6 - - not tested Spolyrhiza290_42 REXdb_ID5322 Ty1/copia_CL608 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 - - not tested Spolyrhiza290_43_rc REXdb_ID3607 Ty1/copia_CL609 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCAAGGAACA (tRNA-Val) - not tested Spolyrhiza290_44 REXdb_ID5323 Ty1/copia_CL301 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spolyrhiza290_5 REXdb_ID3608 Ty1/copia_CL302 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGT (tRNA-Met) - not tested Spolyrhiza290_58_rc REXdb_ID13563 Ty3/gypsy_CL348 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAGAT (tRNA-Met) - not tested Spolyrhiza290_59_rc REXdb_ID3609 Ty1/copia_CL302 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Spolyrhiza290_60 REXdb_ID3610 Ty1/copia_CL609 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGCAAGGAACA (tRNA-Val) - not tested Spolyrhiza290_61 REXdb_ID3611 Ty1/copia_CL302 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Spurpurea289_10 REXdb_ID13171 Ty3/gypsy_CL067 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Spurpurea289_100 REXdb_ID958 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTGCAGGTTA (tRNA-?) - not tested Spurpurea289_1003_rc REXdb_ID959 Ty1/copia_CL091 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_1006 REXdb_ID3612 Ty1/copia_CL610 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_101_rc REXdb_ID961 Ty1/copia_CL303 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_1010 REXdb_ID3613 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_1013_rc REXdb_ID3614 Ty1/copia_CL224 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_1014 REXdb_ID3615 Ty1/copia_CL225 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_1015 REXdb_ID960 Ty1/copia_CL143 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_1016_rc REXdb_ID3616 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_102 REXdb_ID13252 Ty3/gypsy_CL118 (8) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCTGG (tRNA-Met) - not tested Spurpurea289_1020 REXdb_ID3617 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_1021 REXdb_ID13238 Ty3/gypsy_CL097 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_1022 REXdb_ID962 Ty1/copia_CL226 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Spurpurea289_1023_rc REXdb_ID11897 Ty3/gypsy_CL143 (6) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Spurpurea289_1025_rc REXdb_ID1812 Ty1/copia_CL053 (17) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTTA (tRNA-Met) - not tested Spurpurea289_1029_rc REXdb_ID3618 Ty1/copia_CL420 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Spurpurea289_103_rc REXdb_ID966 Ty1/copia_CL303 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_1031_rc REXdb_ID3619 Ty1/copia_CL611 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_1032_rc REXdb_ID963 Ty1/copia_CL051 (18) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_1034_rc REXdb_ID964 Ty1/copia_CL421 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_1037 REXdb_ID3620 Ty1/copia_CL144 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_1038_rc REXdb_ID965 Ty1/copia_CL066 (14) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_1040_rc REXdb_ID13300 Ty3/gypsy_CL129 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Spurpurea289_1043_rc REXdb_ID7560 Ty3/gypsy_CL078 (13) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 - - not tested Spurpurea289_1044_rc REXdb_ID3621 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Spurpurea289_1046_rc REXdb_ID3622 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Spurpurea289_1047_rc REXdb_ID3623 Ty1/copia_CL227 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGAATCAAACAA (tRNA-Arg) - not tested Spurpurea289_105 REXdb_ID3624 Ty1/copia_CL052 (18) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_1050_rc REXdb_ID11919 Ty3/gypsy_CL189 (4) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCAAGG (tRNA-Met) - not tested Spurpurea289_1052 REXdb_ID967 Ty1/copia_CL612 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGGTTTT (tRNA-Met) - not tested Spurpurea289_1057 REXdb_ID968 Ty1/copia_CL613 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 - - not tested Spurpurea289_1058_rc REXdb_ID969 Ty1/copia_CL143 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_1063 REXdb_ID3625 Ty1/copia_CL614 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Spurpurea289_1064_rc REXdb_ID13764 Ty3/gypsy_CL703 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_1067 REXdb_ID13438 Ty3/gypsy_CL242 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATTAGAGCCT (tRNA-Met) - not tested Spurpurea289_1068 REXdb_ID3626 Ty1/copia_CL228 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_1069_rc REXdb_ID3627 Ty1/copia_CL052 (18) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_1074 REXdb_ID970 Ty1/copia_CL045 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_1079_rc REXdb_ID13448 Ty3/gypsy_CL247 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAGA (tRNA-Met) - not tested Spurpurea289_1082 REXdb_ID971 Ty1/copia_CL093 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Spurpurea289_1084_rc REXdb_ID3628 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_1085 REXdb_ID13178 Ty3/gypsy_CL067 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGTCT (tRNA-Met) - not tested Spurpurea289_1090 REXdb_ID11920 Ty3/gypsy_CL189 (4) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCAAGG (tRNA-Met) - not tested Spurpurea289_1091_rc REXdb_ID972 Ty1/copia_CL615 (2) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 4 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Spurpurea289_1093_rc REXdb_ID13256 Ty3/gypsy_CL118 (8) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_1095_rc REXdb_ID3629 Ty1/copia_CL422 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATTAGAGCAA (tRNA-Met) - not tested Spurpurea289_1097_rc REXdb_ID973 Ty1/copia_CL058 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_1098 REXdb_ID974 Ty1/copia_CL304 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_1099 REXdb_ID975 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_110 REXdb_ID976 Ty1/copia_CL305 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_1100 REXdb_ID3630 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_1101_rc REXdb_ID977 Ty1/copia_CL304 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_1102 REXdb_ID978 Ty1/copia_CL121 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Spurpurea289_1103_rc REXdb_ID3631 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_1104_rc REXdb_ID979 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_1105_rc REXdb_ID980 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Spurpurea289_1106_rc REXdb_ID981 Ty1/copia_CL229 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_1108 REXdb_ID982 Ty1/copia_CL229 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_116_rc REXdb_ID3632 Ty1/copia_CL052 (18) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Spurpurea289_117 REXdb_ID983 Ty1/copia_CL306 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_118 REXdb_ID984 Ty1/copia_CL173 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Spurpurea289_119 REXdb_ID3633 Ty1/copia_CL616 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Spurpurea289_12 REXdb_ID985 Ty1/copia_CL074 (12) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 4 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_120 REXdb_ID3634 Ty1/copia_CL227 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Spurpurea289_123 REXdb_ID986 Ty1/copia_CL066 (14) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_124_rc REXdb_ID3635 Ty1/copia_CL145 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Spurpurea289_125 REXdb_ID3636 Ty1/copia_CL307 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_126 REXdb_ID3637 Ty1/copia_CL122 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_128 REXdb_ID13248 Ty3/gypsy_CL098 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATTAGAGCG (tRNA-Met) - not tested Spurpurea289_129 REXdb_ID3638 Ty1/copia_CL144 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_13_rc REXdb_ID3641 Ty1/copia_CL105 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_132_rc REXdb_ID3639 Ty1/copia_CL228 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Spurpurea289_133 REXdb_ID13765 Ty3/gypsy_CL704 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_134_rc REXdb_ID3640 Ty1/copia_CL617 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_138 REXdb_ID11852 Ty3/gypsy_CL104 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGCGAATCCAC (tRNA-Arg) - not tested Spurpurea289_141 REXdb_ID3642 Ty1/copia_CL145 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAGG (tRNA-Met) - not tested Spurpurea289_144 REXdb_ID987 Ty1/copia_CL214 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 - - not tested Spurpurea289_145 REXdb_ID3643 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_146_rc REXdb_ID988 Ty1/copia_CL308 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGGTTTCGAT (tRNA-Met) - not tested Spurpurea289_147 REXdb_ID3644 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Spurpurea289_148 REXdb_ID13257 Ty3/gypsy_CL118 (8) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_149 REXdb_ID3645 Ty1/copia_CL228 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_15_rc REXdb_ID992 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Spurpurea289_151 REXdb_ID989 Ty1/copia_CL177 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_153_rc REXdb_ID3646 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Spurpurea289_154_rc REXdb_ID990 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_158_rc REXdb_ID991 Ty1/copia_CL074 (12) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGT (tRNA-Met) - not tested Spurpurea289_159_rc REXdb_ID3647 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_16_rc REXdb_ID3651 Ty1/copia_CL105 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_160_rc REXdb_ID13174 Ty3/gypsy_CL067 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Spurpurea289_161 REXdb_ID993 Ty1/copia_CL092 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_162_rc REXdb_ID3648 Ty1/copia_CL420 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_165_rc REXdb_ID13234 Ty3/gypsy_CL097 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATTAGAGCT (tRNA-Met) - not tested Spurpurea289_166 REXdb_ID994 Ty1/copia_CL051 (18) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCAAG (tRNA-Met) - not tested Spurpurea289_167_rc REXdb_ID995 Ty1/copia_CL177 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Spurpurea289_168 REXdb_ID3649 Ty1/copia_CL225 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_169_rc REXdb_ID3650 Ty1/copia_CL388 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_170 REXdb_ID11856 Ty3/gypsy_CL104 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Spurpurea289_171_rc REXdb_ID11951 Ty3/gypsy_CL349 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_174 REXdb_ID13244 Ty3/gypsy_CL098 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCGGAGGGAA (tRNA-Ser) - not tested Spurpurea289_175_rc REXdb_ID3653 Ty1/copia_CL052 (18) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 - - not tested Spurpurea289_176_rc REXdb_ID3654 Ty1/copia_CL145 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Spurpurea289_177_rc REXdb_ID3655 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_18 REXdb_ID3656 Ty1/copia_CL174 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_180_rc REXdb_ID5324 Ty1/copia_CL221 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_183 REXdb_ID996 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_184_rc REXdb_ID997 Ty1/copia_CL121 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_186 REXdb_ID998 Ty1/copia_CL066 (14) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_190 REXdb_ID13278 Ty3/gypsy_CL119 (8) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Spurpurea289_194_rc REXdb_ID13246 Ty3/gypsy_CL098 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCGGAGGGAA (tRNA-Ser) - not tested Spurpurea289_195 REXdb_ID3657 Ty1/copia_CL423 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_196_rc REXdb_ID13184 Ty3/gypsy_CL070 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCAAGGTT (tRNA-Met) - not tested Spurpurea289_197 REXdb_ID3658 Ty1/copia_CL172 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTGTTGAAGGA (tRNA-Sup) - not tested Spurpurea289_2 REXdb_ID3659 Ty1/copia_CL703 (1) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Spurpurea289_20_rc REXdb_ID1001 Ty1/copia_CL226 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Spurpurea289_201 REXdb_ID999 Ty1/copia_CL308 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_202 REXdb_ID1000 Ty1/copia_CL230 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_203_rc REXdb_ID13766 Ty3/gypsy_CL705 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCTGGTT (tRNA-Met) - not tested Spurpurea289_207 REXdb_ID3660 Ty1/copia_CL145 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAGG (tRNA-Met) - not tested Spurpurea289_209_rc REXdb_ID2592 Ty1/copia_CL037 (24) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGATGCTCTAACCAGCT (tRNA-Ile) Spurpurea289_210 REXdb_ID1002 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGGT (tRNA-Met) - not tested Spurpurea289_212_rc REXdb_ID1003 Ty1/copia_CL618 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_213 REXdb_ID1004 Ty1/copia_CL091 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_214 REXdb_ID1005 Ty1/copia_CL619 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Spurpurea289_215 REXdb_ID13190 Ty3/gypsy_CL070 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCAAGGTT (tRNA-Met) - not tested Spurpurea289_218_rc REXdb_ID1006 Ty1/copia_CL066 (14) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGTT (tRNA-Met) - not tested Spurpurea289_22 REXdb_ID3661 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_222 REXdb_ID1007 Ty1/copia_CL143 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_227_rc REXdb_ID3662 Ty1/copia_CL620 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_229 REXdb_ID13259 Ty3/gypsy_CL118 (8) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCGGAGGGCA (tRNA-Ser) - not tested Spurpurea289_23 REXdb_ID3663 Ty1/copia_CL424 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_232_rc REXdb_ID1008 Ty1/copia_CL093 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Spurpurea289_233_rc REXdb_ID1009 Ty1/copia_CL231 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_235_rc REXdb_ID11811 Ty3/gypsy_CL087 (11) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_237 REXdb_ID1010 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_24_rc REXdb_ID1012 Ty1/copia_CL092 (10) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATAAGAGC (tRNA-Met) - not tested Spurpurea289_240 REXdb_ID13450 Ty3/gypsy_CL247 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Spurpurea289_241_rc REXdb_ID3664 Ty1/copia_CL105 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 4 - - not tested Spurpurea289_242_rc REXdb_ID1011 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAGGTT (tRNA-Met) - not tested Spurpurea289_246 REXdb_ID3665 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_249_rc REXdb_ID13249 Ty3/gypsy_CL098 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCGG (tRNA-Met) - not tested Spurpurea289_250 REXdb_ID1013 Ty1/copia_CL305 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_251_rc REXdb_ID3666 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_252_rc REXdb_ID3667 Ty1/copia_CL423 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_254 REXdb_ID3668 Ty1/copia_CL610 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_255 REXdb_ID11985 Ty3/gypsy_CL706 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Spurpurea289_256_rc REXdb_ID1014 Ty1/copia_CL304 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Spurpurea289_258 REXdb_ID1015 Ty1/copia_CL045 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGATC (tRNA-Met) - not tested Spurpurea289_259 REXdb_ID3669 Ty1/copia_CL105 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_260_rc REXdb_ID3670 Ty1/copia_CL133 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_262 REXdb_ID13250 Ty3/gypsy_CL098 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCTGAAGGGA (tRNA-Ala) - not tested Spurpurea289_263_rc REXdb_ID13251 Ty3/gypsy_CL098 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCGG (tRNA-Met) - not tested Spurpurea289_265_rc REXdb_ID1016 Ty1/copia_CL425 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_266_rc REXdb_ID3671 Ty1/copia_CL052 (18) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_267_rc REXdb_ID1017 Ty1/copia_CL309 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_268_rc REXdb_ID3672 Ty1/copia_CL220 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_27_rc REXdb_ID3675 Ty1/copia_CL574 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Spurpurea289_272 REXdb_ID3673 Ty1/copia_CL611 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_275 REXdb_ID3674 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_276_rc REXdb_ID1018 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_28 REXdb_ID3676 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_280_rc REXdb_ID3677 Ty1/copia_CL144 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Spurpurea289_281_rc REXdb_ID1019 Ty1/copia_CL074 (12) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_283_rc REXdb_ID2950 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Spurpurea289_287_rc REXdb_ID1020 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_29_rc REXdb_ID13285 Ty3/gypsy_CL119 (8) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_294 REXdb_ID11922 Ty3/gypsy_CL189 (4) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCAAGG (tRNA-Met) - not tested Spurpurea289_295 REXdb_ID3678 Ty1/copia_CL224 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_297_rc REXdb_ID1021 Ty1/copia_CL091 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Spurpurea289_3_rc REXdb_ID1046 Ty1/copia_CL173 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_300 REXdb_ID3679 Ty1/copia_CL621 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Spurpurea289_303 REXdb_ID1022 Ty1/copia_CL426 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCCT (tRNA-Met) - not tested Spurpurea289_304 REXdb_ID1023 Ty1/copia_CL275 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Spurpurea289_307_rc REXdb_ID1024 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_309_rc REXdb_ID1025 Ty1/copia_CL066 (14) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_31 REXdb_ID1026 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_312_rc REXdb_ID13767 Ty3/gypsy_CL707 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_313 REXdb_ID1027 Ty1/copia_CL231 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_316 REXdb_ID3680 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Spurpurea289_317_rc REXdb_ID3681 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Spurpurea289_318_rc REXdb_ID3682 Ty1/copia_CL422 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_321_rc REXdb_ID3683 Ty1/copia_CL622 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Spurpurea289_323 REXdb_ID3684 Ty1/copia_CL224 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_325_rc REXdb_ID13176 Ty3/gypsy_CL067 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Spurpurea289_327_rc REXdb_ID13179 Ty3/gypsy_CL067 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCATTAGAAA (tRNA-Asn) - not tested Spurpurea289_328_rc REXdb_ID1028 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_329 REXdb_ID3685 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_33_rc REXdb_ID1031 Ty1/copia_CL624 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Spurpurea289_331_rc REXdb_ID1029 Ty1/copia_CL612 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGGTTTT (tRNA-Met) - not tested Spurpurea289_333 REXdb_ID1030 Ty1/copia_CL623 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Spurpurea289_335 REXdb_ID3686 Ty1/copia_CL621 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Spurpurea289_336_rc REXdb_ID13247 Ty3/gypsy_CL098 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAGGTTCC (tRNA-Met) - not tested Spurpurea289_337_rc REXdb_ID13768 Ty3/gypsy_CL708 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAGGAT (tRNA-Met) - not tested Spurpurea289_338 REXdb_ID13173 Ty3/gypsy_CL067 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_34_rc REXdb_ID11839 Ty3/gypsy_CL090 (11) Class_I::LTR::Ty3/gypsy::chromovirus::CRM - + + + + - + - - - not tested not tested 4 - - not tested Spurpurea289_340_rc REXdb_ID1032 Ty1/copia_CL074 (12) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCGA (tRNA-Met) - not tested Spurpurea289_344_rc REXdb_ID3687 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_348_rc REXdb_ID3688 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Spurpurea289_349 REXdb_ID1033 Ty1/copia_CL074 (12) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_35_rc REXdb_ID13374 Ty3/gypsy_CL179 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Spurpurea289_353 REXdb_ID1034 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_359 REXdb_ID3689 Ty1/copia_CL620 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_362_rc REXdb_ID1035 Ty1/copia_CL066 (14) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_364_rc REXdb_ID3690 Ty1/copia_CL145 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Spurpurea289_365_rc REXdb_ID13254 Ty3/gypsy_CL118 (8) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Spurpurea289_367 REXdb_ID1036 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAGA (tRNA-Met) - not tested Spurpurea289_37 REXdb_ID3691 Ty1/copia_CL592 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Spurpurea289_370 REXdb_ID1037 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAGG (tRNA-Met) - not tested Spurpurea289_371_rc REXdb_ID13449 Ty3/gypsy_CL247 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAGA (tRNA-Met) - not tested Spurpurea289_372 REXdb_ID1038 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_373_rc REXdb_ID3692 Ty1/copia_CL424 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_374_rc REXdb_ID1039 Ty1/copia_CL217 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Spurpurea289_375_rc REXdb_ID3693 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_380 REXdb_ID1040 Ty1/copia_CL229 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_382 REXdb_ID1041 Ty1/copia_CL092 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_383_rc REXdb_ID1042 Ty1/copia_CL066 (14) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Spurpurea289_386 REXdb_ID3694 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_389_rc REXdb_ID13301 Ty3/gypsy_CL129 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Spurpurea289_390_rc REXdb_ID3695 Ty1/copia_CL616 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Spurpurea289_391_rc REXdb_ID3696 Ty1/copia_CL586 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Spurpurea289_392 REXdb_ID1043 Ty1/copia_CL310 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Spurpurea289_393 REXdb_ID1044 Ty1/copia_CL214 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_394_rc REXdb_ID1045 Ty1/copia_CL082 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_395_rc REXdb_ID3697 Ty1/copia_CL105 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_396_rc REXdb_ID3698 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_4 REXdb_ID13282 Ty3/gypsy_CL119 (8) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 4 TGGTATCAGAGCCGG (tRNA-Met) - not tested Spurpurea289_401 REXdb_ID3699 Ty1/copia_CL140 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Spurpurea289_402 REXdb_ID1047 Ty1/copia_CL303 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_405 REXdb_ID1048 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTGTCAGAGT (tRNA-Met) - not tested Spurpurea289_407 REXdb_ID1049 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTGTCAGAGT (tRNA-Met) - not tested Spurpurea289_41_rc REXdb_ID1050 Ty1/copia_CL306 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Spurpurea289_411_rc REXdb_ID13275 Ty3/gypsy_CL101 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCTGGTTAC (tRNA-Met) - not tested Spurpurea289_412 REXdb_ID2593 Ty1/copia_CL037 (24) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGATGCTCTAACCAACT (tRNA-Ile) Spurpurea289_413 REXdb_ID3700 Ty1/copia_CL174 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATTAGAGCCTA (tRNA-Met) - not tested Spurpurea289_421 REXdb_ID1051 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGGT (tRNA-Met) - not tested Spurpurea289_424 REXdb_ID3701 Ty1/copia_CL225 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_425_rc REXdb_ID11986 Ty3/gypsy_CL325 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_426_rc REXdb_ID1052 Ty1/copia_CL308 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCTAGGTTTCGAT (tRNA-Met) - not tested Spurpurea289_428_rc REXdb_ID3702 Ty1/copia_CL220 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_429 REXdb_ID1053 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Spurpurea289_430_rc REXdb_ID3703 Ty1/copia_CL307 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_433 REXdb_ID1054 Ty1/copia_CL214 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_434 REXdb_ID1055 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGGT (tRNA-Met) - not tested Spurpurea289_436_rc REXdb_ID11854 Ty3/gypsy_CL104 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_437 REXdb_ID3704 Ty1/copia_CL133 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_439_rc REXdb_ID13180 Ty3/gypsy_CL070 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Spurpurea289_44_rc REXdb_ID3706 Ty1/copia_CL174 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_440_rc REXdb_ID5325 