Mercurial > repos > petr-novak > repeat_annotation_pipeline3
diff repeat_annotate_custom.xml @ 6:b53f5a456d01 draft
"planemo upload commit 3aefb0555456837d10fe69e4ad25de08d5972cb2"
author | petr-novak |
---|---|
date | Thu, 19 May 2022 08:23:55 +0000 |
parents | d7bb42f254a2 |
children | acf12f2e8355 |
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--- a/repeat_annotate_custom.xml Fri Apr 22 10:26:11 2022 +0000 +++ b/repeat_annotate_custom.xml Thu May 19 08:23:55 2022 +0000 @@ -18,18 +18,18 @@ ]]></command> <inputs> - <param type="data" name="input" format="fasta" label="Genome/ Assembly to annotate" /> + <param type="data" name="input" format="fasta" label="Genome Assembly to annotate" /> <param type="data" name="repeat_library" format="fasta" label="RepeatExplorer based Library of Repetitive Sequences" help="custom database of repetitive sequences should be provided in fasta format. Sequence header should specify repeat class: >sequence_id#classification_level1/classification_level2/..." /> <param type="select" label="sensitivity" name="sensitivity" > <option value="default" selected="true" >Default sensitivity </option> <option value="-s">Slow search, more sensitive </option> - <option value="-q">Quick search, more sensitive </option> + <option value="-q">Quick search, less sensitive </option> </param> </inputs> <outputs> - <data name="output1" format="gff3" label="Repeat Annotation on ${on_string}, cleaned gff"/> + <data name="output1" format="gff3" label="Repeat Annotation (GFF3) on ${on_string}"/> <data name="output2" format="tabular" label="Raw output from RepeatMasker on ${on_string}" /> </outputs> <help><![CDATA[