Mercurial > repos > petr-novak > re_utils

comparison pairScan.xml @ 21:f4ed6a65a2ff draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author petr-novak
date Thu, 27 Jul 2023 09:46:13 +0000
parents c2c69c6090f0
children 58807b35777a
comparison
equal deleted inserted replaced
20:5a05925340b0 21:f4ed6a65a2ff
1 1
2 <tool id="pairScan" name="Scan paired-end reads for overlap" version="1.0.0"> 2 <tool id="pairScan" name="Scan paired-end reads for overlap" version="1.0.0.1">
3 <description> Scan paired-end reads for overlap </description> 3 <description> Scan paired-end reads for overlap </description>
4 <requirements> 4 <requirements>
5 <requirement type="package">python-levenshtein</requirement> 5 <requirement type="package">python-levenshtein</requirement>
6 </requirements> 6 </requirements>
7 <required_files>
8 <include type="literal" path="pairScan.py"/>
9 </required_files>
10
7 <command interpreter="python"> 11 <command interpreter="python">
8 pairScan.py -f $fasta_input -o $min_overlap -m $max_mismatch -p $pass -b $bad -s $offset 12 pairScan.py -f $fasta_input -o $min_overlap -m $max_mismatch -p $pass -b $bad -s $offset
9 </command> 13 </command>
10 14
11 <inputs> 15 <inputs>