Ty1/copia_CL221 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_444 REXdb_ID13305 Ty3/gypsy_CL129 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Spurpurea289_445 REXdb_ID3705 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Spurpurea289_446_rc REXdb_ID1056 Ty1/copia_CL421 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_448 REXdb_ID1057 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAGG (tRNA-Met) - not tested Spurpurea289_450 REXdb_ID1058 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_453_rc REXdb_ID3707 Ty1/copia_CL105 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_456_rc REXdb_ID3708 Ty1/copia_CL704 (1) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTA (tRNA-Met) - not tested Spurpurea289_457 REXdb_ID13284 Ty3/gypsy_CL119 (8) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_458_rc REXdb_ID1059 Ty1/copia_CL074 (12) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Spurpurea289_461 REXdb_ID1060 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_462 REXdb_ID1061 Ty1/copia_CL143 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGA (tRNA-Met) - not tested Spurpurea289_464_rc REXdb_ID3709 Ty1/copia_CL420 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Spurpurea289_465 REXdb_ID1062 Ty1/copia_CL421 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_467 REXdb_ID3710 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_469 REXdb_ID3711 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_471_rc REXdb_ID1063 Ty1/copia_CL584 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_472 REXdb_ID1064 Ty1/copia_CL230 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Spurpurea289_475 REXdb_ID3712 Ty1/copia_CL427 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAAGCA (tRNA-Ile) - not tested Spurpurea289_476 REXdb_ID1065 Ty1/copia_CL425 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_477 REXdb_ID13239 Ty3/gypsy_CL097 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_478_rc REXdb_ID3713 Ty1/copia_CL227 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Spurpurea289_479 REXdb_ID11842 Ty3/gypsy_CL090 (11) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_484 REXdb_ID11898 Ty3/gypsy_CL143 (6) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Spurpurea289_485_rc REXdb_ID13169 Ty3/gypsy_CL067 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Spurpurea289_486_rc REXdb_ID3714 Ty1/copia_CL145 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATTAGAGCT (tRNA-Met) - not tested Spurpurea289_489_rc REXdb_ID1066 Ty1/copia_CL074 (12) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCGA (tRNA-Met) - not tested Spurpurea289_490_rc REXdb_ID1067 Ty1/copia_CL058 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_491_rc REXdb_ID11952 Ty3/gypsy_CL349 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_494_rc REXdb_ID3715 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Spurpurea289_495_rc REXdb_ID1068 Ty1/copia_CL092 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_496 REXdb_ID1069 Ty1/copia_CL310 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_499 REXdb_ID13543 Ty3/gypsy_CL329 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCTGGTT (tRNA-Met) - not tested Spurpurea289_5 REXdb_ID13375 Ty3/gypsy_CL179 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_502_rc REXdb_ID11987 Ty3/gypsy_CL235 (3) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 - - not tested Spurpurea289_507 REXdb_ID3716 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_508 REXdb_ID1070 Ty1/copia_CL623 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_510_rc REXdb_ID3717 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGGGCC (tRNA-Met) - not tested Spurpurea289_511 REXdb_ID1071 Ty1/copia_CL066 (14) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_512 REXdb_ID3718 Ty1/copia_CL122 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_514_rc REXdb_ID3719 Ty1/copia_CL140 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Spurpurea289_516_rc REXdb_ID1072 Ty1/copia_CL572 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGAC (tRNA-Met) - not tested Spurpurea289_519_rc REXdb_ID3720 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_52_rc REXdb_ID3721 Ty1/copia_CL338 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_521 REXdb_ID1073 Ty1/copia_CL074 (12) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_525_rc REXdb_ID1074 Ty1/copia_CL177 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_527 REXdb_ID1075 Ty1/copia_CL426 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_528_rc REXdb_ID1076 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_53_rc REXdb_ID11857 Ty3/gypsy_CL104 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 4 TGGTATCAGAGCC (tRNA-Met) - not tested Spurpurea289_530_rc REXdb_ID13437 Ty3/gypsy_CL242 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Spurpurea289_532_rc REXdb_ID1077 Ty1/copia_CL082 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_54_rc REXdb_ID1078 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_542 REXdb_ID3722 Ty1/copia_CL614 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Spurpurea289_546_rc REXdb_ID11946 Ty3/gypsy_CL236 (3) Class_I::LTR::Ty3/gypsy::chromovirus::CRM - + + + + - - + - - not tested not tested 5 TGGTATCAAAGCTAA (tRNA-Met) - not tested Spurpurea289_547 REXdb_ID3723 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Spurpurea289_548_rc REXdb_ID5326 Ty1/copia_CL064 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATTAGAGCT (tRNA-Met) - not tested Spurpurea289_553_rc REXdb_ID3724 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Spurpurea289_556_rc REXdb_ID1079 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_56 REXdb_ID1080 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Spurpurea289_561_rc REXdb_ID1081 Ty1/copia_CL310 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_563_rc REXdb_ID13241 Ty3/gypsy_CL097 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Spurpurea289_565_rc REXdb_ID1082 Ty1/copia_CL177 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_567_rc REXdb_ID1083 Ty1/copia_CL177 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_57 REXdb_ID1084 Ty1/copia_CL121 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Spurpurea289_575 REXdb_ID1085 Ty1/copia_CL226 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Spurpurea289_577_rc REXdb_ID13255 Ty3/gypsy_CL118 (8) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_578_rc REXdb_ID1086 Ty1/copia_CL226 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Spurpurea289_580 REXdb_ID3725 Ty1/copia_CL145 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_582_rc REXdb_ID1087 Ty1/copia_CL091 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_583 REXdb_ID1088 Ty1/copia_CL093 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Spurpurea289_585_rc REXdb_ID3726 Ty1/copia_CL423 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_586 REXdb_ID1089 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Spurpurea289_587_rc REXdb_ID1090 Ty1/copia_CL066 (14) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_588_rc REXdb_ID1091 Ty1/copia_CL305 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_59 REXdb_ID3727 Ty1/copia_CL311 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Spurpurea289_591 REXdb_ID3728 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_592_rc REXdb_ID13304 Ty3/gypsy_CL129 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Spurpurea289_593 REXdb_ID13769 Ty3/gypsy_CL709 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGAGGAAACAC (tRNA-Cys) - not tested Spurpurea289_594_rc REXdb_ID11840 Ty3/gypsy_CL090 (11) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Spurpurea289_595 REXdb_ID3729 Ty1/copia_CL625 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCGG (tRNA-Met) - not tested Spurpurea289_599 REXdb_ID1092 Ty1/copia_CL229 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_6_rc REXdb_ID1119 Ty1/copia_CL231 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGTCAGGTTTC (tRNA-Met) - not tested Spurpurea289_60_rc REXdb_ID1096 Ty1/copia_CL306 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Spurpurea289_602_rc REXdb_ID1093 Ty1/copia_CL624 (2) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATTAGAGCG (tRNA-Met) - not tested Spurpurea289_603 REXdb_ID13172 Ty3/gypsy_CL067 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Spurpurea289_604_rc REXdb_ID1094 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_605 REXdb_ID1095 Ty1/copia_CL390 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTGGTTA (tRNA-Met) - not tested Spurpurea289_607_rc REXdb_ID3730 Ty1/copia_CL625 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCGG (tRNA-Met) - not tested Spurpurea289_61 REXdb_ID3731 Ty1/copia_CL144 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_610 REXdb_ID1097 Ty1/copia_CL093 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_613_rc REXdb_ID1098 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Spurpurea289_614_rc REXdb_ID1099 Ty1/copia_CL066 (14) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_617_rc REXdb_ID1100 Ty1/copia_CL058 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAGG (tRNA-Met) - not tested Spurpurea289_618_rc REXdb_ID3732 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_62 REXdb_ID3733 Ty1/copia_CL622 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Spurpurea289_620_rc REXdb_ID13175 Ty3/gypsy_CL067 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Spurpurea289_625 REXdb_ID3734 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCGA (tRNA-Met) - not tested Spurpurea289_626_rc REXdb_ID3735 Ty1/copia_CL140 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Spurpurea289_629 REXdb_ID1101 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGGT (tRNA-Met) - not tested Spurpurea289_63_rc REXdb_ID1103 Ty1/copia_CL626 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_632 REXdb_ID3736 Ty1/copia_CL105 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_633_rc REXdb_ID1102 Ty1/copia_CL058 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAGG (tRNA-Met) - not tested Spurpurea289_64 REXdb_ID1104 Ty1/copia_CL082 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_642 REXdb_ID3737 Ty1/copia_CL227 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Spurpurea289_643_rc REXdb_ID3738 Ty1/copia_CL409 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Spurpurea289_644 REXdb_ID3739 Ty1/copia_CL225 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_646 REXdb_ID11841 Ty3/gypsy_CL090 (11) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_647 REXdb_ID1105 Ty1/copia_CL121 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Spurpurea289_649 REXdb_ID13243 Ty3/gypsy_CL098 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - + - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Spurpurea289_65_rc REXdb_ID5327 Ty1/copia_CL221 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_652 REXdb_ID1106 Ty1/copia_CL045 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_654_rc REXdb_ID13283 Ty3/gypsy_CL119 (8) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_657_rc REXdb_ID3740 Ty1/copia_CL224 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_660_rc REXdb_ID1107 Ty1/copia_CL058 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCAAGG (tRNA-Met) - not tested Spurpurea289_661 REXdb_ID1108 Ty1/copia_CL627 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Spurpurea289_663_rc REXdb_ID2594 Ty1/copia_CL037 (24) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - ATCAGTACGATG (tRNA-Gly) Spurpurea289_665_rc REXdb_ID13564 Ty3/gypsy_CL350 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Spurpurea289_667 REXdb_ID3741 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_673_rc REXdb_ID13258 Ty3/gypsy_CL118 (8) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_675 REXdb_ID1109 Ty1/copia_CL226 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTC (tRNA-Met) - not tested Spurpurea289_677_rc REXdb_ID13240 Ty3/gypsy_CL097 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_678 REXdb_ID3742 Ty1/copia_CL628 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Spurpurea289_679_rc REXdb_ID1110 Ty1/copia_CL627 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_68_rc REXdb_ID1113 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_680_rc REXdb_ID3743 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_681_rc REXdb_ID1111 Ty1/copia_CL093 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_684_rc REXdb_ID3744 Ty1/copia_CL144 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Spurpurea289_688 REXdb_ID1112 Ty1/copia_CL308 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_69_rc REXdb_ID1118 Ty1/copia_CL303 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_690_rc REXdb_ID1114 Ty1/copia_CL425 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_691 REXdb_ID1115 Ty1/copia_CL309 (4) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_693 REXdb_ID1116 Ty1/copia_CL093 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Spurpurea289_694 REXdb_ID1117 Ty1/copia_CL217 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_698_rc REXdb_ID3745 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATAAGAGCC (tRNA-Met) - not tested Spurpurea289_699 REXdb_ID3746 Ty1/copia_CL228 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_70 REXdb_ID2951 Ty1/copia_CL084 (10) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGC (tRNA-Met) - not tested Spurpurea289_703 REXdb_ID3747 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_704 REXdb_ID1120 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Spurpurea289_705 REXdb_ID5328 Ty1/copia_CL064 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_71_rc REXdb_ID1123 Ty1/copia_CL092 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_712_rc REXdb_ID3748 Ty1/copia_CL629 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_715 REXdb_ID3749 Ty1/copia_CL105 (9) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_717_rc REXdb_ID1121 Ty1/copia_CL066 (14) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_718 REXdb_ID3750 Ty1/copia_CL299 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCTGGTT (tRNA-Met) - not tested Spurpurea289_719 REXdb_ID1122 Ty1/copia_CL426 (3) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTGTCAGAGC (tRNA-Met) - not tested Spurpurea289_72 REXdb_ID3751 Ty1/copia_CL590 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_721 REXdb_ID3752 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Spurpurea289_723_rc REXdb_ID1124 Ty1/copia_CL093 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Spurpurea289_725_rc REXdb_ID13191 Ty3/gypsy_CL070 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCTGGTTAC (tRNA-Met) - not tested Spurpurea289_726 REXdb_ID13253 Ty3/gypsy_CL118 (8) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCGG (tRNA-Met) - not tested Spurpurea289_729 REXdb_ID1125 Ty1/copia_CL058 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Spurpurea289_730_rc REXdb_ID1126 Ty1/copia_CL082 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_735_rc REXdb_ID1127 Ty1/copia_CL091 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Spurpurea289_738 REXdb_ID11853 Ty3/gypsy_CL104 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGCGAATCCAC (tRNA-Arg) - not tested Spurpurea289_74_rc REXdb_ID1131 Ty1/copia_CL309 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_740 REXdb_ID1128 Ty1/copia_CL619 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Spurpurea289_742 REXdb_ID1129 Ty1/copia_CL143 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_744 REXdb_ID3753 Ty1/copia_CL629 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAAC (tRNA-Met) - not tested Spurpurea289_747 REXdb_ID3754 Ty1/copia_CL311 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Spurpurea289_748 REXdb_ID1130 Ty1/copia_CL091 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Spurpurea289_75_rc REXdb_ID3756 Ty1/copia_CL207 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_750 REXdb_ID1132 Ty1/copia_CL304 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_751_rc REXdb_ID1133 Ty1/copia_CL428 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Spurpurea289_753 REXdb_ID1134 Ty1/copia_CL218 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_754 REXdb_ID1135 Ty1/copia_CL121 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Spurpurea289_755_rc REXdb_ID1136 Ty1/copia_CL092 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Spurpurea289_756_rc REXdb_ID1137 Ty1/copia_CL173 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_757 REXdb_ID3755 Ty1/copia_CL140 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_759 REXdb_ID1138 Ty1/copia_CL275 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_760_rc REXdb_ID1139 Ty1/copia_CL231 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Spurpurea289_763_rc REXdb_ID1140 Ty1/copia_CL229 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_764_rc REXdb_ID1141 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_766 REXdb_ID1142 Ty1/copia_CL305 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_768_rc REXdb_ID1143 Ty1/copia_CL630 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_77 REXdb_ID3757 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_770 REXdb_ID3758 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Spurpurea289_772_rc REXdb_ID13565 Ty3/gypsy_CL350 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCTGGTTT (tRNA-Met) - not tested Spurpurea289_775_rc REXdb_ID13281 Ty3/gypsy_CL119 (8) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_776_rc REXdb_ID1144 Ty1/copia_CL143 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_777_rc REXdb_ID3759 Ty1/copia_CL052 (18) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_778_rc REXdb_ID3760 Ty1/copia_CL617 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_779 REXdb_ID13302 Ty3/gypsy_CL129 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Spurpurea289_781_rc REXdb_ID3761 Ty1/copia_CL628 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAAGCC (tRNA-Met) - not tested Spurpurea289_782_rc REXdb_ID1145 Ty1/copia_CL230 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATTAGAGCT (tRNA-Met) - not tested Spurpurea289_786_rc REXdb_ID3762 Ty1/copia_CL424 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_788_rc REXdb_ID13181 Ty3/gypsy_CL070 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_789 REXdb_ID1146 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_79_rc REXdb_ID1148 Ty1/copia_CL613 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Spurpurea289_790_rc REXdb_ID1147 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_792_rc REXdb_ID11855 Ty3/gypsy_CL104 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Spurpurea289_796_rc REXdb_ID3763 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGA (tRNA-Met) - not tested Spurpurea289_800 REXdb_ID13177 Ty3/gypsy_CL067 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_801_rc REXdb_ID3764 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_803 REXdb_ID3765 Ty1/copia_CL299 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCTGGTT (tRNA-Met) - not tested Spurpurea289_804_rc REXdb_ID3766 Ty1/copia_CL225 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_806 REXdb_ID1149 Ty1/copia_CL310 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_808 REXdb_ID1150 Ty1/copia_CL093 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_81_rc REXdb_ID1152 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCTGGTTT (tRNA-Met) - not tested Spurpurea289_810 REXdb_ID3767 Ty1/copia_CL144 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_811_rc REXdb_ID13770 Ty3/gypsy_CL710 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAAAGCCT (tRNA-Met) - not tested Spurpurea289_815_rc REXdb_ID11953 Ty3/gypsy_CL351 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTCG (tRNA-Met) - not tested Spurpurea289_816_rc REXdb_ID3768 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_817 REXdb_ID1151 Ty1/copia_CL380 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_82 REXdb_ID3769 Ty1/copia_CL220 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_820_rc REXdb_ID3770 Ty1/copia_CL224 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_821 REXdb_ID13189 Ty3/gypsy_CL070 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Spurpurea289_822_rc REXdb_ID1153 Ty1/copia_CL428 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Spurpurea289_823_rc REXdb_ID3771 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_825_rc REXdb_ID3772 Ty1/copia_CL311 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Spurpurea289_826 REXdb_ID3773 Ty1/copia_CL140 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_827_rc REXdb_ID1154 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGGT (tRNA-Met) - not tested Spurpurea289_83 REXdb_ID3774 Ty1/copia_CL140 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Spurpurea289_830_rc REXdb_ID1155 Ty1/copia_CL428 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Spurpurea289_831 REXdb_ID3775 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_832_rc REXdb_ID3776 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_833_rc REXdb_ID13306 Ty3/gypsy_CL129 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Spurpurea289_836_rc REXdb_ID1156 Ty1/copia_CL173 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_837_rc REXdb_ID1157 Ty1/copia_CL231 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGTCAGGTTTC (tRNA-Met) - not tested Spurpurea289_838 REXdb_ID11921 Ty3/gypsy_CL189 (4) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCAAGG (tRNA-Met) - not tested Spurpurea289_840_rc REXdb_ID1158 Ty1/copia_CL058 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_844 REXdb_ID1159 Ty1/copia_CL631 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Spurpurea289_845 REXdb_ID1160 Ty1/copia_CL066 (14) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_846 REXdb_ID1161 Ty1/copia_CL066 (14) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Spurpurea289_847_rc REXdb_ID3777 Ty1/copia_CL311 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Spurpurea289_849_rc REXdb_ID1162 Ty1/copia_CL632 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Spurpurea289_85 REXdb_ID3778 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Spurpurea289_853_rc REXdb_ID1163 Ty1/copia_CL230 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_854 REXdb_ID1164 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Spurpurea289_863_rc REXdb_ID1165 Ty1/copia_CL092 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_866_rc REXdb_ID3779 Ty1/copia_CL052 (18) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_868 REXdb_ID13279 Ty3/gypsy_CL119 (8) Class_I::LTR::Ty3/gypsy::chromovirus::Reina - + + + + - + - - - not tested not tested 5 TGGTATCAGAGCCACG (tRNA-Met) - not tested Spurpurea289_869 REXdb_ID3780 Ty1/copia_CL144 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_872_rc REXdb_ID13186 Ty3/gypsy_CL070 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCAAGGTT (tRNA-Met) - not tested Spurpurea289_873_rc REXdb_ID1166 Ty1/copia_CL074 (12) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_875 REXdb_ID11954 Ty3/gypsy_CL351 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGCCTGG (tRNA-Met) - not tested Spurpurea289_877_rc REXdb_ID3781 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_880_rc REXdb_ID1167 Ty1/copia_CL143 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_884_rc REXdb_ID1168 Ty1/copia_CL173 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_885_rc REXdb_ID1169 Ty1/copia_CL380 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTGACCCAAACAA (tRNA-Ile) - not tested Spurpurea289_888 REXdb_ID11531 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 6 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_890 REXdb_ID1170 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_891 REXdb_ID1171 Ty1/copia_CL631 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Spurpurea289_892 REXdb_ID1172 Ty1/copia_CL092 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_893_rc REXdb_ID1173 Ty1/copia_CL218 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Spurpurea289_894_rc REXdb_ID1174 Ty1/copia_CL615 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_897 REXdb_ID3782 Ty1/copia_CL427 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_899 REXdb_ID3783 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_900 REXdb_ID3784 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCGA (tRNA-Met) - not tested Spurpurea289_901 REXdb_ID1175 Ty1/copia_CL177 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_903_rc REXdb_ID1813 Ty1/copia_CL053 (17) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTTA (tRNA-Met) - not tested Spurpurea289_905 REXdb_ID1176 Ty1/copia_CL074 (12) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_908_rc REXdb_ID3785 Ty1/copia_CL427 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTAAG (tRNA-Ile) - not tested Spurpurea289_909_rc REXdb_ID3786 Ty1/copia_CL422 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_91 REXdb_ID1177 Ty1/copia_CL632 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Spurpurea289_910_rc REXdb_ID1178 Ty1/copia_CL093 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_913_rc REXdb_ID1179 Ty1/copia_CL218 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCTGAGCT (tRNA-Val) - not tested Spurpurea289_914_rc REXdb_ID3787 Ty1/copia_CL307 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAAGCCT (tRNA-Met) - not tested Spurpurea289_918_rc REXdb_ID3788 Ty1/copia_CL052 (18) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTTGTTGAGA (tRNA-?) - not tested Spurpurea289_922 REXdb_ID1180 Ty1/copia_CL630 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_926 REXdb_ID1181 Ty1/copia_CL309 