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comparison RM_custom_search.xml @ 13:f12eb3896842 draft

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Uploaded
author petr-novak
date Fri, 07 Feb 2020 02:25:47 -0500
parents 6b7d31026d1c
children 62fefa284036
comparison
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12:6b7d31026d1c 13:f12eb3896842
1 <tool id="RMsearch" name="RepeatMasker custom search" version="1.0.3"> 1 <tool id="RMsearch" name="RepeatMasker custom search" version="1.0.3">
2 2
3 <description>Scan clustering results using RepeatMasker against custom database of repeats</description> 3 <description>Scan clustering results using RepeatMasker against custom database of repeats</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="4.0.7" >repeatmasker</requirement> 5 <requirement type="package" version="4.0.7">repeatmasker</requirement>
6 <requirement type="package">r-r2html</requirement> 6 <requirement type="package">r-r2html</requirement>
7 <requirement type="package">r-getopt</requirement> 7 <requirement type="package">r-getopt</requirement>
8 <requirement type="package">bioconductor-biostrings</requirement>
8 </requirements> 9 </requirements>
9 10
10 <command interpreter="python3"> 11 <command interpreter="python3">
11 RM_custom_search.py -i $input_zip -d $RMdatabase -g $__root_dir__ -r $output_html 12 RM_custom_search.py -i $input_zip -d $RMdatabase -g $__root_dir__ -r $output_html
12 </command> 13 </command>