Mercurial > repos > petr-novak > repeat_annotation_pipeline3
diff summarize_gff_by_attribute.xml @ 0:ea6a3059a6af draft
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author | petr-novak |
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date | Mon, 18 Oct 2021 11:01:20 +0000 |
parents | |
children | b53f5a456d01 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/summarize_gff_by_attribute.xml Mon Oct 18 11:01:20 2021 +0000 @@ -0,0 +1,24 @@ +<tool id="summarize_gff_by_attribute" name="Create summary of gff attribute" version="0.1.0" python_template_version="3.5"> + <requirements> + <requirement type="package">bioconductor-rtracklayer</requirement> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + $__tool_directory__/summarize_gff_by_attribute.R '$input_gff' $attribute_name '$output_table' + ]]></command> + <inputs> + <param type="data" name="input_gff" format="gff" label="Input GFF"> + <sanitizer invalid_char=""> + <valid initial="string.ascii_letters,string.digits"> + <add value="_" /> + </valid> + </sanitizer> + </param> + <param type="text" name="attribute_name" label="Name of attribute to summarize"/> + </inputs> + <outputs> + <data name="output_table" format="tsv" /> + </outputs> + <help><![CDATA[ + TODO: Fill in help. + ]]></help> +</tool>