Mercurial > repos > petr-novak > repeat_annotation_pipeline3

diff extract_re_contigs.xml @ 11:5366d5ea04bc draft

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planemo upload commit 9d1b19f98d8b7f0a0d1baf2da63a373d155626f8-dirty
author petr-novak
date Fri, 04 Aug 2023 12:35:32 +0000
parents eca9213923b1
children
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--- a/extract_re_contigs.xml	Thu May 04 09:27:43 2023 +0000
+++ b/extract_re_contigs.xml	Fri Aug 04 12:35:32 2023 +0000
@@ -2,8 +2,11 @@
     <requirements>
         <requirement type="package" version="3">python</requirement>
     </requirements>
+    <required_files>
+        <include type="literal" path="get_contigs_from_re_archive.py"/>
+    </required_files>
     <command detect_errors="exit_code"><![CDATA[
-        $__tool_directory__/get_contigs_from_re_archive.py -re '$re_archive' -m '$min_coverage' -L '$min_length' -f '$contigs'
+        python $__tool_directory__/get_contigs_from_re_archive.py -re '$re_archive' -m '$min_coverage' -L '$min_length' -f '$contigs'
     ]]></command>
     <inputs>
         <param type="data" name="re_archive" format="zip" label="RepeatExplorer archive"/>