Mercurial > repos > petr-novak > repeat_annotation_pipeline3
comparison summarize_gff_by_attribute.xml @ 0:ea6a3059a6af draft
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| author | petr-novak |
|---|---|
| date | Mon, 18 Oct 2021 11:01:20 +0000 |
| parents | |
| children | b53f5a456d01 |
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| -1:000000000000 | 0:ea6a3059a6af |
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| 1 <tool id="summarize_gff_by_attribute" name="Create summary of gff attribute" version="0.1.0" python_template_version="3.5"> | |
| 2 <requirements> | |
| 3 <requirement type="package">bioconductor-rtracklayer</requirement> | |
| 4 </requirements> | |
| 5 <command detect_errors="exit_code"><![CDATA[ | |
| 6 $__tool_directory__/summarize_gff_by_attribute.R '$input_gff' $attribute_name '$output_table' | |
| 7 ]]></command> | |
| 8 <inputs> | |
| 9 <param type="data" name="input_gff" format="gff" label="Input GFF"> | |
| 10 <sanitizer invalid_char=""> | |
| 11 <valid initial="string.ascii_letters,string.digits"> | |
| 12 <add value="_" /> | |
| 13 </valid> | |
| 14 </sanitizer> | |
| 15 </param> | |
| 16 <param type="text" name="attribute_name" label="Name of attribute to summarize"/> | |
| 17 </inputs> | |
| 18 <outputs> | |
| 19 <data name="output_table" format="tsv" /> | |
| 20 </outputs> | |
| 21 <help><![CDATA[ | |
| 22 TODO: Fill in help. | |
| 23 ]]></help> | |
| 24 </tool> |