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTGTCAGAGC (tRNA-Met) - not tested Spurpurea289_928_rc REXdb_ID1182 Ty1/copia_CL121 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Spurpurea289_929 REXdb_ID5329 Ty1/copia_CL064 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_930_rc REXdb_ID1183 Ty1/copia_CL092 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Spurpurea289_931 REXdb_ID3789 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_934 REXdb_ID1184 Ty1/copia_CL058 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCA (tRNA-Ile) - not tested Spurpurea289_935_rc REXdb_ID13170 Ty3/gypsy_CL067 (15) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCTGGTTA (tRNA-Met) - not tested Spurpurea289_936_rc REXdb_ID5330 Ty1/copia_CL219 (5) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_940 REXdb_ID1185 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAA (tRNA-Ile) - not tested Spurpurea289_941_rc REXdb_ID1186 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_942_rc REXdb_ID3790 Ty1/copia_CL030 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Spurpurea289_944_rc REXdb_ID3791 Ty1/copia_CL228 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_945_rc REXdb_ID1187 Ty1/copia_CL058 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAGG (tRNA-Met) - not tested Spurpurea289_948_rc REXdb_ID1188 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_949_rc REXdb_ID3792 Ty1/copia_CL024 (32) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_95_rc REXdb_ID1190 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_955 REXdb_ID1189 Ty1/copia_CL306 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Spurpurea289_958_rc REXdb_ID3793 Ty1/copia_CL029 (27) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_96_rc REXdb_ID3795 Ty1/copia_CL227 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTAGGT (tRNA-Met) - not tested Spurpurea289_960 REXdb_ID3794 Ty1/copia_CL220 (5) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_962_rc REXdb_ID13280 Ty3/gypsy_CL119 (8) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCACGT (tRNA-Met) - not tested Spurpurea289_963_rc REXdb_ID1191 Ty1/copia_CL121 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_964_rc REXdb_ID1192 Ty1/copia_CL066 (14) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_965_rc REXdb_ID1193 Ty1/copia_CL093 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_967 REXdb_ID1194 Ty1/copia_CL074 (12) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCATAGC (tRNA-Met) - not tested Spurpurea289_969 REXdb_ID13547 Ty3/gypsy_CL336 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCTGGTTAC (tRNA-Met) - not tested Spurpurea289_97 REXdb_ID1195 Ty1/copia_CL214 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Spurpurea289_970_rc REXdb_ID13245 Ty3/gypsy_CL098 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCACCAGATAT (tRNA-Lys) - not tested Spurpurea289_973_rc REXdb_ID13373 Ty3/gypsy_CL179 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_980_rc REXdb_ID11858 Ty3/gypsy_CL104 (9) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - 5 TGGTATCAGAGT (tRNA-Met) - not tested Spurpurea289_985_rc REXdb_ID1196 Ty1/copia_CL230 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Spurpurea289_986 REXdb_ID11838 Ty3/gypsy_CL090 (11) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCCTGGTT (tRNA-Met) - not tested Spurpurea289_987 REXdb_ID1197 Ty1/copia_CL626 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Spurpurea289_99_rc REXdb_ID1199 Ty1/copia_CL218 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Spurpurea289_993 REXdb_ID13303 Ty3/gypsy_CL129 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 4 TGGTATCAGAGCAA (tRNA-Met) - not tested Spurpurea289_997_rc REXdb_ID3796 Ty1/copia_CL307 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Spurpurea289_999 REXdb_ID1198 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested STALKER4 REXdb_ID5432 Ty3/gypsy_CL711 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::non-chromo-outgroup - + + + + - - - - - not tested not tested not tested not tested not tested not tested Stuberosum206_19_rc REXdb_ID13771 Ty3/gypsy_CL712 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Stuberosum206_204_rc REXdb_ID1814 Ty1/copia_CL053 (17) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTT (tRNA-Met) - not tested Stuberosum206_206_rc REXdb_ID1200 Ty1/copia_CL633 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Stuberosum206_212 REXdb_ID1201 Ty1/copia_CL067 (14) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Stuberosum206_215_rc REXdb_ID1202 Ty1/copia_CL634 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Stuberosum206_218 REXdb_ID1203 Ty1/copia_CL705 (1) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Stuberosum206_223_rc REXdb_ID13772 Ty3/gypsy_CL713 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Stuberosum206_232_rc REXdb_ID1204 Ty1/copia_CL067 (14) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGTCT (tRNA-Met) - not tested Stuberosum206_241 REXdb_ID1205 Ty1/copia_CL635 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGTTA (tRNA-Met) - not tested Stuberosum206_258 REXdb_ID13773 Ty3/gypsy_CL714 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCATTG (tRNA-Thr) - not tested Stuberosum206_259_rc REXdb_ID12323 Ty3/gypsy_CL715 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - + - - 4 TGGTATCAGAGCAA (tRNA-Met) - not tested Stuberosum206_263 REXdb_ID1206 Ty1/copia_CL706 (1) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 - - not tested Stuberosum206_270_rc REXdb_ID1207 Ty1/copia_CL636 (2) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAAAGCAAGG (tRNA-Ile) - not tested Stuberosum206_275 REXdb_ID1208 Ty1/copia_CL637 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Stuberosum206_295 REXdb_ID1209 Ty1/copia_CL636 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAGG (tRNA-Met) - not tested Stuberosum206_33 REXdb_ID1210 Ty1/copia_CL637 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Stuberosum206_44_rc REXdb_ID1211 Ty1/copia_CL634 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCC (tRNA-Met) - not tested Stuberosum206_56_rc REXdb_ID1212 Ty1/copia_CL635 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCTA (tRNA-Met) - not tested Stuberosum206_60_rc REXdb_ID13774 Ty3/gypsy_CL716 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - - - - - - - 5 TGGTGCTTTCAT (tRNA-Thr) - not tested Stuberosum206_66 REXdb_ID1213 Ty1/copia_CL067 (14) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAAAGCAA (tRNA-Ile) - not tested Stuberosum206_75 REXdb_ID1214 Ty1/copia_CL633 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested TABOR REXdb_ID5433 Ty3/gypsy_CL290 (2) Class_I::LTR::Ty3/gypsy::non-chromovirus::non-chromo-outgroup - + + + + - - - - - not tested not tested not tested not tested not tested not tested Taestivum296_1_rc REXdb_ID13466 Ty3/gypsy_CL253 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 4 TGGTATCAGAGGC (tRNA-Met) - not tested Taestivum296_101 REXdb_ID13775 Ty3/gypsy_CL717 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATG (tRNA-Met) - not tested Taestivum296_104 REXdb_ID13776 Ty3/gypsy_CL718 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Taestivum296_105_rc REXdb_ID13777 Ty3/gypsy_CL719 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Taestivum296_11 REXdb_ID13778 Ty3/gypsy_CL720 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCGA (tRNA-Met) - not tested Taestivum296_110 REXdb_ID13451 Ty3/gypsy_CL248 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - - - - - - - 5 TGGTACTCAGAG (tRNA-?) - not tested Taestivum296_112_rc REXdb_ID1215 Ty1/copia_CL124 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAACAGAGCC (tRNA-Met) - not tested Taestivum296_113_rc REXdb_ID1216 Ty1/copia_CL035 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATACAGAG (tRNA-?) - not tested Taestivum296_114_rc REXdb_ID1217 Ty1/copia_CL060 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATACAGAG (tRNA-?) - not tested Taestivum296_115_rc REXdb_ID1218 Ty1/copia_CL251 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACGCT (tRNA-?) - not tested Taestivum296_116_rc REXdb_ID13307 Ty3/gypsy_CL130 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGCAG (tRNA-?) - not tested Taestivum296_122_rc REXdb_ID1219 Ty1/copia_CL035 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATACAGAG (tRNA-?) - not tested Taestivum296_123 REXdb_ID13454 Ty3/gypsy_CL249 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Taestivum296_125 REXdb_ID13566 Ty3/gypsy_CL352 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCGCATCTAA (tRNA-Gly) - not tested Taestivum296_126 REXdb_ID13568 Ty3/gypsy_CL353 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTTATCAGAG (tRNA-?) - not tested Taestivum296_129_rc REXdb_ID1220 Ty1/copia_CL429 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATAAGAGC (tRNA-Met) - not tested Taestivum296_133 REXdb_ID1221 Ty1/copia_CL430 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Taestivum296_134 REXdb_ID1222 Ty1/copia_CL033 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGATGC (tRNA-Met) - not tested Taestivum296_135 REXdb_ID13457 Ty3/gypsy_CL250 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Taestivum296_136 REXdb_ID13309 Ty3/gypsy_CL130 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Taestivum296_137_rc REXdb_ID13779 Ty3/gypsy_CL721 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Taestivum296_140_rc REXdb_ID1223 Ty1/copia_CL035 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Taestivum296_141 REXdb_ID1224 Ty1/copia_CL035 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAGTCAGAG (tRNA-?) - not tested Taestivum296_142 REXdb_ID1225 Ty1/copia_CL251 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACGCT (tRNA-?) - not tested Taestivum296_143 REXdb_ID1226 Ty1/copia_CL124 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTCATCAGAG (tRNA-Lys) - not tested Taestivum296_144 REXdb_ID13297 Ty3/gypsy_CL125 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGGTT (tRNA-?) - not tested Taestivum296_145_rc REXdb_ID13376 Ty3/gypsy_CL190 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - + 5 TGGTATTCAGAG (tRNA-?) - not tested Taestivum296_146_rc REXdb_ID13378 Ty3/gypsy_CL190 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Taestivum296_148 REXdb_ID13570 Ty3/gypsy_CL354 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGACG (tRNA-Leu) - not tested Taestivum296_150 REXdb_ID13572 Ty3/gypsy_CL355 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina - + + + + - + - - - not tested not tested 5 TGGTATCAAAGCCAG (tRNA-Met) - not tested Taestivum296_155 REXdb_ID9774 Ty3/gypsy_CL722 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCCACCGTGGGGC (tRNA-Lys) - not tested Taestivum296_156_rc REXdb_ID13780 Ty3/gypsy_CL723 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGGC (tRNA-Met) - not tested Taestivum296_158 REXdb_ID13380 Ty3/gypsy_CL191 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCGGAGCC (tRNA-Met) - not tested Taestivum296_159_rc REXdb_ID13384 Ty3/gypsy_CL192 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATT (tRNA-Met) - not tested Taestivum296_160 REXdb_ID13574 Ty3/gypsy_CL356 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATACAGAG (tRNA-?) - not tested Taestivum296_161 REXdb_ID1227 Ty1/copia_CL254 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGACC (tRNA-Met) - not tested Taestivum296_163_rc REXdb_ID13460 Ty3/gypsy_CL251 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGAC (tRNA-Met) - not tested Taestivum296_164_rc REXdb_ID1228 Ty1/copia_CL124 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAACAGAGCC (tRNA-Met) - not tested Taestivum296_165_rc REXdb_ID1229 Ty1/copia_CL060 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATACAGAG (tRNA-?) - not tested Taestivum296_166_rc REXdb_ID1230 Ty1/copia_CL060 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Taestivum296_167 REXdb_ID13311 Ty3/gypsy_CL130 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGCAG (tRNA-?) - not tested Taestivum296_17 REXdb_ID13781 Ty3/gypsy_CL724 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Taestivum296_172_rc REXdb_ID13310 Ty3/gypsy_CL130 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Taestivum296_175 REXdb_ID1231 Ty1/copia_CL035 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAGTTAGAG (tRNA-?) - not tested Taestivum296_177 REXdb_ID1232 Ty1/copia_CL035 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAGTCAGAG (tRNA-?) - not tested Taestivum296_178_rc REXdb_ID13782 Ty3/gypsy_CL725 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Taestivum296_18 REXdb_ID1233 Ty1/copia_CL124 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTCATCAGAG (tRNA-Lys) - not tested Taestivum296_180_rc REXdb_ID13463 Ty3/gypsy_CL252 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCATGAG (tRNA-?) - not tested Taestivum296_181 REXdb_ID1234 Ty1/copia_CL060 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATACAGAG (tRNA-?) - not tested Taestivum296_182 REXdb_ID1235 Ty1/copia_CL124 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAACAGAGCC (tRNA-Met) - not tested Taestivum296_184_rc REXdb_ID13453 Ty3/gypsy_CL248 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - - - - - - - 5 TGGTACTCAGAG (tRNA-?) - not tested Taestivum296_186 REXdb_ID1236 Ty1/copia_CL431 (3) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGCATCGGAGC (tRNA-?) - not tested Taestivum296_189_rc REXdb_ID13458 Ty3/gypsy_CL250 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Taestivum296_19_rc REXdb_ID13313 Ty3/gypsy_CL130 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Taestivum296_190 REXdb_ID1237 Ty1/copia_CL033 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGATG (tRNA-Met) - not tested Taestivum296_191 REXdb_ID1238 Ty1/copia_CL033 (25) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATTAGAGCCT (tRNA-Met) - not tested Taestivum296_194_rc REXdb_ID1239 Ty1/copia_CL035 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATACAGAG (tRNA-?) - not tested Taestivum296_196 REXdb_ID1240 Ty1/copia_CL638 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAACAAGAG (tRNA-?) - not tested Taestivum296_197_rc REXdb_ID13783 Ty3/gypsy_CL726 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTACTCAGAT (tRNA-?) - not tested Taestivum296_198_rc REXdb_ID1241 Ty1/copia_CL251 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGACT (tRNA-?) - not tested Taestivum296_2 REXdb_ID13784 Ty3/gypsy_CL727 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCGGAGTGAGAG (tRNA-Ser) - not tested Taestivum296_20 REXdb_ID13576 Ty3/gypsy_CL357 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Taestivum296_203 REXdb_ID1242 Ty1/copia_CL060 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATACAGAG (tRNA-?) - not tested Taestivum296_204 REXdb_ID13785 Ty3/gypsy_CL728 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGGCGGGGC (tRNA-Met) - not tested Taestivum296_206_rc REXdb_ID13388 Ty3/gypsy_CL193 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGAC (tRNA-Met) - not tested Taestivum296_207 REXdb_ID1243 Ty1/copia_CL109 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - + 5 TGGTGTCAGAGC (tRNA-Met) - not tested Taestivum296_210_rc REXdb_ID1244 Ty1/copia_CL312 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Taestivum296_211_rc REXdb_ID13567 Ty3/gypsy_CL352 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATTCAGAG (tRNA-?) - not tested Taestivum296_214 REXdb_ID13392 Ty3/gypsy_CL194 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGAC (tRNA-Met) - not tested Taestivum296_216_rc REXdb_ID1245 Ty1/copia_CL429 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATAAGAGC (tRNA-Met) - not tested Taestivum296_223_rc REXdb_ID13786 Ty3/gypsy_CL729 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 - - not tested Taestivum296_225 REXdb_ID1246 Ty1/copia_CL035 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATACAGAG (tRNA-?) - not tested Taestivum296_23 REXdb_ID13787 Ty3/gypsy_CL730 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - + 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Taestivum296_232_rc REXdb_ID1247 Ty1/copia_CL060 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Taestivum296_233 REXdb_ID1248 Ty1/copia_CL430 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Taestivum296_237 REXdb_ID13788 Ty3/gypsy_CL731 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Taestivum296_245 REXdb_ID2595 Ty1/copia_CL104 (9) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - + - 5 - - - Taestivum296_246 REXdb_ID13379 Ty3/gypsy_CL190 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Taestivum296_249 REXdb_ID13789 Ty3/gypsy_CL732 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCCGAAGT (tRNA-Ile) - not tested Taestivum296_250_rc REXdb_ID1249 Ty1/copia_CL060 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTCATCAGAG (tRNA-Lys) - not tested Taestivum296_252_rc REXdb_ID2596 Ty1/copia_CL104 (9) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - - Taestivum296_255 REXdb_ID1250 Ty1/copia_CL035 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Taestivum296_257 REXdb_ID1251 Ty1/copia_CL060 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATACAGAG (tRNA-?) - not tested Taestivum296_26 REXdb_ID13469 Ty3/gypsy_CL254 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATTC (tRNA-Met) - not tested Taestivum296_260 REXdb_ID13387 Ty3/gypsy_CL192 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATT (tRNA-Met) - not tested Taestivum296_261 REXdb_ID1252 Ty1/copia_CL109 (8) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGACC (tRNA-Met) - not tested Taestivum296_263_rc REXdb_ID1253 Ty1/copia_CL035 (25) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTACTCATTC (tRNA-?) - not tested Taestivum296_264_rc REXdb_ID13471 Ty3/gypsy_CL254 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATTC (tRNA-Met) - not tested Taestivum296_265 REXdb_ID13390 Ty3/gypsy_CL193 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCACAATTCAT (tRNA-Val) - not tested Taestivum296_266_rc REXdb_ID1254 Ty1/copia_CL432 (3) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGACG (tRNA-?) - not tested Taestivum296_270_rc REXdb_ID1255 Ty1/copia_CL109 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGACG (tRNA-?) - not tested Taestivum296_273_rc REXdb_ID13575 Ty3/gypsy_CL356 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATACAAAG (tRNA-?) - not tested Taestivum296_274 REXdb_ID13326 Ty3/gypsy_CL147 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCATGAG (tRNA-?) - not tested Taestivum296_279_rc REXdb_ID13328 Ty3/gypsy_CL147 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATTCAGAG (tRNA-?) - not tested Taestivum296_280 REXdb_ID1256 Ty1/copia_CL033 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - + 5 TGGTATCAGAGCTAGGTT (tRNA-Met) - not tested Taestivum296_282_rc REXdb_ID13381 Ty3/gypsy_CL191 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Taestivum296_283_rc REXdb_ID4800 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTTA not tested Taestivum296_284_rc REXdb_ID13383 Ty3/gypsy_CL191 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Taestivum296_285_rc REXdb_ID13394 Ty3/gypsy_CL194 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGAC (tRNA-Met) - not tested Taestivum296_287 REXdb_ID13577 Ty3/gypsy_CL357 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGG (tRNA-Met) - not tested Taestivum296_29_rc REXdb_ID13791 Ty3/gypsy_CL734 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCATGAGAGC (tRNA-?) - not tested Taestivum296_291_rc REXdb_ID1257 Ty1/copia_CL035 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Taestivum296_292_rc REXdb_ID13790 Ty3/gypsy_CL733 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATTCAGAG (tRNA-?) - not tested Taestivum296_294 REXdb_ID13573 Ty3/gypsy_CL355 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGTCG (tRNA-?) - not tested Taestivum296_296_rc REXdb_ID13569 Ty3/gypsy_CL353 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTAATCCGAG (tRNA-?) - not tested Taestivum296_298_rc REXdb_ID1258 Ty1/copia_CL060 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATACAGAG (tRNA-?) - not tested Taestivum296_302 REXdb_ID1259 Ty1/copia_CL060 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Taestivum296_303 REXdb_ID13571 Ty3/gypsy_CL354 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGAC (tRNA-Met) - not tested Taestivum296_305_rc REXdb_ID13792 Ty3/gypsy_CL735 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGCTA (tRNA-?) - not tested Taestivum296_307_rc REXdb_ID13793 Ty3/gypsy_CL736 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATTCAGAG (tRNA-?) - not tested Taestivum296_309_rc REXdb_ID13794 Ty3/gypsy_CL737 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - - - - - - - 5 TGGTATCTAGAG (tRNA-?) - not tested Taestivum296_31 REXdb_ID13452 Ty3/gypsy_CL248 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - - - - - - - 5 TGGTACTCAGAG (tRNA-?) - not tested Taestivum296_310 REXdb_ID13386 Ty3/gypsy_CL192 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATT (tRNA-Met) - not tested Taestivum296_313 REXdb_ID1260 Ty1/copia_CL035 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Taestivum296_316 REXdb_ID1261 Ty1/copia_CL033 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCT (tRNA-Met) - not tested Taestivum296_32 REXdb_ID1262 Ty1/copia_CL060 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 - - not tested Taestivum296_322 REXdb_ID1263 Ty1/copia_CL035 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATACAGAG (tRNA-?) - not tested Taestivum296_325 REXdb_ID1264 Ty1/copia_CL035 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Taestivum296_327 REXdb_ID1265 Ty1/copia_CL431 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTGTCAGAGC (tRNA-Met) - not tested Taestivum296_332 REXdb_ID1266 Ty1/copia_CL035 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAACCAGAG (tRNA-?) - not tested Taestivum296_335 REXdb_ID1267 Ty1/copia_CL035 (25) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTAATCAGAG (tRNA-?) - not tested Taestivum296_337_rc REXdb_ID1268 Ty1/copia_CL035 (25) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAAGA (tRNA-Met) - not tested Taestivum296_338_rc REXdb_ID13389 Ty3/gypsy_CL193 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGAC (tRNA-Met) - not tested Taestivum296_339 REXdb_ID13795 Ty3/gypsy_CL738 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTACTCAGAG (tRNA-?) - not tested Taestivum296_344_rc REXdb_ID13298 Ty3/gypsy_CL125 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCGGGTT (tRNA-?) - not tested Taestivum296_347 REXdb_ID1269 Ty1/copia_CL254 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGACC (tRNA-Met) - not tested Taestivum296_348 REXdb_ID1270 Ty1/copia_CL035 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Taestivum296_353 REXdb_ID1271 Ty1/copia_CL060 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTCATCAGAG (tRNA-Lys) - not tested Taestivum296_355 REXdb_ID13331 Ty3/gypsy_CL147 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATACAGAG (tRNA-?) - not tested Taestivum296_356_rc REXdb_ID1272 Ty1/copia_CL035 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATACAGAG (tRNA-?) - not tested Taestivum296_357 REXdb_ID1273 Ty1/copia_CL430 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Taestivum296_36 REXdb_ID13796 Ty3/gypsy_CL739 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATGC (tRNA-Met) - not tested Taestivum296_360_rc REXdb_ID13797 Ty3/gypsy_CL740 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGACA (tRNA-Met) - not tested Taestivum296_362_rc REXdb_ID1274 Ty1/copia_CL432 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAACCC (tRNA-?) - not tested Taestivum296_364 REXdb_ID13391 Ty3/gypsy_CL193 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCATCAGAGA (tRNA-?) - not tested Taestivum296_365_rc REXdb_ID13798 Ty3/gypsy_CL741 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGAATCAGAGCCA (tRNA-Met) - not tested Taestivum296_367 REXdb_ID1275 Ty1/copia_CL109 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGACG (tRNA-?) - not tested Taestivum296_368 REXdb_ID13464 Ty3/gypsy_CL252 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - + 5 TGGTATCATGAG (tRNA-?) - not tested Taestivum296_370 REXdb_ID13799 Ty3/gypsy_CL742 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Taestivum296_371 REXdb_ID13393 Ty3/gypsy_CL194 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Taestivum296_372 REXdb_ID4801 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - - not tested Taestivum296_374_rc REXdb_ID13455 Ty3/gypsy_CL249 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Taestivum296_375_rc REXdb_ID13800 Ty3/gypsy_CL743 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - - - - - - - 5 TGGCATCAAAGC (tRNA-?) - not tested Taestivum296_376 REXdb_ID1276 Ty1/copia_CL033 (25) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAAGTT (tRNA-Met) - not tested Taestivum296_377 REXdb_ID13801 Ty3/gypsy_CL744 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATT (tRNA-Met) - not tested Taestivum296_378_rc REXdb_ID1277 Ty1/copia_CL109 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTGTCAGAGCC (tRNA-Met) - not tested Taestivum296_383_rc REXdb_ID13382 Ty3/gypsy_CL191 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Taestivum296_388 REXdb_ID1278 Ty1/copia_CL638 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAACAAGAG (tRNA-?) - not tested Taestivum296_39 REXdb_ID13468 Ty3/gypsy_CL253 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCTCAGA (tRNA-?) - not tested Taestivum296_391_rc REXdb_ID13385 Ty3/gypsy_CL192 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGATT (tRNA-Met) - not tested Taestivum296_392 REXdb_ID1279 Ty1/copia_CL033 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCTAGG (tRNA-Met) - not tested Taestivum296_394_rc REXdb_ID4802 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CCAAAAACCTGA not tested Taestivum296_396_rc REXdb_ID13479 Ty3/gypsy_CL267 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGCCT (tRNA-?) - not tested Taestivum296_40_rc REXdb_ID1283 Ty1/copia_CL035 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Taestivum296_403 REXdb_ID13802 Ty3/gypsy_CL745 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Taestivum296_404 REXdb_ID13329 Ty3/gypsy_CL147 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATTCAGAG (tRNA-?) - not tested Taestivum296_405 REXdb_ID1280 Ty1/copia_CL035 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATACAGAG (tRNA-?) - not tested Taestivum296_406_rc REXdb_ID1281 Ty1/copia_CL312 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Taestivum296_407_rc REXdb_ID1282 Ty1/copia_CL254 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAACC (tRNA-?) - not tested Taestivum296_412 REXdb_ID1284 Ty1/copia_CL639 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGACCC (tRNA-Met) - not tested Taestivum296_414 REXdb_ID1285 Ty1/copia_CL035 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGGG (tRNA-?) - not tested Taestivum296_417 REXdb_ID13308 Ty3/gypsy_CL130 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCATTAGAGC (tRNA-?) - not tested Taestivum296_419_rc REXdb_ID13803 Ty3/gypsy_CL746 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - not tested not tested 5 TGGTATCAGATT (tRNA-Met) - not tested Taestivum296_42 REXdb_ID13461 Ty3/gypsy_CL251 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGAC (tRNA-Met) - not tested Taestivum296_43_rc REXdb_ID1286 Ty1/copia_CL431 (3) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGCATCAGAGC (tRNA-Met) - not tested Taestivum296_44 REXdb_ID1287 Ty1/copia_CL060 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Taestivum296_46 REXdb_ID13804 Ty3/gypsy_CL747 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Taestivum296_47_rc REXdb_ID3797 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTAA (tRNA-Met) - not tested Taestivum296_48_rc REXdb_ID1288 Ty1/copia_CL109 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCGGAGA (tRNA-?) - not tested Taestivum296_49_rc REXdb_ID1289 Ty1/copia_CL035 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATACAGAG (tRNA-?) - not tested Taestivum296_5 REXdb_ID1290 Ty1/copia_CL060 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Taestivum296_50 REXdb_ID13312 Ty3/gypsy_CL130 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Taestivum296_51 REXdb_ID13327 Ty3/gypsy_CL147 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATTCAGAG (tRNA-?) - not tested Taestivum296_53 REXdb_ID13299 Ty3/gypsy_CL125 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGGTT (tRNA-?) - not tested Taestivum296_54 REXdb_ID1291 Ty1/copia_CL033 (25) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCGGAGC (tRNA-Met) - not tested Taestivum296_55 REXdb_ID13459 Ty3/gypsy_CL250 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Taestivum296_58_rc REXdb_ID11988 Ty3/gypsy_CL358 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCATGAG (tRNA-?) - not tested Taestivum296_6_rc REXdb_ID13330 Ty3/gypsy_CL147 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Taestivum296_61 REXdb_ID1292 Ty1/copia_CL639 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTCAGAG (tRNA-?) - not tested Taestivum296_63 REXdb_ID13805 Ty3/gypsy_CL748 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 4 TGGTATCAGAGAC (tRNA-Met) - not tested Taestivum296_64 REXdb_ID1293 Ty1/copia_CL432 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGACG (tRNA-?) - not tested Taestivum296_65 REXdb_ID1294 Ty1/copia_CL429 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATAAGAGC (tRNA-Met) - not tested Taestivum296_66 REXdb_ID13806 Ty3/gypsy_CL749 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCATGAG (tRNA-?) - not tested Taestivum296_67_rc REXdb_ID11989 Ty3/gypsy_CL750 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Taestivum296_68_rc REXdb_ID1295 Ty1/copia_CL124 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Taestivum296_71_rc REXdb_ID1296 Ty1/copia_CL035 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATATAGAG (tRNA-?) - not tested Taestivum296_73 REXdb_ID1297 Ty1/copia_CL109 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTGTCAGAGC (tRNA-Met) - not tested Taestivum296_74 REXdb_ID1298 Ty1/copia_CL124 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAACAGAGCC (tRNA-Met) - not tested Taestivum296_75 REXdb_ID13470 Ty3/gypsy_CL254 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCGG (tRNA-Met) - not tested Taestivum296_78 REXdb_ID1299 Ty1/copia_CL460 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGCCA (tRNA-?) - not tested Taestivum296_79_rc REXdb_ID13395 Ty3/gypsy_CL194 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - + - 5 TGGTATCAGAGAC (tRNA-Met) - not tested Taestivum296_80 REXdb_ID13377 Ty3/gypsy_CL190 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - + - 5 TGGTAATCAGAG (tRNA-?) - not tested Taestivum296_82 REXdb_ID1300 Ty1/copia_CL035 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAGTCAGAG (tRNA-?) - not tested Taestivum296_83 REXdb_ID13467 Ty3/gypsy_CL253 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCTAGAG (tRNA-?) - not tested Taestivum296_85 REXdb_ID13462 Ty3/gypsy_CL251 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATTAGAGA (tRNA-?) - not tested Taestivum296_88_rc REXdb_ID13465 Ty3/gypsy_CL252 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCATGAG (tRNA-?) - not tested Taestivum296_9 REXdb_ID1301 Ty1/copia_CL033 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGATG (tRNA-Met) - not tested Taestivum296_90_rc REXdb_ID13456 Ty3/gypsy_CL249 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Taestivum296_92 REXdb_ID13807 Ty3/gypsy_CL751 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTAATCAGAG (tRNA-?) - not tested Taestivum296_94 REXdb_ID1302 Ty1/copia_CL312 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Taestivum296_98_rc REXdb_ID1303 Ty1/copia_CL033 (25) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATTAGAGCCT (tRNA-Met) - not tested Taestivum296_99_rc REXdb_ID13808 Ty3/gypsy_CL752 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Tcacao233_101 REXdb_ID12989 Ty3/gypsy_CL108 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Tcacao233_102 REXdb_ID12993 Ty3/gypsy_CL108 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 - - not tested Tcacao233_125_rc REXdb_ID12991 Ty3/gypsy_CL108 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Tcacao233_127_rc REXdb_ID3798 Ty1/copia_CL640 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Tcacao233_14 REXdb_ID12997 Ty3/gypsy_CL108 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 - - not tested Tcacao233_2 REXdb_ID3799 Ty1/copia_CL640 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAAGCTA (tRNA-Met) - not tested Tcacao233_22_rc REXdb_ID3802 Ty1/copia_CL642 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 - - not tested Tcacao233_220 REXdb_ID5331 Ty1/copia_CL313 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Tcacao233_221 REXdb_ID3800 Ty1/copia_CL641 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 - - not tested Tcacao233_224 REXdb_ID3801 Ty1/copia_CL642 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Tcacao233_226_rc REXdb_ID6720 Ty3/gypsy_CL195 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTACCGGGGA (tRNA-Asp) - not tested Tcacao233_230_rc REXdb_ID12992 Ty3/gypsy_CL108 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Tcacao233_25 REXdb_ID5332 Ty1/copia_CL313 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Tcacao233_253_rc REXdb_ID12995 Ty3/gypsy_CL108 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATTAGAGCT (tRNA-Met) - not tested Tcacao233_264 REXdb_ID3803 Ty1/copia_CL641 (2) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Tcacao233_310 REXdb_ID13101 Ty3/gypsy_CL753 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 - - not tested Tcacao233_319_rc REXdb_ID6723 Ty3/gypsy_CL195 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCACCGTTGCCAGGGA (tRNA-Asp) - not tested Tcacao233_320 REXdb_ID1304 Ty1/copia_CL643 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCA (tRNA-Met) - not tested Tcacao233_321_rc REXdb_ID3804 Ty1/copia_CL644 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Tcacao233_326 REXdb_ID3805 Ty1/copia_CL644 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATTAGAGCC (tRNA-Met) - not tested Tcacao233_334_rc REXdb_ID1305 Ty1/copia_CL643 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAAAGCA (tRNA-Ile) - not tested Tcacao233_349 REXdb_ID7606 Ty3/gypsy_CL754 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGTGACTCCATTGGGGA (tRNA-Arg) - not tested Tcacao233_46_rc REXdb_ID11990 Ty3/gypsy_CL755 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Tcacao233_47_rc REXdb_ID5333 Ty1/copia_CL313 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGTT (tRNA-Met) - not tested Tcacao233_53_rc REXdb_ID12994 Ty3/gypsy_CL108 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 - - not tested Tcacao233_56_rc REXdb_ID6722 Ty3/gypsy_CL195 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 - - not tested Tcacao233_72_rc REXdb_ID12990 Ty3/gypsy_CL108 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 4 TGGATAAATAAA (tRNA-?) - not tested Tcacao233_73 REXdb_ID12996 Ty3/gypsy_CL108 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 - - not tested Tcacao233_78_rc REXdb_ID6721 Ty3/gypsy_CL195 (4) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCTGTTGCCGGGGAA (tRNA-Asp) - not tested Tcacao233_86_rc REXdb_ID7607 Ty3/gypsy_CL756 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGTGACTCCGT (tRNA-?) - not tested Tcacao233_91 REXdb_ID5334 Ty1/copia_CL313 (4) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Tekay_ZeaM_ID50 REXdb_ID13114 Ty3/gypsy_CL035 (46) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - + - not tested not tested not tested not tested ThelH1_ID77 REXdb_ID12047 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested TriA1_ID110 REXdb_ID12048 Ty3/gypsy_CL358 (2) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - not tested not tested not tested not tested Vcarteri199_102 REXdb_ID9789 Ty3/gypsy_CL148 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTATTGAGAT (tRNA-?) - not tested Vcarteri199_111_rc REXdb_ID13868 Ty3/gypsy_CL131 (7) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - + - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vcarteri199_113 REXdb_ID3863 Ty1/copia_CL314 (4) Class_I::LTR::Ty1/copia::Osser + + + + + - - - - - - - 5 - - GGTTATGAGCCCCG (tRNA-Met) Vcarteri199_152 REXdb_ID9807 Ty3/gypsy_CL196 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir - + + + + - + - - - not tested not tested 5 TGGTATCGGGAC (tRNA-?) - not tested Vcarteri199_156_rc REXdb_ID3864 Ty1/copia_CL314 (4) Class_I::LTR::Ty1/copia::Osser + + + + + - - - - - - - 4 - - GGTTATGAGCCCCG (tRNA-Met) Vcarteri199_157_rc REXdb_ID9811 Ty3/gypsy_CL255 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTATCGAGACCA (tRNA-Met) - not tested Vcarteri199_160_rc REXdb_ID3865 Ty1/copia_CL232 (5) Class_I::LTR::Ty1/copia::Osser + + + + + - - - - - - - 5 - - GGTTATGAGCCCCGCGC (tRNA-Met) Vcarteri199_165 REXdb_ID9792 Ty3/gypsy_CL148 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTATCGAGAC (tRNA-Met) - not tested Vcarteri199_170_rc REXdb_ID9812 Ty3/gypsy_CL255 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTATCGAGACCA (tRNA-Met) - not tested Vcarteri199_187_rc REXdb_ID9808 Ty3/gypsy_CL196 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGCATCGAGAC (tRNA-?) - not tested Vcarteri199_189_rc REXdb_ID9813 Ty3/gypsy_CL255 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir - + + + + - + - - - not tested not tested 4 TGGTATCGAGACCA (tRNA-Met) - not tested Vcarteri199_199_rc REXdb_ID9780 Ty3/gypsy_CL109 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTATCGACGA (tRNA-?) - not tested Vcarteri199_201 REXdb_ID9781 Ty3/gypsy_CL109 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTATCGACGA (tRNA-?) - not tested Vcarteri199_202 REXdb_ID3866 Ty1/copia_CL232 (5) Class_I::LTR::Ty1/copia::Osser + + + + + - - - - - - - 5 - - GGTTATGAGCCCCGCGC (tRNA-Met) Vcarteri199_204 REXdb_ID13871 Ty3/gypsy_CL131 (7) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - + - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vcarteri199_208_rc REXdb_ID9795 Ty3/gypsy_CL149 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir - + + + + - + - - - not tested not tested 5 TGGTATCTTAGA (tRNA-?) - not tested Vcarteri199_211 REXdb_ID3867 Ty1/copia_CL233 (5) Class_I::LTR::Ty1/copia::Osser + + + + + - - - - - - - 5 - - GGTTATGAGCCCCGCGC (tRNA-Met) Vcarteri199_212 REXdb_ID9786 Ty3/gypsy_CL109 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir - + + + + - + - - - not tested not tested 5 TGGTATCGAGCG (tRNA-?) - not tested Vcarteri199_214_rc REXdb_ID9814 Ty3/gypsy_CL256 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir - + + + + - + - - - not tested not tested 5 TGGTATCGAGAC (tRNA-Met) - not tested Vcarteri199_241 REXdb_ID3868 Ty1/copia_CL645 (2) Class_I::LTR::Ty1/copia::Osser + + + + + - - - - - - - 5 - - - Vcarteri199_243 REXdb_ID9782 Ty3/gypsy_CL109 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTATCGACGA (tRNA-?) - not tested Vcarteri199_265_rc REXdb_ID9793 Ty3/gypsy_CL148 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTATCGAGAC (tRNA-Met) - not tested Vcarteri199_267 REXdb_ID9816 Ty3/gypsy_CL256 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir - + + + + - + - - - not tested not tested 5 TGGTATCGAGAC (tRNA-Met) - not tested Vcarteri199_268_rc REXdb_ID3869 Ty1/copia_CL233 (5) Class_I::LTR::Ty1/copia::Osser + + + + + - - - - - - - 5 - - GGTTATGAGCCCCGCGC (tRNA-Met) Vcarteri199_272_rc REXdb_ID13870 Ty3/gypsy_CL131 (7) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - + - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vcarteri199_273_rc REXdb_ID9801 Ty3/gypsy_CL150 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 4 TGGTATCGAGAC (tRNA-Met) - not tested Vcarteri199_274_rc REXdb_ID9823 Ty3/gypsy_CL757 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTGCGAATTGCTA (tRNA-Phe) - not tested Vcarteri199_277_rc REXdb_ID13869 Ty3/gypsy_CL131 (7) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - + - - - - - 5 TGGTATCGAGACC (tRNA-Met) - not tested Vcarteri199_279 REXdb_ID9810 Ty3/gypsy_CL196 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir - + + + + - + - - - not tested not tested 5 TGGCATCGAGAC (tRNA-?) - not tested Vcarteri199_280 REXdb_ID9804 Ty3/gypsy_CL150 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir - + + + + - + - - - not tested not tested 5 TGGTATCGAGAC (tRNA-Met) - not tested Vcarteri199_282 REXdb_ID9798 Ty3/gypsy_CL149 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTATCTTAGA (tRNA-?) - not tested Vcarteri199_286_rc REXdb_ID9817 Ty3/gypsy_CL257 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir - + + + + - + - - - not tested not tested 5 TGGTGTCTCAGG (tRNA-Ile) - not tested Vcarteri199_291 REXdb_ID3870 Ty1/copia_CL314 (4) Class_I::LTR::Ty1/copia::Osser + + + + + - - - - - - - 5 - - GGTTATGAGCCCCG (tRNA-Met) Vcarteri199_294 REXdb_ID3871 Ty1/copia_CL645 (2) Class_I::LTR::Ty1/copia::Osser - + + + + - - - - - not tested not tested 5 - - GGTTATGAGCCCCG (tRNA-Met) Vcarteri199_296_rc REXdb_ID9794 Ty3/gypsy_CL148 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTATCGAGAC (tRNA-Met) - not tested Vcarteri199_298 REXdb_ID3872 Ty1/copia_CL232 (5) Class_I::LTR::Ty1/copia::Osser + + + + + - - - - - - - 5 - - GGTTATGAGCCCCGCGC (tRNA-Met) Vcarteri199_300 REXdb_ID9800 Ty3/gypsy_CL149 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTATCTTAGA (tRNA-?) - not tested Vcarteri199_302_rc REXdb_ID9802 Ty3/gypsy_CL150 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTATCGAGAC (tRNA-Met) - not tested Vcarteri199_306_rc REXdb_ID9806 Ty3/gypsy_CL150 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTATCGAGAC (tRNA-Met) - not tested Vcarteri199_307 REXdb_ID13872 Ty3/gypsy_CL131 (7) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass - + + + + - + - - - not tested not tested 5 TGGTATCGATCT (tRNA-?) - not tested Vcarteri199_308 REXdb_ID9820 Ty3/gypsy_CL359 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGGGTTACAGC (tRNA-?) - not tested Vcarteri199_334_rc REXdb_ID9788 Ty3/gypsy_CL109 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTATCGAGGG (tRNA-?) - not tested Vcarteri199_386_rc REXdb_ID9796 Ty3/gypsy_CL149 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTATCTTAGA (tRNA-?) - not tested Vcarteri199_387 REXdb_ID3873 Ty1/copia_CL233 (5) Class_I::LTR::Ty1/copia::Osser + + + + + - - - - - - - 5 - - GGTTATGAGCCCCGCGC (tRNA-Met) Vcarteri199_390 REXdb_ID9791 Ty3/gypsy_CL148 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTATCGAGAC (tRNA-Met) - not tested Vcarteri199_391_rc REXdb_ID3874 Ty1/copia_CL233 (5) Class_I::LTR::Ty1/copia::Osser + + + + + - - - - - - - 5 - - GGTTATGAGCCCCGCGC (tRNA-Met) Vcarteri199_396 REXdb_ID9784 Ty3/gypsy_CL109 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTATCGACGA (tRNA-?) - not tested Vcarteri199_4 REXdb_ID9783 Ty3/gypsy_CL109 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTATCGACGA (tRNA-?) - not tested Vcarteri199_403_rc REXdb_ID3875 Ty1/copia_CL232 (5) Class_I::LTR::Ty1/copia::Osser + + + + + - - - - - - - 5 - - GGTTATGAGCCCCGCGC (tRNA-Met) Vcarteri199_405_rc REXdb_ID9803 Ty3/gypsy_CL150 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTATCGAGAC (tRNA-Met) - not tested Vcarteri199_406 REXdb_ID9799 Ty3/gypsy_CL149 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTATCTTAGA (tRNA-?) - not tested Vcarteri199_408_rc REXdb_ID13874 Ty3/gypsy_CL131 (7) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass + + + + + - - - - - - - 5 TGGTATCGATCT (tRNA-?) - not tested Vcarteri199_413 REXdb_ID3876 Ty1/copia_CL233 (5) Class_I::LTR::Ty1/copia::Osser + + + + + - - - - - - - 5 - - GGTTATGAGCCCCGCGC (tRNA-Met) Vcarteri199_454 REXdb_ID9818 Ty3/gypsy_CL257 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTGTCTCAGG (tRNA-Ile) - not tested Vcarteri199_455_rc REXdb_ID9790 Ty3/gypsy_CL148 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTATCGAGAC (tRNA-Met) - not tested Vcarteri199_456 REXdb_ID3877 Ty1/copia_CL314 (4) Class_I::LTR::Ty1/copia::Osser + + + + + - - - - - - - 5 - - GGTTATGAGCCCCG (tRNA-Met) Vcarteri199_458_rc REXdb_ID9821 Ty3/gypsy_CL359 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGGGTTACAGC (tRNA-?) - not tested Vcarteri199_466_rc REXdb_ID9785 Ty3/gypsy_CL109 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTATCGAGGG (tRNA-?) - not tested Vcarteri199_469_rc REXdb_ID9819 Ty3/gypsy_CL257 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTGTCTCAGG (tRNA-Ile) - not tested Vcarteri199_5 REXdb_ID9805 Ty3/gypsy_CL150 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTATCGAGAC (tRNA-Met) - not tested Vcarteri199_6_rc REXdb_ID9787 Ty3/gypsy_CL109 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTATCGAGGG (tRNA-?) - not tested Vcarteri199_81_rc REXdb_ID9815 Ty3/gypsy_CL256 (3) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir - + + + + - + - - - not tested not tested 5 TGGTATCGAGAC (tRNA-Met) - not tested Vcarteri199_82 REXdb_ID9809 Ty3/gypsy_CL196 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGCATCGAGAC (tRNA-?) - not tested Vcarteri199_91 REXdb_ID3878 Ty1/copia_CL232 (5) Class_I::LTR::Ty1/copia::Osser + + + + + - - - - - - - 5 - - GGTTATGAGCCCCGCGC (tRNA-Met) Vcarteri199_93_rc REXdb_ID9797 Ty3/gypsy_CL149 (6) Class_I::LTR::Ty3/gypsy::chromovirus::Chlamyvir + + + + + - + - - - - - 5 TGGTATCTTAGA (tRNA-?) - not tested Vcarteri199_99_rc REXdb_ID13873 Ty3/gypsy_CL131 (7) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-unclass - + + + + - + - - - not tested not tested 5 TGGTATCGATCT (tRNA-?) - not tested VitV_ID211 REXdb_ID12330 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - not tested not tested not tested not tested VitV_ID214 REXdb_ID13115 Ty3/gypsy_CL162 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - not tested not tested not tested not tested VitV_ID215 REXdb_ID13824 Ty3/gypsy_CL760 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - - - - - - - not tested not tested not tested not tested VitV1_ID22 REXdb_ID12049 Ty3/gypsy_CL120 (8) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - not tested not tested not tested not tested VitV2_ID128 REXdb_ID12050 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - not tested not tested not tested not tested not tested not tested VitV3_ID124 REXdb_ID12051 Ty3/gypsy_CL758 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - not tested not tested not tested not tested VitV4_ID142 REXdb_ID12052 Ty3/gypsy_CL090 (11) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - not tested not tested not tested not tested VitV6_ID131 REXdb_ID12053 Ty3/gypsy_CL759 (1) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - - - - - - not tested not tested not tested not tested Vvinifera145_1 REXdb_ID1306 Ty1/copia_CL134 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_10_rc REXdb_ID1341 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1000 REXdb_ID8803 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTTTGT (tRNA-Lys) - not tested Vvinifera145_1001_rc REXdb_ID11859 Ty3/gypsy_CL120 (8) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 4 - - not tested Vvinifera145_1002_rc REXdb_ID7539 Ty3/gypsy_CL086 (12) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 4 - - not tested Vvinifera145_1004 REXdb_ID1307 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCCAA (tRNA-Met) - not tested Vvinifera145_1005_rc REXdb_ID4803 Ty1/copia_CL171 (6) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - - not tested Vvinifera145_1006_rc REXdb_ID1308 Ty1/copia_CL054 (17) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1008_rc REXdb_ID8827 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTGTCTGTGGGAA (tRNA-Undet) - not tested Vvinifera145_1009_rc REXdb_ID5335 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_101_rc REXdb_ID1313 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1010 REXdb_ID7546 Ty3/gypsy_CL086 (12) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCGCTGGGGA (tRNA-Arg) - not tested Vvinifera145_1011_rc REXdb_ID8845 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAAT (tRNA-Lys) - not tested Vvinifera145_1012_rc REXdb_ID1309 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_1013_rc REXdb_ID13013 Ty3/gypsy_CL132 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCTAAGTTTTGAT (tRNA-Ile) - not tested Vvinifera145_1014 REXdb_ID2597 Ty1/copia_CL037 (24) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 4 - - CGTTATCAGCACGAA (tRNA-Ile) Vvinifera145_1015_rc REXdb_ID1310 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1016_rc REXdb_ID8806 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + - - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Vvinifera145_1017_rc REXdb_ID1311 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1019_rc REXdb_ID1312 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_102 REXdb_ID8814 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCATCTGTGGGAA (tRNA-Lys) - not tested Vvinifera145_1020 REXdb_ID1314 Ty1/copia_CL087 (10) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATTAGAGCT (tRNA-Met) - not tested Vvinifera145_1022_rc REXdb_ID6273 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGAGGA (tRNA-Asp) - not tested Vvinifera145_1023 REXdb_ID5336 Ty1/copia_CL064 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_1026_rc REXdb_ID1315 Ty1/copia_CL087 (10) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 6 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_1029 REXdb_ID6336 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCTGGGGA (tRNA-Asp) - not tested Vvinifera145_103 REXdb_ID1316 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1032_rc REXdb_ID13236 Ty3/gypsy_CL097 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAGGTTA (tRNA-Met) - not tested Vvinifera145_1033 REXdb_ID6309 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1034_rc REXdb_ID1317 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1036_rc REXdb_ID1318 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1037 REXdb_ID1319 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1038 REXdb_ID8846 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Vvinifera145_104 REXdb_ID1320 Ty1/copia_CL067 (14) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCACGTTT (tRNA-Met) - not tested Vvinifera145_1042 REXdb_ID1321 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_1044 REXdb_ID8849 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Vvinifera145_1045 REXdb_ID1322 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_1047 REXdb_ID1323 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1048 REXdb_ID13347 Ty3/gypsy_CL163 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATTAGAGCA (tRNA-Met) - not tested Vvinifera145_105_rc REXdb_ID1327 Ty1/copia_CL083 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGTCA (tRNA-Met) - not tested Vvinifera145_1051_rc REXdb_ID1324 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1053 REXdb_ID1325 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1056 REXdb_ID1326 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_1058_rc REXdb_ID8809 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Vvinifera145_1059 REXdb_ID6405 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGAGGAT (tRNA-Asp) - not tested Vvinifera145_106 REXdb_ID5337 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGCAGAGGAAA (tRNA-Ser) - not tested Vvinifera145_1060_rc REXdb_ID13235 