# HG changeset patch
# User petr-novak
# Date 1701183110 0
# Node ID 27e5f58763f2d77d23c308343ee25ae2ba4f2101
# Parent  d5508ce50c497e03cb90d2129983b194e32db1a9
planemo upload commit 2b3bc2334397749509cdf6fc432d891a09763c4f-dirty

diff -r d5508ce50c49 -r 27e5f58763f2 dante_ltr_summary.xml
--- a/dante_ltr_summary.xml	Tue Nov 28 14:32:03 2023 +0000
+++ b/dante_ltr_summary.xml	Tue Nov 28 14:51:50 2023 +0000
@@ -5,13 +5,16 @@
     <expand macro="requirements" />
     <command detect_errors="exit_code"><![CDATA[
         dante_ltr_summary -g '$input1' -o output &&
-        mv output.pdf '$output1'
+         ls -l &&
+        cp output.html $output1 &&
+        mkdir -p ${output1.extra_files_path} &&
+        cp -r output_plots ${output1.extra_files_path}/
     ]]></command>
     <inputs>
         <param type="data" name="input1" format="gff3" label="GFF3 output from DANTE_LTR" />
     </inputs>
     <outputs>
-        <data label="DANTE_LTR summmary from dataset $input1.hid" format="pdf" name="output1" />
+        <data label="DANTE_LTR summmary from dataset $input1.hid" format="html" name="output1" />
     </outputs>
     <help><![CDATA[
         This tool takes GFF3 output from DANTE_LTR and make graphical summary of the results.
diff -r d5508ce50c49 -r 27e5f58763f2 macros.xml
--- a/macros.xml	Tue Nov 28 14:32:03 2023 +0000
+++ b/macros.xml	Tue Nov 28 14:51:50 2023 +0000
@@ -1,5 +1,5 @@
 <macros>
-    <token name="@TOOL_VERSION@">3.5.0</token>
+    <token name="@TOOL_VERSION@">3.5.0.1</token>
     <token name="@REQUIREMENT_VERSION@">0.3.5.0</token>
     <xml name="requirements">
         <requirements>