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comparison fasta_manual_input.xml @ 9:c2c69c6090f0 draft

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author petr-novak
date Fri, 31 Jan 2020 06:55:23 -0500
parents a4cd8608ef6b
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8:99569eccc583 9:c2c69c6090f0
5 sed -i 's/__gt__/>/g' ${fasta_file} && 5 sed -i 's/__gt__/>/g' ${fasta_file} &&
6 sed -i 's/__cn__/\n/g' ${fasta_file} 6 sed -i 's/__cn__/\n/g' ${fasta_file}
7 </command> 7 </command>
8 8
9 <inputs> 9 <inputs>
10 <param type="text" name="fasta_text" area="True" size="50x150" label="Paste sequences in fasta format" /> 10 <param type="text" name="fasta_text" area="True" size="50x150" label="Paste sequences in FASTA format" />
11 </inputs> 11 </inputs>
12 12
13 13
14 <outputs> 14 <outputs>
15 <data format="fasta" name="fasta_file" label="fasta sequence manually edited" /> 15 <data format="fasta" name="fasta_file" label="FASTA sequence manually edited" />
16 </outputs> 16 </outputs>
17 17
18 <help> 18 <help>
19 This is helper tool to enter fasta sequences manualy 19 This is helper tool to enter fasta sequences manualy
20 </help> 20 </help>