Mercurial > repos > petr-novak > re_utils

diff single_fastq_filtering.xml @ 33:f1738f8649b0 draft

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planemo upload commit 39094a128ea3dd2c39f4997c6de739c33c07e5f3-dirty
author petr-novak
date Fri, 04 Aug 2023 08:09:40 +0000
parents 58807b35777a
children
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line diff
--- a/single_fastq_filtering.xml	Fri Aug 04 07:37:49 2023 +0000
+++ b/single_fastq_filtering.xml	Fri Aug 04 08:09:40 2023 +0000
@@ -8,7 +8,7 @@
     </description>
     <requirements>
         <requirement type="package">blast</requirement>
-        <requirement type="package">cutadapt</requirement>
+        <requirement type="package" version="4.4">cutadapt</requirement>
         <requirement type="package">bioconductor-shortread</requirement>
         <requirement type="package">r-optparse</requirement>
     </requirements>
@@ -16,7 +16,7 @@
         <include type="literal" path="single_fastq_filtering_wrapper.sh"/>
         <include type="literal" path="single_fastq_filtering.R"/>
     </required_files>
-    <command interpreter="bash">
+    <command>
         bash '$__tool_directory__'/single_fastq_filtering_wrapper.sh -a ${A} -o ${output}
         -c ${cut_off} -p ${percent_above} -N ${max_n} -G ${png_output}