Mercurial > repos > petr-novak > repeat_annotation_pipeline3
diff format_repeat_library.xml @ 11:5366d5ea04bc draft
planemo upload commit 9d1b19f98d8b7f0a0d1baf2da63a373d155626f8-dirty
author | petr-novak |
---|---|
date | Fri, 04 Aug 2023 12:35:32 +0000 |
parents | ea6a3059a6af |
children |
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--- a/format_repeat_library.xml Thu May 04 09:27:43 2023 +0000 +++ b/format_repeat_library.xml Fri Aug 04 12:35:32 2023 +0000 @@ -2,8 +2,11 @@ <requirements> <requirement type="package" version="2.60.0">bioconductor-biostrings</requirement> </requirements> + <required_files> + <include type="literal" path="annotate_contigs.R"/> + </required_files> <command detect_errors="exit_code"><![CDATA[ - $__tool_directory__/annotate_contigs.R '$contigs' '$cluster_table' '$annotated_contigs' + Rscript $__tool_directory__/annotate_contigs.R '$contigs' '$cluster_table' '$annotated_contigs' ]]></command> <inputs> <param type="data" name="contigs" format="fasta" label="Contigs - Library of Repeats from TAREAN/RepeatExplorer pipeline" /> @@ -60,7 +63,7 @@ Clusters with higher number than those in CLUSTER_TABLE are removed from Repeat library -Contigs are provided in followinf format:: +Contigs are provided in following format:: >CL25Contig1