Mercurial > repos > petr-novak > repeat_annotation_pipeline2

diff repeat_annotate_custom.xml @ 3:e955b40ad3a4 draft default tip

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author petr-novak
date Tue, 12 Oct 2021 07:43:54 +0000
parents 3f8ae272f4f3
children
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--- a/repeat_annotate_custom.xml	Thu Oct 07 07:29:59 2021 +0000
+++ b/repeat_annotate_custom.xml	Tue Oct 12 07:43:54 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="repeat_annotate" name="RepeatExplorer Based Assembly Annotation" version="0.1.0" python_template_version="3.5">
+<tool id="repeat_annotate" name="RepeatExplorer Based Assembly Annotation" version="0.1.1" python_template_version="3.5">
     <requirements>
         <requirement type="package">repeatmasker</requirement>
         <requirement type="package">bioconductor-rtracklayer</requirement>
@@ -20,13 +20,13 @@
     </inputs>
     <outputs>
         <data name="output1" format="gff3"  label="Repeat Annotation on ${on_string}, cleaned gff"/>
-        <data name="output2" format="tabular" label="RepeatMasker on ${on_string}, original output" />
+        <data name="output2" format="tabular" label="Raw output from RepeatMasker on ${on_string}" />
     </outputs>
     <help><![CDATA[
         This tools uses RepeatMasker to annotate repetitive sequences in the genome assemblie using custom library of repeats created from RepeatExplorer output.
-        Library of repeats created from RepeatExplorer ouput are contigs and TAREAN consensus sequences in fasta format where sequence header containg information about classification of repeats as **>sequence_id#classification_level1/classification_level2/...**
+        Library of repeats can be created from RepeatExplorer ouputt from contigs and TAREAN consensus sequences. Fasta formated library of repeats must contain header containg information about classification of repeats as **>sequence_id#classification_level1/classification_level2/...**
 
-        Classification in RepeatExplorer based library follows predetermined classification levels. User can however specify additional classification levels or ciompletelly custom classifications. Conflicts in annotations are resolved based on classification hierarchy.
+        Classification in RepeatExplorer based library follows predetermined classification levels. User can however specify additional classification levels or completelly custom classifications. Conflicts in annotations are resolved based on classification hierarchy.
     ]]></help>
 </tool>