Mercurial > repos > petr-novak > re_utils

comparison ChipSeqRatioDef.xml @ 7:89c5ba120b21 draft

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author petr-novak
date Mon, 02 Dec 2019 08:41:43 -0500
parents f224513123a1
children c2c69c6090f0
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6:f224513123a1 7:89c5ba120b21
28 help="Contigs obtained from RepeatExplorer clustering pipeline in fasta file"/> 28 help="Contigs obtained from RepeatExplorer clustering pipeline in fasta file"/>
29 <param name="MaxCl" label="Number of clusters to be shown in graph" type="integer" value="200"/> 29 <param name="MaxCl" label="Number of clusters to be shown in graph" type="integer" value="200"/>
30 <param name="bitscore" label="Minimum bit score threshold" type="integer" value="50" help="All similarity hits with lower bit score will not be considered for ChIP/Input ratio calculation"/> 30 <param name="bitscore" label="Minimum bit score threshold" type="integer" value="50" help="All similarity hits with lower bit score will not be considered for ChIP/Input ratio calculation"/>
31 </inputs> 31 </inputs>
32 <outputs> 32 <outputs>
33 <data name="OutputFile" format="tabular"/> 33 <data name="OutputFile" format="tabular"
34 <data name="ReportFile" format="html"/> 34 label="csv table from ChIP-Seq-Mapper on datasets ${InputFile.hid} (Input) ${ChipFile.hid} (ChIP) and ${ContigFile.hid} (reference)"/>
35
36 <data name="ReportFile" format="html"
37 label="HTML report from ChIP-Seq-Mapper on datasets ${InputFile.hid} (Input) ${ChipFile.hid} (ChIP) and ${ContigFile.hid} (reference)"/>
35 </outputs> 38 </outputs>
36 39
37 <help> 40 <help>
38 **What it does** 41 **What it does**
39 42