# HG changeset patch
# User petr-novak
# Date 1683724061 0
# Node ID 7ec262f92d8931abbea5dcd26f6bbf6cc966ccf8
# Parent  0ea5d893a057a6698c947bf9d92ccbf5d3fe0abf
planemo upload commit ba9c740b818bbd5b5a7a5e2afbea827f5bb91419

diff -r 0ea5d893a057 -r 7ec262f92d89 clean_dante_ltr.xml
--- a/clean_dante_ltr.xml	Wed Apr 26 06:01:25 2023 +0000
+++ b/clean_dante_ltr.xml	Wed May 10 13:07:41 2023 +0000
@@ -1,6 +1,6 @@
-<tool id="clean_dante_ltr" name="DANTE_LTR retrotransposons filtering" version="0.2.2.2" python_template_version="3.5">
+<tool id="clean_dante_ltr" name="DANTE_LTR retrotransposons filtering" version="0.2.2.4" python_template_version="3.5">
     <requirements>
-        <requirement type="package">dante_ltr=0.2.2.2</requirement>
+        <requirement type="package" version="0.2.2.4">dante_ltr</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         clean_ltr.R --gff3 '$dante_ltr' --reference_sequence '$reference' --output output --cpu \${GALAXY_SLOTS:-1}
diff -r 0ea5d893a057 -r 7ec262f92d89 dante_ltr_search.xml
--- a/dante_ltr_search.xml	Wed Apr 26 06:01:25 2023 +0000
+++ b/dante_ltr_search.xml	Wed May 10 13:07:41 2023 +0000
@@ -1,6 +1,6 @@
-<tool id="dante_ltr_search" name="DANTE_LTR retrotransposon identification" version="0.2.2.2" python_template_version="3.5">
+<tool id="dante_ltr_search" name="DANTE_LTR retrotransposon identification" version="0.2.2.4" python_template_version="3.5">
     <requirements>
-        <requirement type="package">dante_ltr=0.2.2.2</requirement>
+        <requirement type="package" version="0.2.2.4">dante_ltr</requirement>
      </requirements>
     <command detect_errors="exit_code"><![CDATA[
         echo \$PATH
diff -r 0ea5d893a057 -r 7ec262f92d89 dante_ltr_summary.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/dante_ltr_summary.xml	Wed May 10 13:07:41 2023 +0000
@@ -0,0 +1,18 @@
+<tool id="dante_ltr_summary" name="Summarize DANTE_LTR output" version="0.2.2.4" python_template_version="3.5">
+    <requirements>
+        <requirement type="package" version="0.2.2.4">dante_ltr</requirement>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+        dante_ltr_summary.R -g '$input1' -o output &&
+        mv output.pdf '$output1'
+    ]]></command>
+    <inputs>
+        <param type="data" name="input1" format="gff3" label="GFF3 output from DANTE_LTR" />
+    </inputs>
+    <outputs>
+        <data label="DANTE_LTR summmary from dataset $input1.hid" format="pdf" name="output1" />
+    </outputs>
+    <help><![CDATA[
+        This tool takes GFF3 output from DANTE_LTR and make graphical summary of the results.
+    ]]></help>
+</tool>