Mercurial > repos > petr-novak > repeat_annotation_pipeline3
annotate summarize_gff_by_attribute.xml @ 9:4a068d23fda6 draft
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| author | petr-novak |
|---|---|
| date | Wed, 03 May 2023 11:19:06 +0000 |
| parents | b53f5a456d01 |
| children | 5366d5ea04bc |
| rev | line source |
|---|---|
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b53f5a456d01
"planemo upload commit 3aefb0555456837d10fe69e4ad25de08d5972cb2"
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1 <tool id="summarize_gff_by_attribute" name="Create summary on GFF3 attribute" version="0.1.0" python_template_version="3.5"> |
| 0 | 2 <requirements> |
| 3 <requirement type="package">bioconductor-rtracklayer</requirement> | |
| 4 </requirements> | |
| 5 <command detect_errors="exit_code"><![CDATA[ | |
| 6 $__tool_directory__/summarize_gff_by_attribute.R '$input_gff' $attribute_name '$output_table' | |
| 7 ]]></command> | |
| 8 <inputs> | |
| 9 <param type="data" name="input_gff" format="gff" label="Input GFF"> | |
| 10 <sanitizer invalid_char=""> | |
| 11 <valid initial="string.ascii_letters,string.digits"> | |
| 12 <add value="_" /> | |
| 13 </valid> | |
| 14 </sanitizer> | |
| 15 </param> | |
| 16 <param type="text" name="attribute_name" label="Name of attribute to summarize"/> | |
| 17 </inputs> | |
| 18 <outputs> | |
| 19 <data name="output_table" format="tsv" /> | |
| 20 </outputs> | |
| 21 <help><![CDATA[ | |
| 22 TODO: Fill in help. | |
| 23 ]]></help> | |
| 24 </tool> |