Mercurial > repos > petr-novak > repeat_annotation_pipeline3

comparison repeat_annotate_custom.xml @ 12:755a4d643184 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit a61591d548f42ff417781e7fe7418dc2901ccc23
author petr-novak
date Tue, 26 Sep 2023 07:28:04 +0000
parents 5366d5ea04bc
children
comparison
equal deleted inserted replaced
11:5366d5ea04bc 12:755a4d643184
1 <tool id="repeat_annotate" name="Library Based Assembly Annotation" version="0.1.6" python_template_version="3.5"> 1 <tool id="repeat_annotate" name="Library Based Assembly Annotation" version="0.1.7" python_template_version="3.5">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="4.1.2.p1">repeatmasker</requirement> 3 <requirement type="package" version="4.1.2.p1">repeatmasker</requirement>
4 <requirement type="package">bioconductor-rtracklayer</requirement> 4 <requirement type="package">bioconductor-rtracklayer</requirement>
5 </requirements> 5 </requirements>
6 <required_files> 6 <required_files>
28 <param type="select" label="sensitivity" name="sensitivity" > 28 <param type="select" label="sensitivity" name="sensitivity" >
29 <option value="default" selected="true" >Default sensitivity </option> 29 <option value="default" selected="true" >Default sensitivity </option>
30 <option value="-s">Slow search, more sensitive </option> 30 <option value="-s">Slow search, more sensitive </option>
31 <option value="-q">Quick search, less sensitive </option> 31 <option value="-q">Quick search, less sensitive </option>
32 </param> 32 </param>
33 <param argument="-nolow" type="boolean" truevalue="" falsevalue="-nolow" checked="false" label="Perform masking of low complexity and simple repeats" /> 33 <param argument="-nolow" type="boolean" truevalue="" falsevalue="-nolow" checked="true" label="Perform masking of low complexity and simple repeats" />
34 </inputs> 34 </inputs>
35 <outputs> 35 <outputs>
36 <data name="output1" format="gff3" label="Repeat Annotation (GFF3) on ${on_string}"/> 36 <data name="output1" format="gff3" label="Repeat Annotation (GFF3) on ${on_string}"/>
37 <data name="output2" format="tabular" label="Raw output from RepeatMasker on ${on_string}" /> 37 <data name="output2" format="tabular" label="Raw output from RepeatMasker on ${on_string}" />
38 </outputs> 38 </outputs>