Ty3/gypsy_CL097 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAGGTTA (tRNA-Met) - not tested Vvinifera145_1062_rc REXdb_ID8805 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCACCGTCTG (tRNA-Lys) - not tested Vvinifera145_1064 REXdb_ID13351 Ty3/gypsy_CL163 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1066 REXdb_ID1328 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCCAA (tRNA-Met) - not tested Vvinifera145_1069_rc REXdb_ID1329 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_107 REXdb_ID2598 Ty1/copia_CL037 (24) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAA (tRNA-Ile) Vvinifera145_1072_rc REXdb_ID1330 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1073_rc REXdb_ID1331 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1074 REXdb_ID1332 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1078 REXdb_ID5338 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_1080 REXdb_ID1333 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1081 REXdb_ID1334 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1085_rc REXdb_ID1335 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1086_rc REXdb_ID1336 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1087_rc REXdb_ID1337 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_109_rc REXdb_ID1340 Ty1/copia_CL083 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Vvinifera145_1090_rc REXdb_ID8819 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTTGGGAATC (tRNA-Undet) - not tested Vvinifera145_1095_rc REXdb_ID13290 Ty3/gypsy_CL122 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Vvinifera145_1096_rc REXdb_ID8820 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Vvinifera145_1098 REXdb_ID1338 Ty1/copia_CL134 (7) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Vvinifera145_1099 REXdb_ID1339 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_11 REXdb_ID1342 Ty1/copia_CL433 (3) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 4 TGGTATCAGAGCTAG (tRNA-Met) - not tested Vvinifera145_1102_rc REXdb_ID5339 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_1106_rc REXdb_ID2952 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTGTTAGTTG (tRNA-Leu) - not tested Vvinifera145_1107 REXdb_ID3806 Ty1/copia_CL052 (18) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Vvinifera145_1108 REXdb_ID8850 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAAT (tRNA-Lys) - not tested Vvinifera145_111 REXdb_ID1343 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCCAAG (tRNA-Met) - not tested Vvinifera145_1113 REXdb_ID6402 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_1115_rc REXdb_ID6434 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGTCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1116 REXdb_ID12219 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGC (tRNA-Met) - not tested Vvinifera145_1117 REXdb_ID6424 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 - - not tested Vvinifera145_1118 REXdb_ID6373 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 6 - - not tested Vvinifera145_1123_rc REXdb_ID1344 Ty1/copia_CL082 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAGGTT (tRNA-Met) - not tested Vvinifera145_1125 REXdb_ID6406 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_1129_rc REXdb_ID8875 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Vvinifera145_113 REXdb_ID13017 Ty3/gypsy_CL132 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCTAGGTTTTGAT (tRNA-Met) - not tested Vvinifera145_1135 REXdb_ID6382 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_1139 REXdb_ID7542 Ty3/gypsy_CL086 (12) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 - - not tested Vvinifera145_1140_rc REXdb_ID2599 Ty1/copia_CL037 (24) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAACAC (tRNA-Ile) Vvinifera145_1142 REXdb_ID1345 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1143 REXdb_ID11864 Ty3/gypsy_CL120 (8) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGCATCAGAGCC (tRNA-Met) - not tested Vvinifera145_1144_rc REXdb_ID4599 Ty1/copia_CL146 (7) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCTAGA (tRNA-Met) - not tested Vvinifera145_1153_rc REXdb_ID1346 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1162 REXdb_ID1347 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1163_rc REXdb_ID5340 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTGGTTT (tRNA-Met) - not tested Vvinifera145_1168 REXdb_ID1815 Ty1/copia_CL053 (17) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTT (tRNA-Met) - not tested Vvinifera145_1169 REXdb_ID1348 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1170_rc REXdb_ID1349 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1171 REXdb_ID5341 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 - - not tested Vvinifera145_1172 REXdb_ID6415 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_1175 REXdb_ID1350 Ty1/copia_CL054 (17) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 4 TGGTATCAGAGCG (tRNA-Met) - not tested Vvinifera145_1176_rc REXdb_ID1351 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1178_rc REXdb_ID1352 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAGTA (tRNA-Met) - not tested Vvinifera145_118_rc REXdb_ID1355 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1181_rc REXdb_ID1353 Ty1/copia_CL082 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAGGTT (tRNA-Met) - not tested Vvinifera145_1185 REXdb_ID2953 Ty1/copia_CL041 (22) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAAAGCAAGGTT (tRNA-Ile) - not tested Vvinifera145_1188_rc REXdb_ID1354 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_119 REXdb_ID1356 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1190 REXdb_ID1357 Ty1/copia_CL067 (14) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Vvinifera145_1194_rc REXdb_ID1358 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1196 REXdb_ID1359 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_12 REXdb_ID2954 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Vvinifera145_120_rc REXdb_ID1360 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_1201_rc REXdb_ID6298 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1203 REXdb_ID6299 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCTGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_121_rc REXdb_ID1361 Ty1/copia_CL234 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_1210 REXdb_ID2955 Ty1/copia_CL072 (13) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCAAGGTT (tRNA-Met) - not tested Vvinifera145_1219_rc REXdb_ID6308 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_122 REXdb_ID1362 Ty1/copia_CL054 (17) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Vvinifera145_1221 REXdb_ID1363 Ty1/copia_CL178 (6) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Vvinifera145_1223 REXdb_ID6279 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAATGA (tRNA-Asp) - not tested Vvinifera145_1225_rc REXdb_ID3807 Ty1/copia_CL315 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Vvinifera145_1227 REXdb_ID1364 Ty1/copia_CL179 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGT (tRNA-Met) - not tested Vvinifera145_1229_rc REXdb_ID1365 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_123_rc REXdb_ID1368 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_1231 REXdb_ID1366 Ty1/copia_CL045 (22) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1232_rc REXdb_ID1367 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1234_rc REXdb_ID8859 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAATA (tRNA-Asp) - not tested Vvinifera145_1235 REXdb_ID8860 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Vvinifera145_1236 REXdb_ID8851 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Vvinifera145_1239 REXdb_ID13578 Ty3/gypsy_CL360 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCAT (tRNA-Thr) - not tested Vvinifera145_124_rc REXdb_ID1369 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1240_rc REXdb_ID2600 Ty1/copia_CL037 (24) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACCA (tRNA-Ile) Vvinifera145_1245_rc REXdb_ID8830 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Vvinifera145_1247_rc REXdb_ID8807 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTTGGGAATC (tRNA-Undet) - not tested Vvinifera145_1249 REXdb_ID13187 Ty3/gypsy_CL070 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_1251_rc REXdb_ID2956 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Vvinifera145_1252_rc REXdb_ID1370 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1254_rc REXdb_ID5342 Ty1/copia_CL434 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_1255 REXdb_ID1371 Ty1/copia_CL045 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Vvinifera145_1256 REXdb_ID3808 Ty1/copia_CL172 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTAGATT (tRNA-Met) - not tested Vvinifera145_1257_rc REXdb_ID8852 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAAT (tRNA-Lys) - not tested Vvinifera145_1259 REXdb_ID1372 Ty1/copia_CL435 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Vvinifera145_1260 REXdb_ID1373 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1262_rc REXdb_ID1374 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1264_rc REXdb_ID1375 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_1265 REXdb_ID2957 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Vvinifera145_1266 REXdb_ID2958 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1267 REXdb_ID1376 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_127_rc REXdb_ID1380 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1271_rc REXdb_ID1377 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1275 REXdb_ID1378 Ty1/copia_CL235 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1276_rc REXdb_ID6322 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGTCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1277_rc REXdb_ID6431 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGAAT (tRNA-Asp) - not tested Vvinifera145_1278_rc REXdb_ID6332 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCGTTGCCAGGGA (tRNA-Asp) - not tested Vvinifera145_1279_rc REXdb_ID1379 Ty1/copia_CL058 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1280 REXdb_ID6286 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 4 TGGCGCCGTTGCCGGGGAATGA (tRNA-Asp) - not tested Vvinifera145_1288 REXdb_ID2344 Ty1/copia_CL554 (2) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTTA (tRNA-Met) - not tested Vvinifera145_1289 REXdb_ID6314 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGTGCCATTGCC (tRNA-Asp) - not tested Vvinifera145_129 REXdb_ID1381 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1290_rc REXdb_ID6370 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1296_rc REXdb_ID6300 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCATTGCCGGG (tRNA-Asp) - not tested Vvinifera145_1298 REXdb_ID6433 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCACCGTTGCCAGGGA (tRNA-Asp) - not tested Vvinifera145_1303_rc REXdb_ID6429 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1309 REXdb_ID3809 Ty1/copia_CL315 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAAGCC (tRNA-Met) - not tested Vvinifera145_1310 REXdb_ID3810 Ty1/copia_CL158 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Vvinifera145_1312 REXdb_ID6422 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCATTGCCGGGGA (tRNA-Asp) - not tested Vvinifera145_1314_rc REXdb_ID1382 Ty1/copia_CL045 (22) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1318 REXdb_ID6367 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_132_rc REXdb_ID3812 Ty1/copia_CL147 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1321 REXdb_ID3811 Ty1/copia_CL646 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTAGAGAGAGAG (tRNA-Ser) - not tested Vvinifera145_1322_rc REXdb_ID2959 Ty1/copia_CL236 (5) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATTAGAGCGAG (tRNA-Met) - not tested Vvinifera145_1325_rc REXdb_ID2601 Ty1/copia_CL037 (24) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAACAC (tRNA-Ile) Vvinifera145_1326 REXdb_ID5343 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1327 REXdb_ID6338 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_133_rc REXdb_ID1384 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1331 REXdb_ID8861 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Vvinifera145_1333_rc REXdb_ID1383 Ty1/copia_CL067 (14) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCCACGTTT (tRNA-Met) - not tested Vvinifera145_1335_rc REXdb_ID13193 Ty3/gypsy_CL070 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_1341_rc REXdb_ID1385 Ty1/copia_CL647 (2) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 4 TGGTATCAGAGCTA (tRNA-Met) - not tested Vvinifera145_1343 REXdb_ID1386 Ty1/copia_CL045 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1345 REXdb_ID6281 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCTGGGGA (tRNA-Asp) - not tested Vvinifera145_1346_rc REXdb_ID1387 Ty1/copia_CL316 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Vvinifera145_135 REXdb_ID1388 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAGA (tRNA-Met) - not tested Vvinifera145_1350_rc REXdb_ID12236 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCG (tRNA-Met) - not tested Vvinifera145_1351 REXdb_ID2345 Ty1/copia_CL237 (5) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Vvinifera145_1352 REXdb_ID1389 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_1354_rc REXdb_ID2960 Ty1/copia_CL072 (13) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAAAGCAAGGTT (tRNA-Ile) - not tested Vvinifera145_1355_rc REXdb_ID1390 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Vvinifera145_1359 REXdb_ID1391 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_136 REXdb_ID1392 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGATCC (tRNA-Met) - not tested Vvinifera145_1361 REXdb_ID1393 Ty1/copia_CL045 (22) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1363 REXdb_ID1394 Ty1/copia_CL045 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1366_rc REXdb_ID6282 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAATGA (tRNA-Asp) - not tested Vvinifera145_1368 REXdb_ID1395 Ty1/copia_CL083 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Vvinifera145_137 REXdb_ID8821 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Vvinifera145_1370_rc REXdb_ID3813 Ty1/copia_CL147 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Vvinifera145_1371_rc REXdb_ID2346 Ty1/copia_CL237 (5) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Vvinifera145_1372_rc REXdb_ID8888 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Vvinifera145_1373_rc REXdb_ID2961 Ty1/copia_CL072 (13) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCAAGGTT (tRNA-Met) - not tested Vvinifera145_1375_rc REXdb_ID1396 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_1378 REXdb_ID2602 Ty1/copia_CL037 (24) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAA (tRNA-Ile) Vvinifera145_1379_rc REXdb_ID13396 Ty3/gypsy_CL197 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_138 REXdb_ID1816 Ty1/copia_CL053 (17) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTATCAGAGCCAAGTT (tRNA-Met) - not tested Vvinifera145_1383 REXdb_ID1397 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAAAGCCAAG (tRNA-Met) - not tested Vvinifera145_1384_rc REXdb_ID1398 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1387_rc REXdb_ID8856 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGACGTCTGTGG (tRNA-Lys) - not tested Vvinifera145_1388 REXdb_ID1399 Ty1/copia_CL082 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAGGTT (tRNA-Met) - not tested Vvinifera145_1389 REXdb_ID1400 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_1392_rc REXdb_ID12225 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCG (tRNA-Met) - not tested Vvinifera145_1393_rc REXdb_ID1401 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1394 REXdb_ID1402 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1395_rc REXdb_ID1403 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1397_rc REXdb_ID1404 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1398 REXdb_ID8831 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTATGGGAA (tRNA-Lys) - not tested Vvinifera145_14 REXdb_ID5344 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_1400_rc REXdb_ID8864 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAAT (tRNA-Lys) - not tested Vvinifera145_1401 REXdb_ID1405 Ty1/copia_CL648 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_1402 REXdb_ID6349 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1404 REXdb_ID13015 Ty3/gypsy_CL132 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAAG (tRNA-Leu) - not tested Vvinifera145_1405 REXdb_ID13270 Ty3/gypsy_CL101 (9) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAGGT (tRNA-Met) - not tested Vvinifera145_1407_rc REXdb_ID6419 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGTCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_141_rc REXdb_ID1406 Ty1/copia_CL083 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Vvinifera145_1410 REXdb_ID6436 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCGTTACCGGGGAT (tRNA-Asp) - not tested Vvinifera145_1413 REXdb_ID6388 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_1416_rc REXdb_ID6420 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_1418 REXdb_ID4600 Ty1/copia_CL146 (7) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCTAGA (tRNA-Met) - not tested Vvinifera145_142_rc REXdb_ID6290 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAATGA (tRNA-Asp) - not tested Vvinifera145_1420 REXdb_ID6356 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1424_rc REXdb_ID6413 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_143 REXdb_ID1407 Ty1/copia_CL045 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1430 REXdb_ID6304 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1432 REXdb_ID6307 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + + - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1433 REXdb_ID6339 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1437 REXdb_ID6362 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGTCATTGCTGGGGA (tRNA-Asp) - not tested Vvinifera145_1438 REXdb_ID1408 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1439_rc REXdb_ID1409 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGTCT (tRNA-Met) - not tested Vvinifera145_1440_rc REXdb_ID1410 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATTAGAGT (tRNA-?) - not tested Vvinifera145_1441 REXdb_ID2962 Ty1/copia_CL072 (13) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCAAGGTT (tRNA-Met) - not tested Vvinifera145_1442_rc REXdb_ID8841 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTGTCTGTGGGAA (tRNA-Undet) - not tested Vvinifera145_1443 REXdb_ID6385 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_1444 REXdb_ID1411 Ty1/copia_CL036 (24) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1445 REXdb_ID3814 Ty1/copia_CL394 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAAGGTT (tRNA-Met) - not tested Vvinifera145_1450 REXdb_ID1412 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1451 REXdb_ID6389 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_1452_rc REXdb_ID1413 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1453 REXdb_ID6416 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_1454_rc REXdb_ID6277 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1458_rc REXdb_ID1414 Ty1/copia_CL036 (24) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1460 REXdb_ID1415 Ty1/copia_CL648 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_1463 REXdb_ID1416 Ty1/copia_CL433 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGTTAG (tRNA-Met) - not tested Vvinifera145_1464 REXdb_ID6333 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1465 REXdb_ID1417 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1467_rc REXdb_ID5345 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_1468 REXdb_ID3815 Ty1/copia_CL315 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Vvinifera145_147_rc REXdb_ID1420 Ty1/copia_CL083 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGTCA (tRNA-Met) - not tested Vvinifera145_1470 REXdb_ID1418 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1471 REXdb_ID2347 Ty1/copia_CL237 (5) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Vvinifera145_1474_rc REXdb_ID1419 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1477_rc REXdb_ID6310 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCTGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_148_rc REXdb_ID1426 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_1480_rc REXdb_ID1421 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_1481_rc REXdb_ID1422 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1483 REXdb_ID1423 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1484 REXdb_ID3816 Ty1/copia_CL147 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1485 REXdb_ID1424 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1486_rc REXdb_ID1425 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1487_rc REXdb_ID8882 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGAGCCGTCTG (tRNA-?) - not tested Vvinifera145_149_rc REXdb_ID5347 Ty1/copia_CL064 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 4 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_1491_rc REXdb_ID1427 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1493_rc REXdb_ID1428 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Vvinifera145_1494_rc REXdb_ID8810 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Vvinifera145_1497 REXdb_ID8832 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 - - not tested Vvinifera145_1499 REXdb_ID5346 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_1501_rc REXdb_ID6312 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1504 REXdb_ID1429 Ty1/copia_CL316 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1506_rc REXdb_ID13289 Ty3/gypsy_CL122 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Vvinifera145_1507 REXdb_ID1430 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAGA (tRNA-Met) - not tested Vvinifera145_1509_rc REXdb_ID1431 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1516_rc REXdb_ID1432 Ty1/copia_CL045 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1519_rc REXdb_ID8876 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - not tested not tested - - 5 TGGCGCTGTCTGTGGGAA (tRNA-Undet) - not tested Vvinifera145_152 REXdb_ID8855 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Vvinifera145_1520_rc REXdb_ID1433 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1522_rc REXdb_ID1434 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1523 REXdb_ID1435 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1524_rc REXdb_ID6371 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_1526 REXdb_ID6411 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_1528 REXdb_ID8879 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTATGGGAA (tRNA-Lys) - not tested Vvinifera145_153_rc REXdb_ID1436 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1533 REXdb_ID6276 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGTGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1534 REXdb_ID6380 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_1535 REXdb_ID6274 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_154_rc REXdb_ID1437 Ty1/copia_CL235 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1540 REXdb_ID6325 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCGCTGC (tRNA-?) - not tested Vvinifera145_1548_rc REXdb_ID13048 Ty3/gypsy_CL162 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1549 REXdb_ID3817 Ty1/copia_CL315 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Vvinifera145_1554_rc REXdb_ID6396 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_1560 REXdb_ID1817 Ty1/copia_CL053 (17) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTATCAGAGCTAGGTT (tRNA-Met) - not tested Vvinifera145_1561 REXdb_ID7549 Ty3/gypsy_CL086 (12) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCGCTGGGGATCGAA (tRNA-Arg) - not tested Vvinifera145_1563_rc REXdb_ID2963 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Vvinifera145_1565 REXdb_ID1438 Ty1/copia_CL058 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Vvinifera145_1567_rc REXdb_ID1439 Ty1/copia_CL036 (24) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1568_rc REXdb_ID8868 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Vvinifera145_157 REXdb_ID1440 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Vvinifera145_1570 REXdb_ID6397 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_1572_rc REXdb_ID6360 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCTGCTGC (tRNA-?) - not tested Vvinifera145_1574_rc REXdb_ID6340 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGTCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1577_rc REXdb_ID2603 Ty1/copia_CL037 (24) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAA (tRNA-Ile) Vvinifera145_1578 REXdb_ID1441 Ty1/copia_CL179 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Vvinifera145_158 REXdb_ID1442 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1580 REXdb_ID2964 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Vvinifera145_1582 REXdb_ID1443 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1583_rc REXdb_ID1444 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAGG (tRNA-Met) - not tested Vvinifera145_1584 REXdb_ID2604 Ty1/copia_CL037 (24) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 6 - - CGTTATCAGCACGAA (tRNA-Ile) Vvinifera145_1594 REXdb_ID5348 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 