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comparison ChipSeqRatioDef.xml @ 22:58807b35777a draft

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planemo upload commit 20bdf879b52796d3fb251a20807191ff02084d3c-dirty
author petr-novak
date Wed, 02 Aug 2023 11:31:12 +0000
parents 5376e1c9adec
children 36c418bca8b2
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21:f4ed6a65a2ff 22:58807b35777a
1 <tool id="chip_seq_ratio_1" name="ChIP-Seq Mapper" version="0.1.1"> 1 <tool id="chip_seq_ratio_1" name="ChIP-Seq Mapper" version="0.1.1.3">
2 <stdio> 2 <stdio>
3 <exit_code range="1:" level="fatal" description="Error"/> 3 <exit_code range="1:" level="fatal" description="Error"/>
4 </stdio> 4 </stdio>
5 <description></description> 5 <description></description>
6 <requirements> 6 <requirements>
7 <requirement type="package">r-base64enc</requirement> 7 <requirement type="package">r-base64enc</requirement>
8 <requirement type="package">r-r2html</requirement> 8 <requirement type="package">r-r2html</requirement>
9 <requirement type="package">blast</requirement> 9 <requirement type="package">blast</requirement>
10 <!-- <requirement type="package">chip_seq_ration</requirement> --> 10 <!-- <requirement type="package">chip_seq_ration</requirement> -->
11 </requirements> 11 </requirements>
12 <command interpreter="python3"> 12 <required_files>
13 ChipSeqRatioAnalysis.py 13 <include type="literal" path="ChipSeqRatioAnalysis.py"/>
14 <include type="literal" path="ChipSeqRatioAnalysis.R"/>
15 </required_files>
16 <command>
17 python '$__tool_directory__'/ChipSeqRatioAnalysis.py
14 --ChipSeq=${ChipFile} 18 --ChipSeq=${ChipFile}
15 --InputSeq=${InputFile} 19 --InputSeq=${InputFile}
16 --Contigs=${ContigFile} 20 --Contigs=${ContigFile}
17 --output=${OutputFile} 21 --output=${OutputFile}
18 --html=${ReportFile} 22 --html=${ReportFile}