Mercurial > repos > petr-novak > re_utils

comparison RM_custom_search.xml @ 9:c2c69c6090f0 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author petr-novak
date Fri, 31 Jan 2020 06:55:23 -0500
parents a4cd8608ef6b
children 16150c85fb3a
comparison
equal deleted inserted replaced
8:99569eccc583 9:c2c69c6090f0
8 <command interpreter="python3"> 8 <command interpreter="python3">
9 RM_custom_search.py -i $input_zip -d $RMdatabase -g $__root_dir__ -r $output_html 9 RM_custom_search.py -i $input_zip -d $RMdatabase -g $__root_dir__ -r $output_html
10 </command> 10 </command>
11 11
12 <inputs> 12 <inputs>
13 <param format="zip" type="data" name="input_zip" label="Input clustering data in as zip archive" help="zip archive obtained from previouse Graph-based sequence clustering"/> 13 <param format="zip" type="data" name="input_zip" label="RepeatExplorer output data archive" help="Zip archive obtained from previouse Graph-based sequence clustering"/>
14 <param name="RMdatabase" format="fasta" type="data" label="Library of repeats" help="Library of repeats as DNA sequences in fasta format. The recommended format for IDs in a custom library is : '>reapeatname#class/subclass'"/> 14 <param name="RMdatabase" format="fasta" type="data" label="Library of repeats" help="Library of repeats as DNA sequences in fasta format. The recommended format for IDs in a custom library is : '>reapeatname#class/subclass'"/>
15 </inputs> 15 </inputs>
16 16
17 <outputs> 17 <outputs>
18 <data format="html" name="output_html" label="HTML summary of custom database ${RMdatabase.hid} search on dataset ${input_zip.hid} " /> 18 <data format="html" name="output_html" label="HTML summary of custom database ${RMdatabase.hid} search on dataset ${input_zip.hid} " />