6 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_1595_rc REXdb_ID1445 Ty1/copia_CL707 (1) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1597 REXdb_ID5349 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_1598 REXdb_ID1446 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_160 REXdb_ID1447 Ty1/copia_CL179 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Vvinifera145_1600_rc REXdb_ID1448 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCG (tRNA-Met) - not tested Vvinifera145_1603 REXdb_ID2965 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Vvinifera145_1604_rc REXdb_ID8873 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Vvinifera145_1605 REXdb_ID1449 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1606_rc REXdb_ID1450 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_161 REXdb_ID1451 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1612_rc REXdb_ID6383 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_1615_rc REXdb_ID13018 Ty3/gypsy_CL132 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCTAGGTTTTGAT (tRNA-Met) - not tested Vvinifera145_1619 REXdb_ID13292 Ty3/gypsy_CL122 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Vvinifera145_162_rc REXdb_ID1455 Ty1/copia_CL083 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Vvinifera145_1621 REXdb_ID1452 Ty1/copia_CL217 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1623 REXdb_ID1453 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1624 REXdb_ID13050 Ty3/gypsy_CL162 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCTAGGTT (tRNA-Met) - not tested Vvinifera145_1626_rc REXdb_ID1454 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGAGCCA (tRNA-Met) - not tested Vvinifera145_1627_rc REXdb_ID6287 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_1628_rc REXdb_ID6305 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1631 REXdb_ID6423 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 - - not tested Vvinifera145_1633 REXdb_ID6350 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 - - not tested Vvinifera145_1634 REXdb_ID6372 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_1635 REXdb_ID1456 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_164 REXdb_ID2966 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Vvinifera145_1641_rc REXdb_ID1457 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1643 REXdb_ID1458 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Vvinifera145_1645_rc REXdb_ID1459 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAACCAG (tRNA-Met) - not tested Vvinifera145_1646_rc REXdb_ID1460 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Vvinifera145_1647_rc REXdb_ID1461 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_1648_rc REXdb_ID1462 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_1649_rc REXdb_ID1463 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1652 REXdb_ID1464 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1653_rc REXdb_ID1465 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1656 REXdb_ID3818 Ty1/copia_CL649 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Vvinifera145_1657_rc REXdb_ID1466 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1659 REXdb_ID8818 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Vvinifera145_1660 REXdb_ID6328 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1661 REXdb_ID12223 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGC (tRNA-Met) - not tested Vvinifera145_1662 REXdb_ID1467 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGTCAA (tRNA-Met) - not tested Vvinifera145_1663_rc REXdb_ID1468 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 5 TGGTATCCGAGC (tRNA-?) - not tested Vvinifera145_1666_rc REXdb_ID1469 Ty1/copia_CL650 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Vvinifera145_1667_rc REXdb_ID1470 Ty1/copia_CL436 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCT (tRNA-Met) - not tested Vvinifera145_1672_rc REXdb_ID1471 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCCAG (tRNA-Met) - not tested Vvinifera145_1673_rc REXdb_ID1472 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1675 REXdb_ID1473 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1677 REXdb_ID5350 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_1678 REXdb_ID1474 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_1680 REXdb_ID4601 Ty1/copia_CL146 (7) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCTAGA (tRNA-Met) - not tested Vvinifera145_1681 REXdb_ID1475 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1683_rc REXdb_ID8866 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGAAAT (tRNA-Lys) - not tested Vvinifera145_1684_rc REXdb_ID1476 Ty1/copia_CL316 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Vvinifera145_1685 REXdb_ID8815 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Vvinifera145_1687_rc REXdb_ID7540 Ty3/gypsy_CL086 (12) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 4 - - not tested Vvinifera145_1688_rc REXdb_ID2967 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1689 REXdb_ID1477 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_169_rc REXdb_ID12245 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 - - not tested Vvinifera145_1690 REXdb_ID1478 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_1691 REXdb_ID1479 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCCAAG (tRNA-Met) - not tested Vvinifera145_1694 REXdb_ID12224 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGC (tRNA-Met) - not tested Vvinifera145_1695_rc REXdb_ID1480 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1696 REXdb_ID11865 Ty3/gypsy_CL120 (8) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_1697 REXdb_ID1481 Ty1/copia_CL235 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1698 REXdb_ID8887 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Vvinifera145_1700_rc REXdb_ID1482 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1702 REXdb_ID2348 Ty1/copia_CL237 (5) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAAAGCCATGT (tRNA-Met) - not tested Vvinifera145_1703 REXdb_ID6770 Ty3/gypsy_CL761 (1) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCGCTGTCGGGGAT (tRNA-Asp) - not tested Vvinifera145_1704_rc REXdb_ID1483 Ty1/copia_CL045 (22) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1705 REXdb_ID1484 Ty1/copia_CL054 (17) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Vvinifera145_1706 REXdb_ID1485 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_1707 REXdb_ID12234 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCG (tRNA-Met) - not tested Vvinifera145_1709_rc REXdb_ID1486 Ty1/copia_CL067 (14) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCCA (tRNA-Met) - not tested Vvinifera145_1713 REXdb_ID1487 Ty1/copia_CL054 (17) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1715 REXdb_ID2968 Ty1/copia_CL041 (22) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCAAGGTT (tRNA-Met) - not tested Vvinifera145_1716_rc REXdb_ID8817 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Vvinifera145_172_rc REXdb_ID8835 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAATC (tRNA-Lys) - not tested Vvinifera145_1720 REXdb_ID8811 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Vvinifera145_1721 REXdb_ID13580 Ty3/gypsy_CL361 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGCTGAGGGTG (tRNA-Leu) - not tested Vvinifera145_1722 REXdb_ID8870 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAAT (tRNA-Lys) - not tested Vvinifera145_1723_rc REXdb_ID1488 Ty1/copia_CL045 (22) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1724 REXdb_ID1489 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1726_rc REXdb_ID1490 Ty1/copia_CL054 (17) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Vvinifera145_1730 REXdb_ID6280 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAATGAA (tRNA-Asp) - not tested Vvinifera145_1732 REXdb_ID1491 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_1735 REXdb_ID7547 Ty3/gypsy_CL086 (12) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCGCTGGGGA (tRNA-Arg) - not tested Vvinifera145_1736 REXdb_ID1492 Ty1/copia_CL054 (17) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1740_rc REXdb_ID1493 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1742_rc REXdb_ID13014 Ty3/gypsy_CL132 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1746_rc REXdb_ID5351 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_1749_rc REXdb_ID6409 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_1750_rc REXdb_ID13291 Ty3/gypsy_CL122 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Vvinifera145_1751 REXdb_ID6342 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1753 REXdb_ID1494 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_1754_rc REXdb_ID6384 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_1756 REXdb_ID4804 Ty1/copia_CL180 (6) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CAAAGACTCTATT not tested Vvinifera145_176 REXdb_ID6432 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGAGGA (tRNA-Asp) - not tested Vvinifera145_1760 REXdb_ID6390 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_1762_rc REXdb_ID6358 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1765_rc REXdb_ID6437 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1767 REXdb_ID6392 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_1769 REXdb_ID6425 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_1771 REXdb_ID13049 Ty3/gypsy_CL162 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1774 REXdb_ID1495 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCCAAG (tRNA-Met) - not tested Vvinifera145_1777_rc REXdb_ID8808 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Vvinifera145_1778_rc REXdb_ID6417 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCTGGGGAT (tRNA-Asp) - not tested Vvinifera145_1783 REXdb_ID7548 Ty3/gypsy_CL086 (12) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGTGACTCCGC (tRNA-?) - not tested Vvinifera145_1784_rc REXdb_ID1496 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1785_rc REXdb_ID1497 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_1786 REXdb_ID1498 Ty1/copia_CL036 (24) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1787_rc REXdb_ID2969 Ty1/copia_CL437 (3) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 4 TGGTATCAGAGCAAG (tRNA-Met) - not tested Vvinifera145_1791_rc REXdb_ID1500 Ty1/copia_CL651 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_1792_rc REXdb_ID1501 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_1793 REXdb_ID6374 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_1795 REXdb_ID1502 Ty1/copia_CL045 (22) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATTAGAGCA (tRNA-Met) - not tested Vvinifera145_180 REXdb_ID12233 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCGAGG (tRNA-Met) - not tested Vvinifera145_1800_rc REXdb_ID1503 Ty1/copia_CL438 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCGA (tRNA-Met) - not tested Vvinifera145_1802 REXdb_ID4602 Ty1/copia_CL146 (7) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCTAGA (tRNA-Met) - not tested Vvinifera145_1803 REXdb_ID1504 Ty1/copia_CL178 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAGCTTT (tRNA-Met) - not tested Vvinifera145_1806 REXdb_ID12238 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCG (tRNA-Met) - not tested Vvinifera145_1807 REXdb_ID1505 Ty1/copia_CL234 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Vvinifera145_1808_rc REXdb_ID1506 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_181_rc REXdb_ID2970 Ty1/copia_CL236 (5) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCTG (tRNA-Met) - not tested Vvinifera145_1810 REXdb_ID8822 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCACCGTCTGTGGGAA (tRNA-Lys) - not tested Vvinifera145_1811_rc REXdb_ID1507 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCCAA (tRNA-Met) - not tested Vvinifera145_1814 REXdb_ID3819 Ty1/copia_CL158 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAGC (tRNA-Met) - not tested Vvinifera145_1815_rc REXdb_ID13581 Ty3/gypsy_CL361 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - - - - - - - 5 TGGCTGAGGGTG (tRNA-Leu) - not tested Vvinifera145_1816_rc REXdb_ID1508 Ty1/copia_CL067 (14) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCACGTTT (tRNA-Met) - not tested Vvinifera145_1821_rc REXdb_ID1509 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Vvinifera145_1823 REXdb_ID1510 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1826 REXdb_ID13237 Ty3/gypsy_CL097 (10) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAAGTT (tRNA-Met) - not tested Vvinifera145_1828_rc REXdb_ID1511 Ty1/copia_CL045 (22) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1830_rc REXdb_ID2971 Ty1/copia_CL236 (5) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATTAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1831_rc REXdb_ID3820 Ty1/copia_CL147 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1841 REXdb_ID1512 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Vvinifera145_1842_rc REXdb_ID5352 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_1844 REXdb_ID1513 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_1846_rc REXdb_ID12240 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGC (tRNA-Met) - not tested Vvinifera145_1848 REXdb_ID13019 Ty3/gypsy_CL132 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 - - not tested Vvinifera145_1850_rc REXdb_ID4805 Ty1/copia_CL180 (6) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CAAAGACTCTATTTC not tested Vvinifera145_1852_rc REXdb_ID1514 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1857_rc REXdb_ID1515 Ty1/copia_CL234 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_1858_rc REXdb_ID1516 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 5 TGGTATTAAAGC (tRNA-Met) - not tested Vvinifera145_186 REXdb_ID1517 Ty1/copia_CL438 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Vvinifera145_1865 REXdb_ID1518 Ty1/copia_CL058 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1866_rc REXdb_ID8853 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Vvinifera145_187 REXdb_ID5353 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_1872 REXdb_ID1519 Ty1/copia_CL436 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_1873 REXdb_ID1520 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_1875_rc REXdb_ID1521 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1876_rc REXdb_ID1522 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_1877_rc REXdb_ID1523 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_1878 REXdb_ID5354 Ty1/copia_CL064 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1881 REXdb_ID1524 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1882_rc REXdb_ID6311 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1891 REXdb_ID6297 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGTCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1895_rc REXdb_ID2972 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Vvinifera145_1898 REXdb_ID8858 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Vvinifera145_19_rc REXdb_ID1540 Ty1/copia_CL235 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1900_rc REXdb_ID6318 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCGTTGCTGGGGA (tRNA-Asp) - not tested Vvinifera145_1903_rc REXdb_ID1525 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1905_rc REXdb_ID2973 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_1906 REXdb_ID8812 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTTGGGAATC (tRNA-Undet) - not tested Vvinifera145_1907 REXdb_ID12235 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel - + + + + - + - - - not tested not tested 4 TGGTATCAGAGCG (tRNA-Met) - not tested Vvinifera145_1913 REXdb_ID1526 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Vvinifera145_1917 REXdb_ID2974 Ty1/copia_CL072 (13) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCAAGGTTTTGA (tRNA-Met) - not tested Vvinifera145_192 REXdb_ID6366 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1921_rc REXdb_ID1527 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1929 REXdb_ID2605 Ty1/copia_CL037 (24) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - TTATCAGCACGA (tRNA-Ile) Vvinifera145_193_rc REXdb_ID6399 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_1930_rc REXdb_ID6319 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGTGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1935_rc REXdb_ID1528 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_1937_rc REXdb_ID1529 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1938 REXdb_ID11862 Ty3/gypsy_CL120 (8) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAACCAA (tRNA-Met) - not tested Vvinifera145_1940_rc REXdb_ID1530 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_1942 REXdb_ID1531 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_1943_rc REXdb_ID4806 Ty1/copia_CL097 (9) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAAACAGATT not tested Vvinifera145_1945 REXdb_ID1532 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_1946_rc REXdb_ID5355 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_1948_rc REXdb_ID3821 Ty1/copia_CL052 (18) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAAGCA (tRNA-Ile) - not tested Vvinifera145_1950 REXdb_ID1533 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1951 REXdb_ID6293 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAATGA (tRNA-Asp) - not tested Vvinifera145_1953_rc REXdb_ID3822 Ty1/copia_CL052 (18) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 4 - - not tested Vvinifera145_1954_rc REXdb_ID2975 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1957 REXdb_ID6291 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAATGA (tRNA-Asp) - not tested Vvinifera145_1958 REXdb_ID3823 Ty1/copia_CL158 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAAAGCCAG (tRNA-Met) - not tested Vvinifera145_1960_rc REXdb_ID1534 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Vvinifera145_1961_rc REXdb_ID1535 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_1964 REXdb_ID1536 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Vvinifera145_1969_rc REXdb_ID1537 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGTCT (tRNA-Met) - not tested Vvinifera145_1975 REXdb_ID1538 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1977_rc REXdb_ID1539 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_1978_rc REXdb_ID2976 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 6 TGGTATCAAAGT (tRNA-Met) - not tested Vvinifera145_1979_rc REXdb_ID4603 Ty1/copia_CL708 (1) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Vvinifera145_1983 REXdb_ID6316 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1985 REXdb_ID5356 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATTAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_1986 REXdb_ID4604 Ty1/copia_CL146 (7) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATTAGAGT (tRNA-?) - not tested Vvinifera145_1988 REXdb_ID12324 Ty3/gypsy_CL762 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGATC (tRNA-?) - not tested Vvinifera145_199_rc REXdb_ID6295 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1992 REXdb_ID6334 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGAA (tRNA-Asp) - not tested Vvinifera145_1994_rc REXdb_ID6430 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_1996_rc REXdb_ID6351 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTGC (tRNA-Asp) - not tested Vvinifera145_1999_rc REXdb_ID6347 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 - - not tested Vvinifera145_2_rc REXdb_ID3827 Ty1/copia_CL147 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_20_rc REXdb_ID1561 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_200 REXdb_ID1541 Ty1/copia_CL647 (2) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 4 TGGTATTAGAGCCA (tRNA-Met) - not tested Vvinifera145_2001_rc REXdb_ID4807 Ty1/copia_CL180 (6) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 TGGAAAGAGAGA (tRNA-Ser) CAAAGACTCTATT not tested Vvinifera145_2005 REXdb_ID6359 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCTGATTC (tRNA-?) - not tested Vvinifera145_2007 REXdb_ID12232 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCG (tRNA-Met) - not tested Vvinifera145_201_rc REXdb_ID3824 Ty1/copia_CL122 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Vvinifera145_2019_rc REXdb_ID1542 Ty1/copia_CL045 (22) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_202 REXdb_ID1543 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_2020 REXdb_ID1544 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Vvinifera145_2021 REXdb_ID2977 Ty1/copia_CL072 (13) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_2026_rc REXdb_ID1545 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_2029 REXdb_ID1546 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_2033 REXdb_ID1547 Ty1/copia_CL134 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGATC (tRNA-Met) - not tested Vvinifera145_204_rc REXdb_ID2606 Ty1/copia_CL037 (24) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAA (tRNA-Ile) Vvinifera145_2040 REXdb_ID1548 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Vvinifera145_2041 REXdb_ID1549 Ty1/copia_CL234 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_2044 REXdb_ID4808 Ty1/copia_CL180 (6) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CAAAGACTCTATT not tested Vvinifera145_2045 REXdb_ID1550 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_2046 REXdb_ID1551 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Vvinifera145_2048 REXdb_ID1552 Ty1/copia_CL058 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Vvinifera145_205 REXdb_ID1553 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_2050 REXdb_ID1554 Ty1/copia_CL083 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCCAC (tRNA-Met) - not tested Vvinifera145_2052 REXdb_ID1555 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Vvinifera145_2053_rc REXdb_ID1556 Ty1/copia_CL067 (14) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCCT (tRNA-Met) - not tested Vvinifera145_2056_rc REXdb_ID2978 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Vvinifera145_2057 REXdb_ID5357 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_2058_rc REXdb_ID11863 Ty3/gypsy_CL120 (8) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAAAGCCAA (tRNA-Met) - not tested Vvinifera145_2062 REXdb_ID13350 Ty3/gypsy_CL163 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_2067_rc REXdb_ID1557 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_207 REXdb_ID2979 Ty1/copia_CL437 (3) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_2071_rc REXdb_ID6330 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_2074_rc REXdb_ID6313 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGAGGA (tRNA-Asp) - not tested Vvinifera145_2076 REXdb_ID6368 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 TGGCACCGTTGCTGGGGA (tRNA-Asp) - not tested Vvinifera145_2077_rc REXdb_ID7544 Ty3/gypsy_CL086 (12) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCACTGGGGATC (tRNA-Arg) - not tested Vvinifera145_2078 REXdb_ID6400 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_2084_rc REXdb_ID6288 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGATTG (tRNA-Asp) - not tested Vvinifera145_2086_rc REXdb_ID1558 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_2087_rc REXdb_ID6302 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_2091_rc REXdb_ID2980 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATTAGAGCA (tRNA-Met) - not tested Vvinifera145_2093 REXdb_ID2981 Ty1/copia_CL236 (5) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCAGATTT (tRNA-Met) - not tested Vvinifera145_2094 REXdb_ID1559 Ty1/copia_CL067 (14) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCACGTTT (tRNA-Met) - not tested Vvinifera145_2096 REXdb_ID3825 Ty1/copia_CL052 (18) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_2097_rc REXdb_ID1560 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_2100_rc REXdb_ID1562 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_2101 REXdb_ID1563 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_2102 REXdb_ID1564 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_2105_rc REXdb_ID1565 Ty1/copia_CL045 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_2111_rc REXdb_ID2982 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTTCCATTTTCA (tRNA-Glu) - not tested Vvinifera145_2112_rc REXdb_ID2983 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Vvinifera145_2113_rc REXdb_ID1566 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_2114_rc REXdb_ID13348 Ty3/gypsy_CL163 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_2115 REXdb_ID2984 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Vvinifera145_2118_rc REXdb_ID1567 Ty1/copia_CL651 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGTCAA (tRNA-Met) - not tested Vvinifera145_2119 REXdb_ID1568 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_2121_rc REXdb_ID1569 Ty1/copia_CL436 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_2125 REXdb_ID1570 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_2126_rc REXdb_ID1571 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_2128 REXdb_ID5358 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_2129 REXdb_ID1572 Ty1/copia_CL036 (24) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_2130_rc REXdb_ID5359 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_2132 REXdb_ID12221 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGC (tRNA-Met) - not tested Vvinifera145_2137 REXdb_ID2607 Ty1/copia_CL037 (24) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - - Vvinifera145_2139 REXdb_ID8867 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - + + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Vvinifera145_2140 REXdb_ID8869 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCTGTCTGTGGGAA (tRNA-Undet) - not tested Vvinifera145_2141 REXdb_ID1573 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_215_rc REXdb_ID8823 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Vvinifera145_216 REXdb_ID1574 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_218_rc REXdb_ID12229 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGC (tRNA-Met) - not tested Vvinifera145_219 REXdb_ID2608 Ty1/copia_CL037 (24) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCAC (tRNA-Ile) Vvinifera145_22 REXdb_ID1575 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Vvinifera145_221_rc REXdb_ID1576 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Vvinifera145_223 REXdb_ID1577 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Vvinifera145_224 REXdb_ID1578 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_227_rc REXdb_ID1579 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_230 REXdb_ID1580 Ty1/copia_CL235 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCA (tRNA-Met) - not tested Vvinifera145_232 REXdb_ID2609 Ty1/copia_CL037 (24) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAA (tRNA-Ile) Vvinifera145_233 REXdb_ID1581 Ty1/copia_CL087 (10) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCC (tRNA-Met) - not tested Vvinifera145_235 REXdb_ID6331 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_238 REXdb_ID3826 Ty1/copia_CL122 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_239_rc REXdb_ID6386 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_24_rc REXdb_ID1584 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_240_rc REXdb_ID6435 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 TGGCAATAGATT (tRNA-?) - not tested Vvinifera145_241_rc REXdb_ID1582 Ty1/copia_CL439 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCGAAGC (tRNA-?) - not tested Vvinifera145_242_rc REXdb_ID2985 Ty1/copia_CL236 (5) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 - - not tested Vvinifera145_243 REXdb_ID1583 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Vvinifera145_248_rc REXdb_ID2986 Ty1/copia_CL437 (3) Class_I::LTR::Ty1/copia::Ikeros - + + + + - - - - - not tested not tested 5 TGGTATCAAAGCTA (tRNA-Met) - not tested Vvinifera145_25_rc REXdb_ID1587 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Vvinifera145_250 REXdb_ID1585 Ty1/copia_CL067 (14) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Vvinifera145_251_rc REXdb_ID1586 Ty1/copia_CL045 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_258 REXdb_ID6345 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGTGCCGCTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_259 REXdb_ID6421 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_26 REXdb_ID1588 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 6 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_260 REXdb_ID12237 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCG (tRNA-Met) - not tested Vvinifera145_264 REXdb_ID6407 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCAGGGAT (tRNA-Asp) - not tested Vvinifera145_265_rc REXdb_ID6363 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 - - not tested Vvinifera145_267_rc REXdb_ID6352 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 4 - - not tested Vvinifera145_268 REXdb_ID6323 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_27 REXdb_ID8886 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTAG (tRNA-Lys) - not tested Vvinifera145_272_rc REXdb_ID6376 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_273 REXdb_ID4809 Ty1/copia_CL180 (6) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CAAAGACTCTA not tested Vvinifera145_276 REXdb_ID12226 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCG (tRNA-Met) - not tested Vvinifera145_277 REXdb_ID1589 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_278 REXdb_ID1590 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_282 REXdb_ID11608 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_290_rc REXdb_ID8842 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAAT (tRNA-Lys) - not tested Vvinifera145_295 REXdb_ID1591 Ty1/copia_CL439 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCACAAC (tRNA-Ile) - not tested Vvinifera145_296_rc REXdb_ID4810 Ty1/copia_CL097 (9) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAAACAGA not tested Vvinifera145_298 REXdb_ID1592 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_3_rc REXdb_ID8838 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTTTGT (tRNA-Lys) - not tested Vvinifera145_30 REXdb_ID3828 Ty1/copia_CL052 (18) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Vvinifera145_302 REXdb_ID12241 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAAAGC (tRNA-Met) - not tested Vvinifera145_303 REXdb_ID1593 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_304 REXdb_ID1594 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_305 REXdb_ID2610 Ty1/copia_CL037 (24) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAA (tRNA-Ile) Vvinifera145_307_rc REXdb_ID8889 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGTCGTCTGTGGGAA (tRNA-Lys) - not tested Vvinifera145_308 REXdb_ID1595 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGTCAG (tRNA-Ile) - not tested Vvinifera145_309 REXdb_ID1596 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_31 REXdb_ID1597 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_310_rc REXdb_ID1598 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_311 REXdb_ID1599 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_314_rc REXdb_ID6275 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAATGA (tRNA-Asp) - not tested Vvinifera145_315 REXdb_ID1600 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_317 REXdb_ID1601 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_319_rc REXdb_ID5360 Ty1/copia_CL652 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_322 REXdb_ID12230 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCG (tRNA-Met) - not tested Vvinifera145_324_rc REXdb_ID1602 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_329 REXdb_ID2987 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Vvinifera145_33 REXdb_ID1603 Ty1/copia_CL435 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Vvinifera145_330 REXdb_ID5361 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_332_rc REXdb_ID1604 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_333 REXdb_ID3829 Ty1/copia_CL122 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Vvinifera145_335 REXdb_ID1605 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_34 REXdb_ID1606 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_340_rc REXdb_ID1607 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_341 REXdb_ID1608 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_342 REXdb_ID1609 Ty1/copia_CL179 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Vvinifera145_347 REXdb_ID3830 Ty1/copia_CL394 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGTT (tRNA-Met) - not tested Vvinifera145_352 REXdb_ID8854 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGTCGTCTGTGGGAA (tRNA-Lys) - not tested Vvinifera145_357 REXdb_ID8862 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Vvinifera145_365_rc REXdb_ID6320 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_368_rc REXdb_ID6404 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_369_rc REXdb_ID6326 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_372 REXdb_ID6353 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - not tested not tested 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_374 REXdb_ID6398 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGTCGTTGCTGGGGAT (tRNA-Asp) - not tested Vvinifera145_375 REXdb_ID2349 Ty1/copia_CL440 (3) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_376 REXdb_ID1610 Ty1/copia_CL045 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_379_rc REXdb_ID1611 Ty1/copia_CL054 (17) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_38_rc REXdb_ID1614 Ty1/copia_CL054 (17) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_382 REXdb_ID6337 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_384_rc REXdb_ID1612 Ty1/copia_CL082 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCAAGGTT (tRNA-Met) - not tested Vvinifera145_386_rc REXdb_ID1613 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Vvinifera145_387 REXdb_ID6369 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCTATTGC (tRNA-?) - not tested Vvinifera145_388_rc REXdb_ID6428 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGAA (tRNA-Asp) - not tested Vvinifera145_39_rc REXdb_ID8865 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Vvinifera145_390_rc REXdb_ID1615 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_397 REXdb_ID6344 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGTCGGGGA (tRNA-Asp) - not tested Vvinifera145_398_rc REXdb_ID12227 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCG (tRNA-Met) - not tested Vvinifera145_399 REXdb_ID2988 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Vvinifera145_402_rc REXdb_ID13397 Ty3/gypsy_CL197 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_403_rc REXdb_ID1616 Ty1/copia_CL083 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Vvinifera145_405_rc REXdb_ID1617 Ty1/copia_CL316 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCGG (tRNA-Met) - not tested Vvinifera145_407_rc REXdb_ID1618 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Vvinifera145_409 REXdb_ID3831 Ty1/copia_CL052 (18) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Vvinifera145_41 REXdb_ID5362 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_411 REXdb_ID1619 Ty1/copia_CL234 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_412_rc REXdb_ID8816 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Vvinifera145_414_rc REXdb_ID1620 Ty1/copia_CL054 (17) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_415 REXdb_ID1621 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_416_rc REXdb_ID1622 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_42 REXdb_ID11861 Ty3/gypsy_CL120 (8) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_423_rc REXdb_ID1623 Ty1/copia_CL083 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Vvinifera145_426 REXdb_ID1624 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAGG (tRNA-Met) - not tested Vvinifera145_433_rc REXdb_ID1625 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_434_rc REXdb_ID1626 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_435 REXdb_ID12243 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAAAGC (tRNA-Met) - not tested Vvinifera145_436_rc REXdb_ID1627 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCCAA (tRNA-Met) - not tested Vvinifera145_438 REXdb_ID6387 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGAA (tRNA-Asp) - not tested Vvinifera145_439 REXdb_ID5363 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_440_rc REXdb_ID1628 Ty1/copia_CL178 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Vvinifera145_441 REXdb_ID12220 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCG (tRNA-Met) - not tested Vvinifera145_442_rc REXdb_ID3832 Ty1/copia_CL172 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTACCAGAGC (tRNA-?) - not tested Vvinifera145_443 REXdb_ID7541 Ty3/gypsy_CL086 (12) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCACTGGGGATCA (tRNA-Arg) - not tested Vvinifera145_448 REXdb_ID5364 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_449_rc REXdb_ID13579 Ty3/gypsy_CL360 (2) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTGCTTTCAT (tRNA-Thr) - not tested Vvinifera145_450 REXdb_ID2611 Ty1/copia_CL037 (24) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAA (tRNA-Ile) Vvinifera145_46_rc REXdb_ID6343 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_462 REXdb_ID1629 Ty1/copia_CL045 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAG (tRNA-Met) - not tested Vvinifera145_465_rc REXdb_ID1630 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAGG (tRNA-Met) - not tested Vvinifera145_469 REXdb_ID6335 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_471_rc REXdb_ID3833 Ty1/copia_CL158 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAGC (tRNA-Met) - not tested Vvinifera145_473_rc REXdb_ID1631 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_474_rc REXdb_ID1632 Ty1/copia_CL054 (17) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Vvinifera145_475 REXdb_ID1633 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Vvinifera145_476 REXdb_ID8883 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAAT (tRNA-Lys) - not tested Vvinifera145_480 REXdb_ID1634 Ty1/copia_CL083 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Vvinifera145_482 REXdb_ID8829 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGACGTCTGTGG (tRNA-Lys) - not tested Vvinifera145_483_rc REXdb_ID8839 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAATT (tRNA-Lys) - not tested Vvinifera145_484_rc REXdb_ID6292 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAATGA (tRNA-Asp) - not tested Vvinifera145_485 REXdb_ID1635 Ty1/copia_CL036 (24) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_486 REXdb_ID3834 Ty1/copia_CL172 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAGATT (tRNA-Met) - not tested Vvinifera145_488 REXdb_ID1636 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_489_rc REXdb_ID1637 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_491_rc REXdb_ID1638 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_496_rc REXdb_ID1639 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 6 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_5 REXdb_ID1640 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_50_rc REXdb_ID6355 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_502_rc REXdb_ID6391 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_505 REXdb_ID6354 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCTGTTAC (tRNA-?) - not tested Vvinifera145_506_rc REXdb_ID13398 Ty3/gypsy_CL197 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_510_rc REXdb_ID6346 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCGTTGTCGAGGA (tRNA-Asp) - not tested Vvinifera145_513_rc REXdb_ID6378 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_514 REXdb_ID6306 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_515_rc REXdb_ID6418 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCGTTGTCGGGGAT (tRNA-Asp) - not tested Vvinifera145_516_rc REXdb_ID1641 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_517_rc REXdb_ID11607 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_519_rc REXdb_ID3835 Ty1/copia_CL646 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTAGGTT (tRNA-Met) - not tested Vvinifera145_520 REXdb_ID6403 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_523_rc REXdb_ID1642 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_524_rc REXdb_ID1643 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_529_rc REXdb_ID3836 Ty1/copia_CL147 (7) Class_I::LTR::Ty1/copia::Ivana - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_530 REXdb_ID8871 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Vvinifera145_536_rc REXdb_ID3837 Ty1/copia_CL052 (18) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Vvinifera145_539 REXdb_ID5365 Ty1/copia_CL434 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_54_rc REXdb_ID1648 Ty1/copia_CL134 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_542 REXdb_ID1644 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_546 REXdb_ID1645 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_547 REXdb_ID1646 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_548 REXdb_ID1647 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_553_rc REXdb_ID1649 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_559 REXdb_ID1650 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_56_rc REXdb_ID3839 Ty1/copia_CL709 (1) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_560 REXdb_ID6283 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAATGA (tRNA-Asp) - not tested Vvinifera145_561 REXdb_ID2989 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Vvinifera145_564 REXdb_ID1651 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - not tested not tested 5 TGGTATCAGAGTCAAG (tRNA-Met) - not tested Vvinifera145_565_rc REXdb_ID3838 Ty1/copia_CL122 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 - - not tested Vvinifera145_569 REXdb_ID2350 Ty1/copia_CL237 (5) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 4 TGGTATCAGAGCCAGGT (tRNA-Met) - not tested Vvinifera145_570_rc REXdb_ID8890 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - + - - 5 TGGCGTCGTCTGTGGGAA (tRNA-Lys) - not tested Vvinifera145_571 REXdb_ID1652 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_572_rc REXdb_ID13016 Ty3/gypsy_CL132 (7) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_577 REXdb_ID3840 Ty1/copia_CL158 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAGC (tRNA-Met) - not tested Vvinifera145_578_rc REXdb_ID1653 Ty1/copia_CL438 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCAAT (tRNA-Met) - not tested Vvinifera145_580_rc REXdb_ID2612 Ty1/copia_CL037 (24) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CACGTTATCAGCACGAA (tRNA-Ile) Vvinifera145_583 REXdb_ID11836 Ty3/gypsy_CL090 (11) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_584_rc REXdb_ID1654 Ty1/copia_CL650 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAC (tRNA-Met) - not tested Vvinifera145_585 REXdb_ID6278 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAAT (tRNA-Asp) - not tested Vvinifera145_591_rc REXdb_ID3841 Ty1/copia_CL278 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGAGCCAGGTT (tRNA-Met) - not tested Vvinifera145_594_rc REXdb_ID2990 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_596 REXdb_ID4811 Ty1/copia_CL180 (6) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 4 - - not tested Vvinifera145_598_rc REXdb_ID4605 Ty1/copia_CL146 (7) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - 5 TGGTATCAGAGCTAGA (tRNA-Met) - not tested Vvinifera145_599 REXdb_ID3842 Ty1/copia_CL172 (6) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCCAGATT (tRNA-Met) - not tested Vvinifera145_6_rc REXdb_ID1673 Ty1/copia_CL054 (17) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Vvinifera145_601 REXdb_ID6296 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_602_rc REXdb_ID6427 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 - - not tested Vvinifera145_605_rc REXdb_ID2991 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_606_rc REXdb_ID1655 Ty1/copia_CL054 (17) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Vvinifera145_609_rc REXdb_ID2613 Ty1/copia_CL037 (24) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 4 - - - Vvinifera145_610 REXdb_ID8863 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGTCGTCTGTGGGAATC (tRNA-Lys) - not tested Vvinifera145_611_rc REXdb_ID8833 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAAT (tRNA-Lys) - not tested Vvinifera145_612 REXdb_ID1656 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Vvinifera145_613_rc REXdb_ID1657 Ty1/copia_CL087 (10) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 6 - - not tested Vvinifera145_616_rc REXdb_ID1658 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_619_rc REXdb_ID8857 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAATT (tRNA-Lys) - not tested Vvinifera145_621 REXdb_ID1659 Ty1/copia_CL067 (14) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Vvinifera145_624_rc REXdb_ID5366 Ty1/copia_CL064 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_626 REXdb_ID12242 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGC (tRNA-Met) - not tested Vvinifera145_627 REXdb_ID1660 Ty1/copia_CL087 (10) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_630 REXdb_ID6361 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_633 REXdb_ID2992 Ty1/copia_CL072 (13) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAAAGCAAGGTT (tRNA-Ile) - not tested Vvinifera145_634 REXdb_ID6284 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_635_rc REXdb_ID2614 Ty1/copia_CL037 (24) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAA (tRNA-Ile) Vvinifera145_64 REXdb_ID12222 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGC (tRNA-Met) - not tested Vvinifera145_640 REXdb_ID2615 Ty1/copia_CL037 (24) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATTAGCATGA (tRNA-Ile) Vvinifera145_641 REXdb_ID2993 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCC (tRNA-Met) - not tested Vvinifera145_642 REXdb_ID2994 Ty1/copia_CL072 (13) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCAAGGTT (tRNA-Met) - not tested Vvinifera145_643_rc REXdb_ID1661 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_644_rc REXdb_ID6327 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + + - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Vvinifera145_645_rc REXdb_ID1662 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Vvinifera145_649_rc REXdb_ID13809 Ty3/gypsy_CL763 (1) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_650_rc REXdb_ID6285 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCGTTGCTGGGGA (tRNA-Asp) - not tested Vvinifera145_651_rc REXdb_ID5367 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_657 REXdb_ID6341 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGTCATTGCCGGGGA (tRNA-Asp) - not tested Vvinifera145_659_rc REXdb_ID8877 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGTCGTCTGTGGGAA (tRNA-Lys) - not tested Vvinifera145_66_rc REXdb_ID12239 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAAAGCA (tRNA-Ile) - not tested Vvinifera145_661 REXdb_ID1663 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_663_rc REXdb_ID1664 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_665_rc REXdb_ID13192 Ty3/gypsy_CL070 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_666 REXdb_ID6401 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_667 REXdb_ID6303 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTGCCGG (tRNA-Asp) - not tested Vvinifera145_669_rc REXdb_ID6364 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGTCGTTGCCGGGAA (tRNA-Asp) - not tested Vvinifera145_674_rc REXdb_ID1665 Ty1/copia_CL082 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAGGTT (tRNA-Met) - not tested Vvinifera145_675_rc REXdb_ID1666 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_676 REXdb_ID12244 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATTAGAGC (tRNA-Met) - not tested Vvinifera145_677 REXdb_ID1667 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Vvinifera145_68 REXdb_ID1668 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_681 REXdb_ID6365 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCATTGCG (tRNA-Asp) - not tested Vvinifera145_682_rc REXdb_ID6379 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_684_rc REXdb_ID2995 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_685 REXdb_ID1669 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_689 REXdb_ID13188 Ty3/gypsy_CL070 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_69 REXdb_ID1670 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_690_rc REXdb_ID6410 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGTTGTTGCCAGGGAT (tRNA-Asp) - not tested Vvinifera145_692_rc REXdb_ID7545 Ty3/gypsy_CL086 (12) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCACT (tRNA-Arg) - not tested Vvinifera145_693 REXdb_ID8880 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGTCGTCTGTGGGAA (tRNA-Lys) - not tested Vvinifera145_696 REXdb_ID1671 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_697_rc REXdb_ID1672 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_701_rc REXdb_ID6301 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 - - not tested Vvinifera145_71 REXdb_ID1674 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_712 REXdb_ID12228 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGC (tRNA-Met) - not tested Vvinifera145_713 REXdb_ID1675 Ty1/copia_CL618 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 - - not tested Vvinifera145_715_rc REXdb_ID1676 Ty1/copia_CL036 (24) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_717_rc REXdb_ID2996 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTTCCATTTTC (tRNA-Glu) - not tested Vvinifera145_722 REXdb_ID1677 Ty1/copia_CL082 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAGGTT (tRNA-Met) - not tested Vvinifera145_723_rc REXdb_ID1678 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_725 REXdb_ID1679 Ty1/copia_CL439 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Vvinifera145_726 REXdb_ID1680 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_727 REXdb_ID1681 Ty1/copia_CL179 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATTAGAGCT (tRNA-Met) - not tested Vvinifera145_728 REXdb_ID1682 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_729_rc REXdb_ID1683 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_73 REXdb_ID1684 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_730_rc REXdb_ID2351 Ty1/copia_CL440 (3) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGGGCA (tRNA-Leu) - not tested Vvinifera145_734_rc REXdb_ID12231 Ty3/gypsy_CL044 (28) Class_I::LTR::Ty3/gypsy::chromovirus::Galadriel + + + + + - + - - - - - 4 TGGTATCAGAGCG (tRNA-Met) - not tested Vvinifera145_735_rc REXdb_ID8813 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCTGTCTGTGGGAA (tRNA-Undet) - not tested Vvinifera145_736_rc REXdb_ID1685 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTTC (tRNA-Met) - not tested Vvinifera145_737 REXdb_ID1686 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_739_rc REXdb_ID11606 Ty3/gypsy_CL012 (143) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - - + - - - - 5 TGGTATTAGAGCA (tRNA-Met) - not tested Vvinifera145_74_rc REXdb_ID1688 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_741_rc REXdb_ID3843 Ty1/copia_CL147 (7) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_742_rc REXdb_ID3844 Ty1/copia_CL052 (18) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_744 REXdb_ID2997 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGTGC (tRNA-?) - not tested Vvinifera145_745_rc REXdb_ID1687 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Vvinifera145_75 REXdb_ID1689 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_754_rc REXdb_ID1690 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Vvinifera145_756 REXdb_ID8847 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAATA (tRNA-Asp) - not tested Vvinifera145_757 REXdb_ID1691 Ty1/copia_CL067 (14) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTTTGG (tRNA-Met) - not tested Vvinifera145_759_rc REXdb_ID6408 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_762 REXdb_ID13051 Ty3/gypsy_CL162 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Tekay + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_763_rc REXdb_ID6412 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCATTGTCGGGGAT (tRNA-Asn) - not tested Vvinifera145_767_rc REXdb_ID2998 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Vvinifera145_770_rc REXdb_ID1692 Ty1/copia_CL045 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_771_rc REXdb_ID8824 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Vvinifera145_774_rc REXdb_ID3845 Ty1/copia_CL122 (8) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_775 REXdb_ID5368 Ty1/copia_CL064 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_777 REXdb_ID8840 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + - - - - + - - 5 TGGCGCCGTCTGTGGGAATT (tRNA-Lys) - not tested Vvinifera145_778 REXdb_ID1693 Ty1/copia_CL083 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCCA (tRNA-Met) - not tested Vvinifera145_779 REXdb_ID8885 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Vvinifera145_780_rc REXdb_ID8836 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAAT (tRNA-Lys) - not tested Vvinifera145_781 REXdb_ID1694 Ty1/copia_CL067 (14) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 6 TGGTATCAGAGCCACGTTT (tRNA-Met) - not tested Vvinifera145_783_rc REXdb_ID8872 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTG (tRNA-Lys) - not tested Vvinifera145_784_rc REXdb_ID8825 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Vvinifera145_785 REXdb_ID6377 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_786_rc REXdb_ID6375 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTGCC (tRNA-Asp) - not tested Vvinifera145_788_rc REXdb_ID1695 Ty1/copia_CL036 (24) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCG (tRNA-Met) - not tested Vvinifera145_791 REXdb_ID13185 Ty3/gypsy_CL070 (14) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCCAGGTTAC (tRNA-Met) - not tested Vvinifera145_792 REXdb_ID5369 Ty1/copia_CL434 (3) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_795_rc REXdb_ID1696 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAAAGCCAG (tRNA-Met) - not tested Vvinifera145_796 REXdb_ID1697 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_799 REXdb_ID6393 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_800 REXdb_ID1698 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAGG (tRNA-Met) - not tested Vvinifera145_802 REXdb_ID1699 Ty1/copia_CL058 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Vvinifera145_803 REXdb_ID2999 Ty1/copia_CL072 (13) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCAAGGTTTTGA (tRNA-Met) - not tested Vvinifera145_804 REXdb_ID8834 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAATA (tRNA-Asp) - not tested Vvinifera145_806 REXdb_ID13349 Ty3/gypsy_CL163 (5) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_807_rc REXdb_ID7550 Ty3/gypsy_CL086 (12) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCATTGGGGATC (tRNA-His) - not tested Vvinifera145_808 REXdb_ID1700 Ty1/copia_CL435 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTAACAGAGC (tRNA-Met) - not tested Vvinifera145_811_rc REXdb_ID1701 Ty1/copia_CL178 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Vvinifera145_817 REXdb_ID8848 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Vvinifera145_818 REXdb_ID1702 Ty1/copia_CL178 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGA (tRNA-Met) - not tested Vvinifera145_819 REXdb_ID3000 Ty1/copia_CL026 (29) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_82 REXdb_ID11860 Ty3/gypsy_CL120 (8) Class_I::LTR::Ty3/gypsy::chromovirus::CRM + + + + + - + - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_820 REXdb_ID5370 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_824_rc REXdb_ID1703 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_826_rc REXdb_ID2352 Ty1/copia_CL440 (3) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_827_rc REXdb_ID1704 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_83_rc REXdb_ID1708 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_830 REXdb_ID3846 Ty1/copia_CL649 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCTA (tRNA-Met) - not tested Vvinifera145_833 REXdb_ID8837 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAAT (tRNA-Lys) - not tested Vvinifera145_834_rc REXdb_ID1705 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_835_rc REXdb_ID5371 Ty1/copia_CL652 (2) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Vvinifera145_836_rc REXdb_ID1706 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGTCAAG (tRNA-Met) - not tested Vvinifera145_838 REXdb_ID1707 Ty1/copia_CL054 (17) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Vvinifera145_839 REXdb_ID3001 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Vvinifera145_84_rc REXdb_ID1711 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_840 REXdb_ID5372 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_841_rc REXdb_ID1709 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAGG (tRNA-Met) - not tested Vvinifera145_842 REXdb_ID2616 Ty1/copia_CL037 (24) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - 5 - - CGTTATCAGCACGAA (tRNA-Ile) Vvinifera145_843 REXdb_ID3002 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Vvinifera145_845 REXdb_ID8826 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Vvinifera145_846 REXdb_ID1710 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_849_rc REXdb_ID5373 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_85_rc REXdb_ID1712 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Vvinifera145_851 REXdb_ID8843 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAA (tRNA-Lys) - not tested Vvinifera145_852 REXdb_ID8844 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCACCGTCTGTGGGAA (tRNA-Lys) - not tested Vvinifera145_855 REXdb_ID5374 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_857 REXdb_ID3847 Ty1/copia_CL278 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Vvinifera145_86_rc REXdb_ID1715 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAACCAAG (tRNA-Met) - not tested Vvinifera145_860 REXdb_ID3003 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCA (tRNA-Met) - not tested Vvinifera145_861_rc REXdb_ID8878 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCATCTGTGGGAA (tRNA-Lys) - not tested Vvinifera145_862 REXdb_ID1713 Ty1/copia_CL054 (17) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_865_rc REXdb_ID1714 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_868_rc REXdb_ID8804 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTTGGGAATC (tRNA-Undet) - not tested Vvinifera145_870 REXdb_ID2617 Ty1/copia_CL037 (24) Class_I::LTR::Ty1/copia::Bianca - + + + + - - - - - not tested not tested 5 - - CGTTATCAGCACGAA (tRNA-Ile) Vvinifera145_875_rc REXdb_ID6289 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTGCCGGGGATTGA (tRNA-Asp) - not tested Vvinifera145_878_rc REXdb_ID6317 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGAGGA (tRNA-Asp) - not tested Vvinifera145_880 REXdb_ID1716 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_881 REXdb_ID5375 Ty1/copia_CL064 (14) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_885 REXdb_ID1717 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_886_rc REXdb_ID1718 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_889 REXdb_ID1719 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_891 REXdb_ID1720 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_893 REXdb_ID6438 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 4 TGGCGCTGTTGTCGGGGAT (tRNA-Asp) - not tested Vvinifera145_895 REXdb_ID6426 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_896 REXdb_ID8881 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGGA (tRNA-Lys) - not tested Vvinifera145_897_rc REXdb_ID6357 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAC (tRNA-Asp) - not tested Vvinifera145_898 REXdb_ID1721 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_9 REXdb_ID1722 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_90_rc REXdb_ID5376 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_905 REXdb_ID1818 Ty1/copia_CL053 (17) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTT (tRNA-Met) - not tested Vvinifera145_907 REXdb_ID1723 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCTAG (tRNA-Met) - not tested Vvinifera145_909_rc REXdb_ID6381 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_910 REXdb_ID1724 Ty1/copia_CL036 (24) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_911_rc REXdb_ID1725 Ty1/copia_CL178 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAGC (tRNA-Met) - not tested Vvinifera145_912_rc REXdb_ID6321 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_913 REXdb_ID1726 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_915 REXdb_ID8884 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAAA (tRNA-Lys) - not tested Vvinifera145_917 REXdb_ID6315 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTACCGGGGAA (tRNA-Asp) - not tested Vvinifera145_918_rc REXdb_ID6329 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGCTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_919 REXdb_ID4607 Ty1/copia_CL146 (7) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - 5 TGGTATCAGAGCTAGA (tRNA-Met) - not tested Vvinifera145_92 REXdb_ID1727 Ty1/copia_CL045 (22) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_921_rc REXdb_ID6394 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_922 REXdb_ID6294 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_923_rc REXdb_ID1728 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_924_rc REXdb_ID6348 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - + - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_925 REXdb_ID6395 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGCTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_934 REXdb_ID3004 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Vvinifera145_936_rc REXdb_ID1729 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 - - not tested Vvinifera145_937_rc REXdb_ID1730 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_938_rc REXdb_ID1731 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_939_rc REXdb_ID5377 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCT (tRNA-Met) - not tested Vvinifera145_94 REXdb_ID1732 Ty1/copia_CL179 (6) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCT (tRNA-Met) - not tested Vvinifera145_940_rc REXdb_ID1733 Ty1/copia_CL433 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 4 TGGTATTAGAGCTAG (tRNA-Met) - not tested Vvinifera145_941 REXdb_ID1734 Ty1/copia_CL009 (74) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_943_rc REXdb_ID13399 Ty3/gypsy_CL197 (4) Class_I::LTR::Ty3/gypsy::chromovirus::Reina + + + + + - + - - - - - 5 TGGTATCAGAAC (tRNA-Met) - not tested Vvinifera145_944 REXdb_ID1735 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_946 REXdb_ID1736 Ty1/copia_CL054 (17) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_95_rc REXdb_ID1740 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_950 REXdb_ID4812 Ty1/copia_CL097 (9) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAAACAGATT not tested Vvinifera145_954_rc REXdb_ID1737 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_955 REXdb_ID1738 Ty1/copia_CL036 (24) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_956_rc REXdb_ID1739 Ty1/copia_CL054 (17) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested 5 TGGTATCAGAGCG (tRNA-Met) - not tested Vvinifera145_957 REXdb_ID5378 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_958 REXdb_ID8874 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - - - - 5 TGGCGCCGTCTGTGGGAAAT (tRNA-Lys) - not tested Vvinifera145_97 REXdb_ID5379 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_971 REXdb_ID1819 Ty1/copia_CL053 (17) Class_I::LTR::Ty1/copia::Alesia + + + + + - - - - - - - 5 TGGTATCAGAGCCAGGTT (tRNA-Met) - not tested Vvinifera145_973 REXdb_ID1741 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_974_rc REXdb_ID6414 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGTCGTTGCCGGGGAT (tRNA-Asp) - not tested Vvinifera145_976_rc REXdb_ID1742 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_977_rc REXdb_ID1743 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAA (tRNA-Met) - not tested Vvinifera145_98_rc REXdb_ID3005 Ty1/copia_CL022 (32) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - 5 TGGTATCAGAGCCTA (tRNA-Met) - not tested Vvinifera145_980 REXdb_ID1744 Ty1/copia_CL134 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCA (tRNA-Met) - not tested Vvinifera145_983_rc REXdb_ID1745 Ty1/copia_CL007 (91) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAG (tRNA-Met) - not tested Vvinifera145_984_rc REXdb_ID3848 Ty1/copia_CL278 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - 5 TGGTATCAGAGCAA (tRNA-Met) - not tested Vvinifera145_986 REXdb_ID1746 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCCAAG (tRNA-Met) - not tested Vvinifera145_989 REXdb_ID4813 Ty1/copia_CL097 (9) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - 5 - CTTAAAACAGATT not tested Vvinifera145_99_rc REXdb_ID6324 Ty3/gypsy_CL011 (166) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Athila + + + + + - - - - - - - 5 TGGCGCCGTTGCCGGGGAA (tRNA-Asp) - not tested Vvinifera145_992 REXdb_ID5380 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAAAGCCTAG (tRNA-Met) - not tested Vvinifera145_993 REXdb_ID5381 Ty1/copia_CL021 (36) Class_I::LTR::Ty1/copia::Tork + + + + + - - - - - - - 5 TGGTATCAGAGCCTAG (tRNA-Met) - not tested Vvinifera145_995_rc REXdb_ID1747 Ty1/copia_CL003 (197) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGTCAAG (tRNA-Met) - not tested Vvinifera145_996 REXdb_ID8828 Ty3/gypsy_CL021 (88) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Retand + + + + + + - - - + - - 5 TGGCGCCGTCTGTGGGAATT (tRNA-Lys) - not tested Vvinifera145_997 REXdb_ID1748 Ty1/copia_CL082 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - 5 TGGTATCAGAGCAAGGTT (tRNA-Met) - not tested Vvinifera145_998 REXdb_ID7543 Ty3/gypsy_CL086 (12) Class_I::LTR::Ty3/gypsy::non-chromovirus::OTA::Ogre/Tat::Ogre + + + + + + - - - - - - 5 TGGCGACTCCACTGGGGATT (tRNA-His) - not tested Wicker_Adena_Os_cons REXdb_ID2353 Ty1/copia_CL001 (445) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - not tested not tested not tested not tested Wicker_Ale_A_109N23-1 REXdb_ID1749 Ty1/copia_CL124 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_Ale_B_AF459088-1 REXdb_ID1750 Ty1/copia_CL060 (15) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_Alina_At-1 REXdb_ID1751 Ty1/copia_CL095 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_Ally_Os_cons REXdb_ID1752 Ty1/copia_CL056 (16) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_Alva_At-101 REXdb_ID1753 Ty1/copia_CL032 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_Angela_A_cons REXdb_ID2354 Ty1/copia_CL050 (18) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - not tested not tested not tested not tested Wicker_Angela_C_AF497474-1 REXdb_ID2355 Ty1/copia_CL050 (18) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - not tested not tested not tested not tested Wicker_Anika_At_cons REXdb_ID2356 Ty1/copia_CL248 (4) Class_I::LTR::Ty1/copia::Angela - + + + + - - - - - not tested not tested not tested not tested not tested not tested Wicker_ATCopia11_At-110 REXdb_ID1754 Ty1/copia_CL710 (1) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_ATCopia11_At-116 REXdb_ID1755 Ty1/copia_CL319 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_ATCopia12_At-102 REXdb_ID1756 Ty1/copia_CL441 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_ATCopia12_At-3 REXdb_ID1757 Ty1/copia_CL441 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_ATCopia13_At-106 REXdb_ID1758 Ty1/copia_CL441 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_ATCopia22_At-109 REXdb_ID1759 Ty1/copia_CL095 (9) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_ATCopia26_At-103 REXdb_ID1760 Ty1/copia_CL126 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_ATCopia38B_At-112 REXdb_ID1761 Ty1/copia_CL513 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_ATCopia4_At-1 REXdb_ID1762 Ty1/copia_CL711 (1) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_ATCopia43_At-1 REXdb_ID4608 Ty1/copia_CL250 (4) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - not tested not tested not tested not tested Wicker_ATCopia58_At-101 REXdb_ID4609 Ty1/copia_CL185 (5) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - not tested not tested not tested not tested Wicker_ATCopia70_At-113 REXdb_ID1763 Ty1/copia_CL246 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_ATCopia75_At-114 REXdb_ID1764 Ty1/copia_CL712 (1) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_ATCopia78_At_cons REXdb_ID3849 Ty1/copia_CL027 (28) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - not tested not tested not tested not tested Wicker_ATCopia83_At-108 REXdb_ID1765 Ty1/copia_CL126 (7) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_ATCopia95_At-1 REXdb_ID4814 Ty1/copia_CL713 (1) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - not tested not tested not tested not tested Wicker_Athea_At-101 REXdb_ID1766 Ty1/copia_CL325 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_BARE1_B_cons REXdb_ID2357 Ty1/copia_CL050 (18) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - not tested not tested not tested not tested Wicker_BARE1_C_cons REXdb_ID2358 Ty1/copia_CL050 (18) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - not tested not tested not tested not tested Wicker_Betsy_Os_cons REXdb_ID1767 Ty1/copia_CL056 (16) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_Beyla_A_Os_cons REXdb_ID2618 Ty1/copia_CL104 (9) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - + not tested not tested not tested not tested Wicker_Boba_AY494981-1 REXdb_ID1768 Ty1/copia_CL312 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_Brina_Os-105 REXdb_ID1769 Ty1/copia_CL056 (16) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_COPIO_Os_cons REXdb_ID4610 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + + - - not tested not tested not tested not tested Wicker_Echidne_Os_cons REXdb_ID4611 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - not tested not tested not tested not tested Wicker_Hopscotch_Os-108 REXdb_ID1770 Ty1/copia_CL118 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_Hopscotch_Os-110 REXdb_ID1771 Ty1/copia_CL118 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_Houba_Os_cons REXdb_ID4815 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - not tested not tested not tested not tested Wicker_Ikeros_A_102J11-1 REXdb_ID3006 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - not tested not tested not tested not tested not tested not tested Wicker_Ilona_C_Os_cons REXdb_ID3850 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - not tested not tested not tested not tested Wicker_Kalia_Os-105 REXdb_ID3851 Ty1/copia_CL555 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - not tested not tested not tested not tested Wicker_Leojyg_AY268139-1 REXdb_ID1772 Ty1/copia_CL033 (25) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested not tested not tested not tested not tested Wicker_Leona_Os_cons REXdb_ID1773 Ty1/copia_CL210 (5) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_Lilly_Os-110 REXdb_ID1774 Ty1/copia_CL558 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_Marcus_Os-1 REXdb_ID4612 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + - - - not tested not tested not tested not tested Wicker_Osr1_Os_cons REXdb_ID4816 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - not tested not tested not tested not tested Wicker_Osr10_Os_cons REXdb_ID4613 Ty1/copia_CL361 (3) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - + + - - not tested not tested not tested not tested Wicker_Osr12_Os_cons REXdb_ID1775 Ty1/copia_CL399 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_Osr4_Os_cons REXdb_ID3852 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - not tested not tested not tested not tested Wicker_Osr8_Os_cons REXdb_ID4614 Ty1/copia_CL128 (7) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - not tested not tested not tested not tested Wicker_Osr9_Os_cons REXdb_ID4615 Ty1/copia_CL019 (39) Class_I::LTR::Ty1/copia::SIRE + + + + + - - - - - - - not tested not tested not tested not tested Wicker_Ostonor1_Os_cons REXdb_ID3007 Ty1/copia_CL006 (103) Class_I::LTR::Ty1/copia::Ikeros + + + + + - - - - - - - not tested not tested not tested not tested Wicker_Retrofit4_Os-101 REXdb_ID1776 Ty1/copia_CL118 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_rn_126-72_Os REXdb_ID1777 Ty1/copia_CL118 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_rn_154-162_Os_cons REXdb_ID1778 Ty1/copia_CL056 (16) Class_I::LTR::Ty1/copia::Ale - + + + + - - - - - not tested not tested not tested not tested not tested not tested Wicker_rn_157-332_Os_103 REXdb_ID3853 Ty1/copia_CL398 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - not tested not tested not tested not tested Wicker_rn_179-105_Os-102 REXdb_ID1779 Ty1/copia_CL294 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_rn_179-105_Os-104 REXdb_ID1780 Ty1/copia_CL294 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_rn_18-313_Os-101 REXdb_ID3854 Ty1/copia_CL277 (4) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - not tested not tested not tested not tested Wicker_rn_228-214_Os_cons REXdb_ID3855 Ty1/copia_CL402 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - not tested not tested not tested not tested Wicker_rn_25-15_Os-111 REXdb_ID1781 Ty1/copia_CL080 (11) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_rn_252-146_Os REXdb_ID1782 Ty1/copia_CL556 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_rn_374-205_Os-104 REXdb_ID3856 Ty1/copia_CL566 (2) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - not tested not tested not tested not tested Wicker_rn_414-223_Os-107 REXdb_ID1783 Ty1/copia_CL118 (8) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_rn_416-225_Os-6 REXdb_ID1784 Ty1/copia_CL294 (4) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_rn_503-254_Os-103 REXdb_ID3857 Ty1/copia_CL402 (3) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - not tested not tested not tested not tested Wicker_rn_72-48_Os-1 REXdb_ID1785 Ty1/copia_CL400 (3) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_rn_74-211_Os-7 REXdb_ID1786 Ty1/copia_CL653 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_rn_74-211_Os-8 REXdb_ID1787 Ty1/copia_CL653 (2) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_rn_78-53_Os-102 REXdb_ID1788 Ty1/copia_CL033 (25) Class_I::LTR::Ty1/copia::Ale + + + + + - - - - - - - not tested not tested not tested not tested Wicker_rn_89-81_Os-106 REXdb_ID3858 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - not tested not tested not tested not tested Wicker_RomaniAT5_At-3 REXdb_ID2619 Ty1/copia_CL257 (4) Class_I::LTR::Ty1/copia::Bianca + + + + + - - - - - - - not tested not tested not tested not tested Wicker_SC3_Os_cons REXdb_ID3859 Ty1/copia_CL025 (30) Class_I::LTR::Ty1/copia::Ivana + + + + + - - - - - - - not tested not tested not tested not tested Wicker_TAR_C_Os6 REXdb_ID4818 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - not tested not tested not tested not tested Wicker_Tara_Os_cons REXdb_ID4817 Ty1/copia_CL008 (82) Class_I::LTR::Ty1/copia::TAR + + + + + - - - - - - - not tested not tested not tested not tested Wicker_WIS_B_cons REXdb_ID2359 Ty1/copia_CL050 (18) Class_I::LTR::Ty1/copia::Angela + + + + + - - - - - - - not tested not tested not tested not tested YARCTy1-1 REXdb_ID5412 Ty1/copia_CL202 (5) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - - - - - not tested TGGTAGCGCC (tRNA-Met) not tested - YBL100W-B REXdb_ID5413 Ty1/copia_CL202 (5) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - - - - - not tested TGGTAGCGCC (tRNA-Met) not tested - YGRWTy3-1 REXdb_ID13831 Ty3/gypsy_CL295 (2) Class_I::LTR::Ty3/gypsy::chromovirus::chromo-outgroup + + + + + - - - - - - - not tested not tested not tested not tested YHLWTy4-1 REXdb_ID5414 Ty1/copia_CL514 (2) Class_I::LTR::Ty1/copia::Ty1-outgroup - + + + + - - - - - not tested not tested not tested TGGCGACCCCAGTGAGGG (tRNA-Asn) not tested - YLRWTy1-3 REXdb_ID5415 Ty1/copia_CL202 (5) Class_I::LTR::Ty1/copia::Ty1-outgroup + + + + + - - - - - - - not tested TGGTAGCGCC (tRNA-Met) not tested -